RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 MAP3K11Q16584 847 aa22.02■■□□□ 1.12
SHKBP1-223ENST00000600552 IFNL1Q8IU54 200 aa22.02■■□□□ 1.12
SHKBP1-223ENST00000600552 TMEM39BQ9GZU3 492 aa22.02■■□□□ 1.12
SHKBP1-223ENST00000600552 IFIT1P09914 478 aaKnown RBP22.01■■□□□ 1.11
SHKBP1-223ENST00000600552 TNNI2P48788 182 aa22.01■■□□□ 1.11
SHKBP1-223ENST00000600552 SIL1Q9H173 461 aa22.01■■□□□ 1.11
SHKBP1-223ENST00000600552 ALDH1A1P00352 501 aa22■■□□□ 1.11
SHKBP1-223ENST00000600552 ZBTB48P10074 688 aaPredicted RBP22■■□□□ 1.11
SHKBP1-223ENST00000600552 ALDH1L2Q3SY69 923 aa22■■□□□ 1.11
SHKBP1-223ENST00000600552 ANKRD13AQ8IZ07 590 aa22■■□□□ 1.11
SHKBP1-223ENST00000600552 VGLL2Q8N8G2 317 aa22■■□□□ 1.11
SHKBP1-223ENST00000600552 TBC1D22AQ8WUA7 517 aa22■■□□□ 1.11
SHKBP1-223ENST00000600552 NOB1Q9ULX3 412 aaKnown RBP22■■□□□ 1.11
SHKBP1-223ENST00000600552 EYA2O00167 538 aa21.99■■□□□ 1.11
SHKBP1-223ENST00000600552 IGF2BP3O00425 579 aaKnown RBP eCLIP21.99■■□□□ 1.11
SHKBP1-223ENST00000600552 GJA5P36382 358 aa21.99■■□□□ 1.11
SHKBP1-223ENST00000600552 INHBEP58166 350 aa21.99■■□□□ 1.11
SHKBP1-223ENST00000600552 PUM3Q15397 648 aaKnown RBP21.99■■□□□ 1.11
SHKBP1-223ENST00000600552 TEKT1Q969V4 418 aa21.99■■□□□ 1.11
SHKBP1-223ENST00000600552 UBTFL1P0CB47 393 aaPredicted RBP21.98■■□□□ 1.11
SHKBP1-223ENST00000600552 SLC5A1P13866 664 aa21.98■■□□□ 1.11
SHKBP1-223ENST00000600552 PKN2Q16513 984 aaKnown RBP21.98■■□□□ 1.11
SHKBP1-223ENST00000600552 OPTNQ96CV9 577 aa21.98■■□□□ 1.11
SHKBP1-223ENST00000600552 CNKSR2Q8WXI2 1034 aa21.97■■□□□ 1.11
SHKBP1-223ENST00000600552 TMOD2Q9NZR1 351 aa21.97■■□□□ 1.11
SHKBP1-223ENST00000600552 RFX5P48382 616 aaPredicted RBP21.96■■□□□ 1.11
SHKBP1-223ENST00000600552 OTUD7BQ6GQQ9 843 aa21.96■■□□□ 1.11
SHKBP1-223ENST00000600552 TEPSINQ96N21 525 aa21.96■■□□□ 1.11
SHKBP1-223ENST00000600552 ARAP2Q8WZ64 1704 aa21.95■■□□□ 1.1
SHKBP1-223ENST00000600552 MAP3K9P80192 1104 aa21.95■■□□□ 1.1
SHKBP1-223ENST00000600552 FBXO46Q6PJ61 603 aaPredicted RBP21.95■■□□□ 1.1
SHKBP1-223ENST00000600552 TRIM17Q9Y577 477 aa21.95■■□□□ 1.1
SHKBP1-223ENST00000600552 UNCXA6NJT0 531 aa21.94■■□□□ 1.1
SHKBP1-223ENST00000600552 FGFR2P21802 821 aa21.94■■□□□ 1.1
SHKBP1-223ENST00000600552 HDLBPQ00341 1268 aaKnown RBP21.94■■□□□ 1.1
SHKBP1-223ENST00000600552 NOM1Q5C9Z4 860 aaKnown RBP21.94■■□□□ 1.1
SHKBP1-223ENST00000600552 LPIN2Q92539 896 aa21.94■■□□□ 1.1
SHKBP1-223ENST00000600552 CSADQ9Y600 493 aa21.94■■□□□ 1.1
SHKBP1-223ENST00000600552 LRRFIP2Q9Y608 721 aaKnown RBP21.94■■□□□ 1.1
SHKBP1-223ENST00000600552 CRHR2Q13324 411 aa21.93■■□□□ 1.1
SHKBP1-223ENST00000600552 VGLL4Q14135 290 aa21.93■■□□□ 1.1
SHKBP1-223ENST00000600552 ATP2B3Q16720 1220 aa21.93■■□□□ 1.1
SHKBP1-223ENST00000600552 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.93■■□□□ 1.1
SHKBP1-223ENST00000600552 ATG9AQ7Z3C6 839 aa21.93■■□□□ 1.1
SHKBP1-223ENST00000600552 OTUD5Q96G74 571 aa21.93■■□□□ 1.1
SHKBP1-223ENST00000600552 CFHR5Q9BXR6 569 aa21.93■■□□□ 1.1
SHKBP1-223ENST00000600552 API5Q9BZZ5 524 aaKnown RBP21.93■■□□□ 1.1
SHKBP1-223ENST00000600552 CEP126Q9P2H0 1117 aa21.93■■□□□ 1.1
SHKBP1-223ENST00000600552 PA2G4Q9UQ80 394 aaKnown RBP21.93■■□□□ 1.1
SHKBP1-223ENST00000600552 OTOFQ9HC10 1997 aa21.92■■□□□ 1.1
SHKBP1-223ENST00000600552 MAST3O60307 1309 aa21.92■■□□□ 1.1
SHKBP1-223ENST00000600552 TRMT2AQ8IZ69 625 aaKnown RBP21.92■■□□□ 1.1
SHKBP1-223ENST00000600552 CD99L2Q8TCZ2 262 aa21.92■■□□□ 1.1
SHKBP1-223ENST00000600552 ZDHHC15Q96MV8 337 aa21.92■■□□□ 1.1
SHKBP1-223ENST00000600552 PTPN18Q99952 460 aa21.92■■□□□ 1.1
SHKBP1-223ENST00000600552 APOBEC3HQ6NTF7 200 aaKnown RBP21.91■■□□□ 1.1
SHKBP1-223ENST00000600552 WDR66Q8TBY9 1149 aa21.91■■□□□ 1.1
SHKBP1-223ENST00000600552 MYH13Q9UKX3 1938 aa21.9■■□□□ 1.1
SHKBP1-223ENST00000600552 CCL15-CCL14A0A0B4J2E2 113 aa21.9■■□□□ 1.1
SHKBP1-223ENST00000600552 CCL15Q16663 113 aa21.9■■□□□ 1.1
SHKBP1-223ENST00000600552 MIGA2Q7L4E1 593 aa21.9■■□□□ 1.1
SHKBP1-223ENST00000600552 ZKSCAN4Q969J2 545 aaPredicted RBP21.9■■□□□ 1.1
SHKBP1-223ENST00000600552 GNL3LQ9NVN8 582 aaKnown RBP21.9■■□□□ 1.1
SHKBP1-223ENST00000600552 AK9Q5TCS8 1911 aa21.9■■□□□ 1.1
SHKBP1-223ENST00000600552 TCP10Q12799 353 aa21.89■■□□□ 1.09
SHKBP1-223ENST00000600552 DIXDC1Q155Q3 683 aa21.89■■□□□ 1.09
SHKBP1-223ENST00000600552 OTOP1Q7RTM1 612 aa21.89■■□□□ 1.09
SHKBP1-223ENST00000600552 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.89■■□□□ 1.09
SHKBP1-223ENST00000600552 ERO1AQ96HE7 468 aa21.89■■□□□ 1.09
SHKBP1-223ENST00000600552 WRNIP1Q96S55 665 aa21.89■■□□□ 1.09
SHKBP1-223ENST00000600552 MEIS3Q99687 375 aa21.89■■□□□ 1.09
SHKBP1-223ENST00000600552 KIF16BQ96L93 1317 aa21.88■■□□□ 1.09
SHKBP1-223ENST00000600552 HHIPL2Q6UWX4 724 aa21.88■■□□□ 1.09
SHKBP1-223ENST00000600552 BRI3BPQ8WY22 251 aa21.88■■□□□ 1.09
SHKBP1-223ENST00000600552 HDAC5Q9UQL6 1122 aa21.88■■□□□ 1.09
SHKBP1-223ENST00000600552 SUGT1Q9Y2Z0 365 aa21.88■■□□□ 1.09
SHKBP1-223ENST00000600552 LDHBP07195 334 aaKnown RBP21.87■■□□□ 1.09
SHKBP1-223ENST00000600552 CT47B1P0C2W7 299 aaPredicted RBP21.87■■□□□ 1.09
SHKBP1-223ENST00000600552 ADORA1P30542 326 aa21.87■■□□□ 1.09
SHKBP1-223ENST00000600552 PHKA1P46020 1223 aa21.87■■□□□ 1.09
SHKBP1-223ENST00000600552 GTF2A2P52657 109 aa21.87■■□□□ 1.09
SHKBP1-223ENST00000600552 RARSP54136 660 aaKnown RBP21.87■■□□□ 1.09
SHKBP1-223ENST00000600552 SP3Q02447 781 aa21.87■■□□□ 1.09
SHKBP1-223ENST00000600552 TAF1CQ15572 869 aaPredicted RBP21.87■■□□□ 1.09
SHKBP1-223ENST00000600552 MS4A4AQ96JQ5 239 aa21.87■■□□□ 1.09
SHKBP1-223ENST00000600552 MRIQ9BWK5 157 aa21.87■■□□□ 1.09
SHKBP1-223ENST00000600552 PDE4DIPQ5VU43 2346 aa21.86■■□□□ 1.09
SHKBP1-223ENST00000600552 TESPA1A2RU30 521 aaPredicted RBP21.86■■□□□ 1.09
SHKBP1-223ENST00000600552 CIAO1O76071 339 aa21.86■■□□□ 1.09
SHKBP1-223ENST00000600552 ECM2O94769 699 aaPredicted RBP21.86■■□□□ 1.09
SHKBP1-223ENST00000600552 PRDX5P30044 214 aa21.86■■□□□ 1.09
SHKBP1-223ENST00000600552 IL15P40933 162 aaPredicted RBP21.86■■□□□ 1.09
SHKBP1-223ENST00000600552 FAM83AQ86UY5 434 aa21.86■■□□□ 1.09
SHKBP1-223ENST00000600552 EFCC1Q9HA90 598 aa21.86■■□□□ 1.09
SHKBP1-223ENST00000600552 USP40Q9NVE5 1235 aa21.86■■□□□ 1.09
SHKBP1-223ENST00000600552 DAGLAQ9Y4D2 1042 aa21.86■■□□□ 1.09
SHKBP1-223ENST00000600552 CCER2I3L3R5 266 aa21.85■■□□□ 1.09
SHKBP1-223ENST00000600552 DCAF15Q66K64 600 aa21.85■■□□□ 1.09
SHKBP1-223ENST00000600552 CDC42EP5Q6NZY7 148 aa21.85■■□□□ 1.09
SHKBP1-223ENST00000600552 FRAT1Q92837 279 aaPredicted RBP21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms