RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 COPRSQ9NQ92 184 aa19.7■□□□□ 0.74
VRK3-221ENST00000600284 IL15P40933 162 aaPredicted RBP19.69■□□□□ 0.74
VRK3-221ENST00000600284 MIER1Q8N108 512 aa19.69■□□□□ 0.74
VRK3-221ENST00000600284 TDRD3Q9H7E2 651 aaKnown RBP19.69■□□□□ 0.74
VRK3-221ENST00000600284 MAST3O60307 1309 aa19.69■□□□□ 0.74
VRK3-221ENST00000600284 AOX1Q06278 1338 aa19.69■□□□□ 0.74
VRK3-221ENST00000600284 AKAP11Q9UKA4 1901 aa19.68■□□□□ 0.74
VRK3-221ENST00000600284 ZBTB22O15209 634 aa19.68■□□□□ 0.74
VRK3-221ENST00000600284 SREBF2Q12772 1141 aa19.68■□□□□ 0.74
VRK3-221ENST00000600284 NBPF12Q5TAG4 269 aaPredicted RBP19.68■□□□□ 0.74
VRK3-221ENST00000600284 WDR66Q8TBY9 1149 aa19.68■□□□□ 0.74
VRK3-221ENST00000600284 TEKT1Q969V4 418 aa19.68■□□□□ 0.74
VRK3-221ENST00000600284 SLC10A4Q96EP9 437 aa19.68■□□□□ 0.74
VRK3-221ENST00000600284 SIL1Q9H173 461 aa19.68■□□□□ 0.74
VRK3-221ENST00000600284 ARAP2Q8WZ64 1704 aa19.68■□□□□ 0.74
VRK3-221ENST00000600284 TRIM27P14373 513 aa19.67■□□□□ 0.74
VRK3-221ENST00000600284 IREB2P48200 963 aaKnown RBP19.67■□□□□ 0.74
VRK3-221ENST00000600284 TNNI2P48788 182 aa19.67■□□□□ 0.74
VRK3-221ENST00000600284 INHBEP58166 350 aa19.67■□□□□ 0.74
VRK3-221ENST00000600284 MTX1Q13505 466 aa19.67■□□□□ 0.74
VRK3-221ENST00000600284 GRIK5Q16478 980 aa19.67■□□□□ 0.74
VRK3-221ENST00000600284 ATP2B3Q16720 1220 aa19.67■□□□□ 0.74
VRK3-221ENST00000600284 SPRYD7Q5W111 196 aa19.67■□□□□ 0.74
VRK3-221ENST00000600284 ATF7IPQ6VMQ6 1270 aa19.67■□□□□ 0.74
VRK3-221ENST00000600284 MCOLN1Q9GZU1 580 aa19.67■□□□□ 0.74
VRK3-221ENST00000600284 GNL3LQ9NVN8 582 aaKnown RBP19.67■□□□□ 0.74
VRK3-221ENST00000600284 CASP8AP2Q9UKL3 1982 aa19.66■□□□□ 0.74
VRK3-221ENST00000600284 USP2O75604 605 aaPredicted RBP19.66■□□□□ 0.74
VRK3-221ENST00000600284 ZBTB48P10074 688 aaPredicted RBP19.66■□□□□ 0.74
VRK3-221ENST00000600284 HHIPL2Q6UWX4 724 aa19.66■□□□□ 0.74
VRK3-221ENST00000600284 ZDHHC15Q96MV8 337 aa19.66■□□□□ 0.74
VRK3-221ENST00000600284 SSC5DA1L4H1 1573 aa19.66■□□□□ 0.74
VRK3-221ENST00000600284 BCAR3O75815 825 aa19.65■□□□□ 0.74
VRK3-221ENST00000600284 HNRNPUQ00839 825 aaKnown RBP eCLIP19.65■□□□□ 0.74
VRK3-221ENST00000600284 DGKZQ13574 1117 aa19.65■□□□□ 0.74
VRK3-221ENST00000600284 CFHR5Q9BXR6 569 aa19.65■□□□□ 0.74
VRK3-221ENST00000600284 FZD1Q9UP38 647 aa19.65■□□□□ 0.74
VRK3-221ENST00000600284 MANSC4A6NHS7 340 aaPredicted RBP19.64■□□□□ 0.73
VRK3-221ENST00000600284 SEMA3EO15041 775 aa19.64■□□□□ 0.73
VRK3-221ENST00000600284 NOM1Q5C9Z4 860 aaKnown RBP19.64■□□□□ 0.73
VRK3-221ENST00000600284 FKBP1CQ5VVH2 108 aa19.64■□□□□ 0.73
VRK3-221ENST00000600284 ANKRD13AQ8IZ07 590 aa19.64■□□□□ 0.73
VRK3-221ENST00000600284 FRAT1Q92837 279 aaPredicted RBP19.64■□□□□ 0.73
VRK3-221ENST00000600284 TEPSINQ96N21 525 aa19.64■□□□□ 0.73
VRK3-221ENST00000600284 PA2G4Q9UQ80 394 aaKnown RBP19.64■□□□□ 0.73
VRK3-221ENST00000600284 TCP10L2B9ZVM9 353 aa19.63■□□□□ 0.73
VRK3-221ENST00000600284 SRGAP3O43295 1099 aa19.63■□□□□ 0.73
VRK3-221ENST00000600284 ALDH1A1P00352 501 aa19.63■□□□□ 0.73
VRK3-221ENST00000600284 MKRN3Q13064 507 aaKnown RBP19.63■□□□□ 0.73
VRK3-221ENST00000600284 APOBEC3HQ6NTF7 200 aaKnown RBP19.63■□□□□ 0.73
VRK3-221ENST00000600284 SALL1Q9NSC2 1324 aa19.62■□□□□ 0.73
VRK3-221ENST00000600284 GNAI2P04899 355 aa19.62■□□□□ 0.73
VRK3-221ENST00000600284 ZKSCAN2Q63HK3 967 aa19.62■□□□□ 0.73
VRK3-221ENST00000600284 FAM83AQ86UY5 434 aa19.62■□□□□ 0.73
VRK3-221ENST00000600284 WNK4Q96J92 1243 aa19.62■□□□□ 0.73
VRK3-221ENST00000600284 TMOD2Q9NZR1 351 aa19.62■□□□□ 0.73
VRK3-221ENST00000600284 DENND2AQ9ULE3 1009 aa19.62■□□□□ 0.73
VRK3-221ENST00000600284 TBC1D8O95759 1140 aa19.61■□□□□ 0.73
VRK3-221ENST00000600284 CLMNQ96JQ2 1002 aa19.61■□□□□ 0.73
VRK3-221ENST00000600284 TMEM39BQ9GZU3 492 aa19.61■□□□□ 0.73
VRK3-221ENST00000600284 AKAP2Q9Y2D5 859 aa19.61■□□□□ 0.73
VRK3-221ENST00000600284 CCDC85CA6NKD9 419 aa19.6■□□□□ 0.73
VRK3-221ENST00000600284 CTU1Q7Z7A3 348 aaKnown RBP19.6■□□□□ 0.73
VRK3-221ENST00000600284 CLUAP1Q96AJ1 413 aa19.6■□□□□ 0.73
VRK3-221ENST00000600284 HOOK2Q96ED9 719 aa19.6■□□□□ 0.73
VRK3-221ENST00000600284 LDHBP07195 334 aaKnown RBP19.59■□□□□ 0.73
VRK3-221ENST00000600284 PHKA1P46020 1223 aa19.59■□□□□ 0.73
VRK3-221ENST00000600284 CCDC102BQ68D86 513 aa19.59■□□□□ 0.73
VRK3-221ENST00000600284 ZGPATQ8N5A5 531 aaKnown RBP19.59■□□□□ 0.73
VRK3-221ENST00000600284 PDS5AQ29RF7 1337 aaKnown RBP19.58■□□□□ 0.73
VRK3-221ENST00000600284 GPR25O00155 361 aa19.58■□□□□ 0.72
VRK3-221ENST00000600284 TIMM10P62072 90 aa19.58■□□□□ 0.72
VRK3-221ENST00000600284 MAP3K9P80192 1104 aa19.58■□□□□ 0.72
VRK3-221ENST00000600284 PKN2Q16513 984 aaKnown RBP19.58■□□□□ 0.72
VRK3-221ENST00000600284 IFNL1Q8IU54 200 aa19.58■□□□□ 0.72
VRK3-221ENST00000600284 ZNF296Q8WUU4 475 aaPredicted RBP19.58■□□□□ 0.72
VRK3-221ENST00000600284 TNNQ9UQP3 1299 aa19.58■□□□□ 0.72
VRK3-221ENST00000600284 PRDX5P30044 214 aa19.57■□□□□ 0.72
VRK3-221ENST00000600284 CACNB3P54284 484 aa19.57■□□□□ 0.72
VRK3-221ENST00000600284 TFCP2Q12800 502 aa19.57■□□□□ 0.72
VRK3-221ENST00000600284 OTUD7BQ6GQQ9 843 aa19.57■□□□□ 0.72
VRK3-221ENST00000600284 CDAN1Q8IWY9 1227 aa19.57■□□□□ 0.72
VRK3-221ENST00000600284 TMEM57Q8N5G2 664 aa19.57■□□□□ 0.72
VRK3-221ENST00000600284 A0A1B0GUL7 405 aa19.56■□□□□ 0.72
VRK3-221ENST00000600284 TESPA1A2RU30 521 aaPredicted RBP19.56■□□□□ 0.72
VRK3-221ENST00000600284 ADORA1P30542 326 aa19.56■□□□□ 0.72
VRK3-221ENST00000600284 RGS19P49795 217 aa19.56■□□□□ 0.72
VRK3-221ENST00000600284 MVPQ14764 893 aaKnown RBP19.56■□□□□ 0.72
VRK3-221ENST00000600284 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.56■□□□□ 0.72
VRK3-221ENST00000600284 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.56■□□□□ 0.72
VRK3-221ENST00000600284 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.56■□□□□ 0.72
VRK3-221ENST00000600284 DAGLAQ9Y4D2 1042 aa19.56■□□□□ 0.72
VRK3-221ENST00000600284 CSADQ9Y600 493 aa19.56■□□□□ 0.72
VRK3-221ENST00000600284 RPAP1Q9BWH6 1393 aaPredicted RBP19.56■□□□□ 0.72
VRK3-221ENST00000600284 ZBED9Q6R2W3 1325 aa19.55■□□□□ 0.72
VRK3-221ENST00000600284 MYH13Q9UKX3 1938 aa19.55■□□□□ 0.72
VRK3-221ENST00000600284 FKTNO75072 461 aa19.55■□□□□ 0.72
VRK3-221ENST00000600284 GJA5P36382 358 aa19.55■□□□□ 0.72
VRK3-221ENST00000600284 G3BP1Q13283 466 aaKnown RBP eCLIP19.55■□□□□ 0.72
VRK3-221ENST00000600284 DCAF15Q66K64 600 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms