RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 FKBP4Q02790 459 aaKnown RBP eCLIP21.22■□□□□ 0.99
UPF1-210ENST00000600689 LINC00301Q8NCQ3 95 aa21.22■□□□□ 0.99
UPF1-210ENST00000600689 L2HGDHQ9H9P8 463 aa21.22■□□□□ 0.99
UPF1-210ENST00000600689 CARMIL3Q8ND23 1372 aa21.22■□□□□ 0.99
UPF1-210ENST00000600689 CPLX1O14810 134 aa21.22■□□□□ 0.99
UPF1-210ENST00000600689 SPECC1Q5M775 1068 aa21.22■□□□□ 0.99
UPF1-210ENST00000600689 ADALQ6DHV7 355 aa21.22■□□□□ 0.99
UPF1-210ENST00000600689 CCDC85AQ96PX6 553 aaPredicted RBP21.22■□□□□ 0.99
UPF1-210ENST00000600689 TRIM34Q9BYJ4 488 aa21.22■□□□□ 0.99
UPF1-210ENST00000600689 ARGLU1Q9NWB6 273 aaPredicted RBP21.22■□□□□ 0.99
UPF1-210ENST00000600689 ORC3Q9UBD5 711 aaPredicted RBP21.22■□□□□ 0.99
UPF1-210ENST00000600689 CPDO75976 1380 aa21.21■□□□□ 0.99
UPF1-210ENST00000600689 A0A087WZG4 1122 aa21.21■□□□□ 0.99
UPF1-210ENST00000600689 GNG11P61952 73 aa21.21■□□□□ 0.99
UPF1-210ENST00000600689 PNOCQ13519 176 aa21.21■□□□□ 0.99
UPF1-210ENST00000600689 WASHC4Q2M389 1173 aa21.21■□□□□ 0.99
UPF1-210ENST00000600689 PFKFB1P16118 471 aa21.2■□□□□ 0.99
UPF1-210ENST00000600689 KARSQ15046 597 aaKnown RBP21.2■□□□□ 0.99
UPF1-210ENST00000600689 LMBR1LQ6UX01 489 aa21.2■□□□□ 0.99
UPF1-210ENST00000600689 LLPHQ9BRT6 129 aaKnown RBP21.2■□□□□ 0.99
UPF1-210ENST00000600689 STRN4Q9NRL3 753 aa21.2■□□□□ 0.99
UPF1-210ENST00000600689 GOLGA8BA8MQT2 603 aa21.2■□□□□ 0.98
UPF1-210ENST00000600689 KIF28PB7ZC32 967 aa21.2■□□□□ 0.98
UPF1-210ENST00000600689 CYP2C19P33261 490 aa21.2■□□□□ 0.98
UPF1-210ENST00000600689 SLAIN2Q9P270 581 aa21.2■□□□□ 0.98
UPF1-210ENST00000600689 KLF18A0A0U1RQI7 1052 aa21.2■□□□□ 0.98
UPF1-210ENST00000600689 HSPD1P10809 573 aaKnown RBP21.2■□□□□ 0.98
UPF1-210ENST00000600689 ZNF594Q96JF6 807 aaPredicted RBP21.2■□□□□ 0.98
UPF1-210ENST00000600689 DESI2Q9BSY9 194 aa21.2■□□□□ 0.98
UPF1-210ENST00000600689 FAM53CQ9NYF3 392 aa21.2■□□□□ 0.98
UPF1-210ENST00000600689 IMPACTQ9P2X3 320 aa21.2■□□□□ 0.98
UPF1-210ENST00000600689 NCAPHQ15003 741 aa21.19■□□□□ 0.98
UPF1-210ENST00000600689 CCDC93Q567U6 631 aa21.19■□□□□ 0.98
UPF1-210ENST00000600689 SMARCE1Q969G3 411 aa21.19■□□□□ 0.98
UPF1-210ENST00000600689 CLIC6Q96NY7 704 aa21.19■□□□□ 0.98
UPF1-210ENST00000600689 OAS2P29728 719 aaKnown RBP21.19■□□□□ 0.98
UPF1-210ENST00000600689 SASH3O75995 380 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 KRBA2Q6ZNG9 492 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 KBTBD3Q8NAB2 608 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 PAG1Q9NWQ8 432 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 PKD1L3Q7Z443 1732 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 WDR17Q8IZU2 1322 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 NBPF26B4DH59 902 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 TOP1P11387 765 aaKnown RBP21.18■□□□□ 0.98
UPF1-210ENST00000600689 NLRP12P59046 1061 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 NBPF14Q5TI25 921 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 NBPF10Q6P3W6 841 aaKnown RBP21.18■□□□□ 0.98
UPF1-210ENST00000600689 NBPF15Q8N660 670 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 ZCRB1Q8TBF4 217 aaKnown RBP21.18■□□□□ 0.98
UPF1-210ENST00000600689 MRC1P22897 1456 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 PSDA5PKW4 1024 aaPredicted RBP21.18■□□□□ 0.98
UPF1-210ENST00000600689 WDHD1O75717 1129 aaPredicted RBP21.18■□□□□ 0.98
UPF1-210ENST00000600689 ADKP55263 362 aaKnown RBP21.18■□□□□ 0.98
UPF1-210ENST00000600689 WDR24Q96S15 920 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 HAUS7Q99871 368 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 RTEL1Q9NZ71 1219 aa21.18■□□□□ 0.98
UPF1-210ENST00000600689 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.18■□□□□ 0.98
UPF1-210ENST00000600689 MYSM1Q5VVJ2 828 aa21.17■□□□□ 0.98
UPF1-210ENST00000600689 FANCLQ9NW38 375 aa21.17■□□□□ 0.98
UPF1-210ENST00000600689 IRX2Q9BZI1 471 aaPredicted RBP21.17■□□□□ 0.98
UPF1-210ENST00000600689 MROH7-TTC4A0A0A0MT08 1334 aa21.17■□□□□ 0.98
UPF1-210ENST00000600689 HMGB1P09429 215 aaKnown RBP21.16■□□□□ 0.98
UPF1-210ENST00000600689 EXOSC10Q01780 885 aaKnown RBP21.16■□□□□ 0.98
UPF1-210ENST00000600689 SYKP43405 635 aa21.16■□□□□ 0.98
UPF1-210ENST00000600689 TRIM65Q6PJ69 517 aa21.16■□□□□ 0.98
UPF1-210ENST00000600689 DENND2AQ9ULE3 1009 aa21.16■□□□□ 0.98
UPF1-210ENST00000600689 A1BGP04217 495 aa21.15■□□□□ 0.98
UPF1-210ENST00000600689 TTLL7Q6ZT98 887 aa21.15■□□□□ 0.98
UPF1-210ENST00000600689 M0R2C6 588 aa21.15■□□□□ 0.98
UPF1-210ENST00000600689 FOXN1O15353 648 aa21.15■□□□□ 0.98
UPF1-210ENST00000600689 ATP2B1P20020 1258 aa21.15■□□□□ 0.98
UPF1-210ENST00000600689 ZNF827Q17R98 1081 aa21.15■□□□□ 0.98
UPF1-210ENST00000600689 TRMT44Q8IYL2 757 aaKnown RBP21.15■□□□□ 0.98
UPF1-210ENST00000600689 RAD51AP2Q09MP3 1159 aa21.15■□□□□ 0.98
UPF1-210ENST00000600689 KCNG4Q8TDN1 519 aa21.15■□□□□ 0.98
UPF1-210ENST00000600689 TADA3O75528 432 aa21.14■□□□□ 0.98
UPF1-210ENST00000600689 ANO1Q5XXA6 986 aa21.14■□□□□ 0.98
UPF1-210ENST00000600689 MAST3O60307 1309 aa21.14■□□□□ 0.97
UPF1-210ENST00000600689 IFIT1P09914 478 aaKnown RBP21.14■□□□□ 0.97
UPF1-210ENST00000600689 CASQ1P31415 396 aa21.14■□□□□ 0.97
UPF1-210ENST00000600689 LMAN1P49257 510 aa21.14■□□□□ 0.97
UPF1-210ENST00000600689 SKIDA1Q1XH10 827 aa21.14■□□□□ 0.97
UPF1-210ENST00000600689 CPLX3Q8WVH0 158 aa21.14■□□□□ 0.97
UPF1-210ENST00000600689 COPRSQ9NQ92 184 aa21.14■□□□□ 0.97
UPF1-210ENST00000600689 PARP3Q9Y6F1 533 aa21.14■□□□□ 0.97
UPF1-210ENST00000600689 GLI3P10071 1580 aa21.14■□□□□ 0.97
UPF1-210ENST00000600689 SOS2Q07890 1332 aaPredicted RBP21.13■□□□□ 0.97
UPF1-210ENST00000600689 PCDH11XQ9BZA7 1347 aa21.13■□□□□ 0.97
UPF1-210ENST00000600689 PCDH11YQ9BZA8 1340 aa21.13■□□□□ 0.97
UPF1-210ENST00000600689 PRC1O43663 620 aa21.13■□□□□ 0.97
UPF1-210ENST00000600689 RFX5P48382 616 aaPredicted RBP21.13■□□□□ 0.97
UPF1-210ENST00000600689 PUF60Q9UHX1 559 aaKnown RBP21.13■□□□□ 0.97
UPF1-210ENST00000600689 ZNF330Q9Y3S2 320 aaPredicted RBP21.13■□□□□ 0.97
UPF1-210ENST00000600689 COL5A2P05997 1499 aaPredicted RBP21.13■□□□□ 0.97
UPF1-210ENST00000600689 SMC1AQ14683 1233 aaKnown RBP21.13■□□□□ 0.97
UPF1-210ENST00000600689 CERS3Q8IU89 383 aa21.13■□□□□ 0.97
UPF1-210ENST00000600689 REXO1L1PQ8IX06 675 aa21.13■□□□□ 0.97
UPF1-210ENST00000600689 PHKBQ93100 1093 aa21.13■□□□□ 0.97
UPF1-210ENST00000600689 AFDNP55196 1824 aaKnown RBP21.13■□□□□ 0.97
UPF1-210ENST00000600689 UBE2Q2LH0YL09 131 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms