RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 RPGRQ92834 1020 aaKnown RBP9.26□□□□□ -0.93
NEK3-207ENST00000617054 PDGFDQ9GZP0 370 aaPredicted RBP9.26□□□□□ -0.93
NEK3-207ENST00000617054 CASZ1Q86V15 1759 aa9.26□□□□□ -0.93
NEK3-207ENST00000617054 POLRMTO00411 1230 aaKnown RBP9.26□□□□□ -0.93
NEK3-207ENST00000617054 FOSBP53539 338 aa9.26□□□□□ -0.93
NEK3-207ENST00000617054 EZH2Q15910 746 aaKnown RBP9.26□□□□□ -0.93
NEK3-207ENST00000617054 SDR42E1Q8WUS8 393 aa9.26□□□□□ -0.93
NEK3-207ENST00000617054 SMC3Q9UQE7 1217 aa9.26□□□□□ -0.93
NEK3-207ENST00000617054 TNRC6CQ9HCJ0 1690 aaKnown RBP9.26□□□□□ -0.93
NEK3-207ENST00000617054 ZNF804BA4D1E1 1349 aa9.26□□□□□ -0.93
NEK3-207ENST00000617054 LAMB2P55268 1798 aa9.26□□□□□ -0.93
NEK3-207ENST00000617054 RFX7Q2KHR2 1363 aa9.26□□□□□ -0.93
NEK3-207ENST00000617054 COL1A1P02452 1464 aaPredicted RBP9.25□□□□□ -0.93
NEK3-207ENST00000617054 CYP7A1P22680 504 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 NUCB2P80303 420 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 CTDSPL2Q05D32 466 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 UBE4AQ14139 1066 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 GSE1Q14687 1217 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 TSGA10IPQ3SY00 556 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 ZNF384Q8TF68 577 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 STRBPQ96SI9 672 aaKnown RBP9.25□□□□□ -0.93
NEK3-207ENST00000617054 NBPF3Q9H094 633 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 NCOA5Q9HCD5 579 aaKnown RBP9.25□□□□□ -0.93
NEK3-207ENST00000617054 LRP5O75197 1615 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 ZNF213O14771 459 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 JAK2O60674 1132 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 PRDX5P30044 214 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 DYNLL1P63167 89 aaKnown RBP9.25□□□□□ -0.93
NEK3-207ENST00000617054 LRRFIP1Q32MZ4 808 aaKnown RBP9.25□□□□□ -0.93
NEK3-207ENST00000617054 DDX11Q96FC9 970 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 INTS4Q96HW7 963 aaKnown RBP9.25□□□□□ -0.93
NEK3-207ENST00000617054 GBP4Q96PP9 640 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 UBR3Q6ZT12 1888 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 KDM4AO75164 1064 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 PRPF40AO75400 957 aaKnown RBP9.25□□□□□ -0.93
NEK3-207ENST00000617054 NCLP19338 710 aaKnown RBP9.25□□□□□ -0.93
NEK3-207ENST00000617054 SYT1P21579 422 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 HIBADHP31937 336 aaKnown RBP9.25□□□□□ -0.93
NEK3-207ENST00000617054 EVX2Q03828 476 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 UBE3CQ15386 1083 aa9.25□□□□□ -0.93
NEK3-207ENST00000617054 IMMTQ16891 758 aaKnown RBP9.25□□□□□ -0.93
NEK3-207ENST00000617054 EPB41L4AQ9HCS5 686 aaPredicted RBP9.25□□□□□ -0.93
NEK3-207ENST00000617054 ST5P78524 1137 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 GPSM2P81274 684 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 GRAPQ13588 217 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 ZSCAN25Q6NSZ9 544 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 DHX32Q7L7V1 743 aaKnown RBP9.24□□□□□ -0.93
NEK3-207ENST00000617054 TBC1D10CQ8IV04 446 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 GRAPLQ8TC17 118 aaPredicted RBP9.24□□□□□ -0.93
NEK3-207ENST00000617054 PLSCR1O15162 318 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 MMP10P09238 476 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 KRT32Q14532 448 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 GRIK5Q16478 980 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 FAM173BQ6P4H8 233 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 FERMT3Q86UX7 667 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 AKT1S1Q96B36 256 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 ANO8Q9HCE9 1232 aaPredicted RBP9.24□□□□□ -0.93
NEK3-207ENST00000617054 TACC3Q9Y6A5 838 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 SLC4A4Q9Y6R1 1079 aa9.24□□□□□ -0.93
NEK3-207ENST00000617054 CYP2D7A0A087X1C5 515 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 VPS37CA5D8V6 355 aaPredicted RBP9.23□□□□□ -0.93
NEK3-207ENST00000617054 IGSF3O75054 1194 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 BRD1O95696 1058 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 RXRAP19793 462 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 FBXO33Q7Z6M2 555 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 GNL3LQ9NVN8 582 aaKnown RBP9.23□□□□□ -0.93
NEK3-207ENST00000617054 RIMBP2O15034 1052 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 EXOSC10Q01780 885 aaKnown RBP9.23□□□□□ -0.93
NEK3-207ENST00000617054 SCRN1Q12765 414 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 RRP12Q5JTH9 1297 aaKnown RBP9.23□□□□□ -0.93
NEK3-207ENST00000617054 DEFB132Q7Z7B7 95 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 IFNL3Q8IZI9 196 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 SENP2Q9HC62 589 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 TOMM22Q9NS69 142 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.23□□□□□ -0.93
NEK3-207ENST00000617054 GSG1L2A8MUP6 293 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 B4E1Z4 1266 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 MKRN3Q13064 507 aaKnown RBP9.23□□□□□ -0.93
NEK3-207ENST00000617054 ZKSCAN3Q9BRR0 538 aa9.23□□□□□ -0.93
NEK3-207ENST00000617054 MINDY4BA8MYZ0 360 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 STX6O43752 255 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 UFL1O94874 794 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 CYB5R4Q7L1T6 521 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 ANKRD2Q9GZV1 360 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 AATFQ9NY61 560 aaKnown RBP eCLIP9.22□□□□□ -0.93
NEK3-207ENST00000617054 MYH7P12883 1935 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 PNPLA7Q6ZV29 1317 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 PATL2C9JE40 543 aaKnown RBP9.22□□□□□ -0.93
NEK3-207ENST00000617054 ANTXR2P58335 489 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 MECOMQ03112 1051 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 LARP1BQ659C4 914 aaKnown RBP9.22□□□□□ -0.93
NEK3-207ENST00000617054 CCDC144CPQ8IYA2 1237 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 ZSCAN31Q96LW9 406 aaPredicted RBP9.22□□□□□ -0.93
NEK3-207ENST00000617054 NAPBQ9H115 298 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 POLLQ9UGP5 575 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 CTNNA3Q9UI47 895 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 NEDD4P46934 1319 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 DDX11L8A8MPP1 907 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 C6orf229H3BNL8 230 aa9.22□□□□□ -0.93
NEK3-207ENST00000617054 PRC1O43663 620 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms