RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 METTL24Q5JXM2 366 aa23.79■■□□□ 1.4
CDX1-202ENST00000616154 IFNL1Q8IU54 200 aa23.79■■□□□ 1.4
CDX1-202ENST00000616154 PDE8BO95263 885 aa23.78■■□□□ 1.4
CDX1-202ENST00000616154 VPS37DQ86XT2 251 aa23.78■■□□□ 1.4
CDX1-202ENST00000616154 DZIP1LQ8IYY4 767 aaKnown RBP23.78■■□□□ 1.4
CDX1-202ENST00000616154 USP44Q9H0E7 712 aa23.78■■□□□ 1.4
CDX1-202ENST00000616154 TDRD3Q9H7E2 651 aaKnown RBP23.78■■□□□ 1.4
CDX1-202ENST00000616154 CRKP46108 304 aa23.77■■□□□ 1.4
CDX1-202ENST00000616154 ANKRD13AQ8IZ07 590 aa23.77■■□□□ 1.4
CDX1-202ENST00000616154 TBC1D22AQ8WUA7 517 aa23.77■■□□□ 1.4
CDX1-202ENST00000616154 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.77■■□□□ 1.4
CDX1-202ENST00000616154 MYH13Q9UKX3 1938 aa23.77■■□□□ 1.4
CDX1-202ENST00000616154 CAVIN4Q5BKX8 364 aa23.76■■□□□ 1.39
CDX1-202ENST00000616154 FBXO46Q6PJ61 603 aaPredicted RBP23.76■■□□□ 1.39
CDX1-202ENST00000616154 TEPSINQ96N21 525 aa23.76■■□□□ 1.39
CDX1-202ENST00000616154 IQSEC3Q9UPP2 1182 aaPredicted RBP23.76■■□□□ 1.39
CDX1-202ENST00000616154 KIF16BQ96L93 1317 aa23.75■■□□□ 1.39
CDX1-202ENST00000616154 IGF2BP3O00425 579 aaKnown RBP eCLIP23.75■■□□□ 1.39
CDX1-202ENST00000616154 HDLBPQ00341 1268 aaKnown RBP23.75■■□□□ 1.39
CDX1-202ENST00000616154 GRIK5Q16478 980 aa23.75■■□□□ 1.39
CDX1-202ENST00000616154 KLHDC4Q8TBB5 520 aa23.75■■□□□ 1.39
CDX1-202ENST00000616154 GJA5P36382 358 aa23.74■■□□□ 1.39
CDX1-202ENST00000616154 CHAF1AQ13111 956 aaPredicted RBP23.74■■□□□ 1.39
CDX1-202ENST00000616154 TNNI2P48788 182 aa23.73■■□□□ 1.39
CDX1-202ENST00000616154 SMC4Q9NTJ3 1288 aa23.73■■□□□ 1.39
CDX1-202ENST00000616154 TCP10L2B9ZVM9 353 aa23.72■■□□□ 1.39
CDX1-202ENST00000616154 FRAT2O75474 233 aaPredicted RBP23.72■■□□□ 1.39
CDX1-202ENST00000616154 PUM3Q15397 648 aaKnown RBP23.72■■□□□ 1.39
CDX1-202ENST00000616154 CDAN1Q8IWY9 1227 aa23.72■■□□□ 1.39
CDX1-202ENST00000616154 TMEM39BQ9GZU3 492 aa23.72■■□□□ 1.39
CDX1-202ENST00000616154 TESPA1A2RU30 521 aaPredicted RBP23.71■■□□□ 1.39
CDX1-202ENST00000616154 FGFR2P21802 821 aa23.71■■□□□ 1.39
CDX1-202ENST00000616154 RFX5P48382 616 aaPredicted RBP23.71■■□□□ 1.39
CDX1-202ENST00000616154 BCAMP50895 628 aa23.71■■□□□ 1.39
CDX1-202ENST00000616154 OTUD7BQ6GQQ9 843 aa23.71■■□□□ 1.39
CDX1-202ENST00000616154 TEKT1Q969V4 418 aa23.71■■□□□ 1.39
CDX1-202ENST00000616154 MRIQ9BWK5 157 aa23.71■■□□□ 1.39
CDX1-202ENST00000616154 ELP3Q9H9T3 547 aa23.71■■□□□ 1.39
CDX1-202ENST00000616154 IFIT1P09914 478 aaKnown RBP23.7■■□□□ 1.38
CDX1-202ENST00000616154 OPTNQ96CV9 577 aa23.7■■□□□ 1.38
CDX1-202ENST00000616154 SUGT1Q9Y2Z0 365 aa23.7■■□□□ 1.38
CDX1-202ENST00000616154 EYA2O00167 538 aa23.69■■□□□ 1.38
CDX1-202ENST00000616154 RARSP54136 660 aaKnown RBP23.69■■□□□ 1.38
CDX1-202ENST00000616154 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.69■■□□□ 1.38
CDX1-202ENST00000616154 ZDHHC15Q96MV8 337 aa23.69■■□□□ 1.38
CDX1-202ENST00000616154 PTPN18Q99952 460 aa23.69■■□□□ 1.38
CDX1-202ENST00000616154 MAST3O60307 1309 aa23.69■■□□□ 1.38
CDX1-202ENST00000616154 SLC34A2O95436 690 aa23.68■■□□□ 1.38
CDX1-202ENST00000616154 CRHR2Q13324 411 aa23.68■■□□□ 1.38
CDX1-202ENST00000616154 MAP3K9P80192 1104 aa23.67■■□□□ 1.38
CDX1-202ENST00000616154 VGLL4Q14135 290 aa23.67■■□□□ 1.38
CDX1-202ENST00000616154 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.67■■□□□ 1.38
CDX1-202ENST00000616154 HTTP42858 3142 aa23.67■■□□□ 1.38
CDX1-202ENST00000616154 SLC5A1P13866 664 aa23.66■■□□□ 1.38
CDX1-202ENST00000616154 CACNB3P54284 484 aa23.66■■□□□ 1.38
CDX1-202ENST00000616154 FKBP1CQ5VVH2 108 aa23.66■■□□□ 1.38
CDX1-202ENST00000616154 OTOP1Q7RTM1 612 aa23.66■■□□□ 1.38
CDX1-202ENST00000616154 FAM83AQ86UY5 434 aa23.66■■□□□ 1.38
CDX1-202ENST00000616154 LPIN2Q92539 896 aa23.66■■□□□ 1.38
CDX1-202ENST00000616154 ERO1AQ96HE7 468 aa23.66■■□□□ 1.38
CDX1-202ENST00000616154 MS4A4AQ96JQ5 239 aa23.66■■□□□ 1.38
CDX1-202ENST00000616154 TMOD2Q9NZR1 351 aa23.66■■□□□ 1.38
CDX1-202ENST00000616154 TRIM17Q9Y577 477 aa23.66■■□□□ 1.38
CDX1-202ENST00000616154 APOBEC3HQ6NTF7 200 aaKnown RBP23.65■■□□□ 1.38
CDX1-202ENST00000616154 ATG9AQ7Z3C6 839 aa23.65■■□□□ 1.38
CDX1-202ENST00000616154 ARHGAP45Q92619 1136 aa23.65■■□□□ 1.38
CDX1-202ENST00000616154 FBXO3Q9UK99 471 aa23.65■■□□□ 1.38
CDX1-202ENST00000616154 CSADQ9Y600 493 aa23.65■■□□□ 1.38
CDX1-202ENST00000616154 HHIPL2Q6UWX4 724 aa23.64■■□□□ 1.38
CDX1-202ENST00000616154 WDR66Q8TBY9 1149 aa23.64■■□□□ 1.38
CDX1-202ENST00000616154 CNKSR2Q8WXI2 1034 aa23.64■■□□□ 1.38
CDX1-202ENST00000616154 API5Q9BZZ5 524 aaKnown RBP23.64■■□□□ 1.38
CDX1-202ENST00000616154 NOB1Q9ULX3 412 aaKnown RBP23.64■■□□□ 1.38
CDX1-202ENST00000616154 RPAP1Q9BWH6 1393 aaPredicted RBP23.64■■□□□ 1.37
CDX1-202ENST00000616154 UBTFL1P0CB47 393 aaPredicted RBP23.63■■□□□ 1.37
CDX1-202ENST00000616154 BRI3BPQ8WY22 251 aa23.63■■□□□ 1.37
CDX1-202ENST00000616154 RBBP6Q7Z6E9 1792 aaKnown RBP23.63■■□□□ 1.37
CDX1-202ENST00000616154 CIAO1O76071 339 aa23.62■■□□□ 1.37
CDX1-202ENST00000616154 GTF2A2P52657 109 aa23.62■■□□□ 1.37
CDX1-202ENST00000616154 HNRNPUQ00839 825 aaKnown RBP eCLIP23.62■■□□□ 1.37
CDX1-202ENST00000616154 CD99L2Q8TCZ2 262 aa23.62■■□□□ 1.37
CDX1-202ENST00000616154 HOOK2Q96ED9 719 aa23.62■■□□□ 1.37
CDX1-202ENST00000616154 CCL15-CCL14A0A0B4J2E2 113 aa23.61■■□□□ 1.37
CDX1-202ENST00000616154 SPDYE5A6NIY4 337 aa23.61■■□□□ 1.37
CDX1-202ENST00000616154 SP3Q02447 781 aa23.61■■□□□ 1.37
CDX1-202ENST00000616154 CCL15Q16663 113 aa23.61■■□□□ 1.37
CDX1-202ENST00000616154 OTUD5Q96G74 571 aa23.61■■□□□ 1.37
CDX1-202ENST00000616154 ATP2B3Q16720 1220 aa23.6■■□□□ 1.37
CDX1-202ENST00000616154 PTPN22Q9Y2R2 807 aa23.6■■□□□ 1.37
CDX1-202ENST00000616154 SNCAIPQ9Y6H5 919 aa23.6■■□□□ 1.37
CDX1-202ENST00000616154 WRNIP1Q96S55 665 aa23.59■■□□□ 1.37
CDX1-202ENST00000616154 SIL1Q9H173 461 aa23.59■■□□□ 1.37
CDX1-202ENST00000616154 EFCC1Q9HA90 598 aa23.59■■□□□ 1.37
CDX1-202ENST00000616154 HDAC5Q9UQL6 1122 aa23.59■■□□□ 1.37
CDX1-202ENST00000616154 ZBED9Q6R2W3 1325 aa23.59■■□□□ 1.37
CDX1-202ENST00000616154 AK9Q5TCS8 1911 aa23.59■■□□□ 1.37
CDX1-202ENST00000616154 TAF1CQ15572 869 aaPredicted RBP23.59■■□□□ 1.37
CDX1-202ENST00000616154 PRPF38BQ5VTL8 546 aaKnown RBP23.59■■□□□ 1.37
CDX1-202ENST00000616154 DCAF15Q66K64 600 aa23.59■■□□□ 1.37
CDX1-202ENST00000616154 INTS3Q68E01 1043 aaKnown RBP23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms