RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 SUPT20HL1Q3ZLR7 823 aa17.47■□□□□ 0.39
LIG1-218ENST00000599322 ARMC9Q7Z3E5 817 aa17.47■□□□□ 0.39
LIG1-218ENST00000599322 ZGPATQ8N5A5 531 aaKnown RBP17.47■□□□□ 0.39
LIG1-218ENST00000599322 TEKT1Q969V4 418 aa17.47■□□□□ 0.39
LIG1-218ENST00000599322 NEUROD6Q96NK8 337 aa17.47■□□□□ 0.39
LIG1-218ENST00000599322 TMOD2Q9NZR1 351 aa17.47■□□□□ 0.39
LIG1-218ENST00000599322 DENND2AQ9ULE3 1009 aa17.47■□□□□ 0.39
LIG1-218ENST00000599322 PPP2R3BQ9Y5P8 575 aa17.47■□□□□ 0.39
LIG1-218ENST00000599322 ATP8B2P98198 1209 aa17.46■□□□□ 0.39
LIG1-218ENST00000599322 CLRN2A0PK11 232 aa17.45■□□□□ 0.38
LIG1-218ENST00000599322 FAM155AB1AL88 458 aaPredicted RBP17.45■□□□□ 0.38
LIG1-218ENST00000599322 ZBTB7BO15156 539 aaPredicted RBP17.45■□□□□ 0.38
LIG1-218ENST00000599322 CRKP46108 304 aa17.45■□□□□ 0.38
LIG1-218ENST00000599322 TFCP2Q12800 502 aa17.45■□□□□ 0.38
LIG1-218ENST00000599322 ZBED3Q96IU2 234 aaPredicted RBP17.45■□□□□ 0.38
LIG1-218ENST00000599322 PRMT6Q96LA8 375 aaPredicted RBP17.45■□□□□ 0.38
LIG1-218ENST00000599322 DEFB129Q9H1M3 183 aa17.45■□□□□ 0.38
LIG1-218ENST00000599322 A0A1B0GUL7 405 aa17.44■□□□□ 0.38
LIG1-218ENST00000599322 CA12O43570 354 aa17.44■□□□□ 0.38
LIG1-218ENST00000599322 PPP1R12BO60237 982 aaPredicted RBP17.44■□□□□ 0.38
LIG1-218ENST00000599322 SURF6O75683 361 aaKnown RBP17.44■□□□□ 0.38
LIG1-218ENST00000599322 TIMM10P62072 90 aa17.44■□□□□ 0.38
LIG1-218ENST00000599322 PANK1Q8TE04 598 aa17.44■□□□□ 0.38
LIG1-218ENST00000599322 MRIQ9BWK5 157 aa17.44■□□□□ 0.38
LIG1-218ENST00000599322 DDX19BQ9UMR2 479 aa17.44■□□□□ 0.38
LIG1-218ENST00000599322 COL1A1P02452 1464 aaPredicted RBP17.44■□□□□ 0.38
LIG1-218ENST00000599322 PNMA6EA0A0J9YXQ4 647 aa17.43■□□□□ 0.38
LIG1-218ENST00000599322 LDHBP07195 334 aaKnown RBP17.43■□□□□ 0.38
LIG1-218ENST00000599322 RLBP1P12271 317 aa17.43■□□□□ 0.38
LIG1-218ENST00000599322 PRAMEF18Q5VWM3 479 aa17.43■□□□□ 0.38
LIG1-218ENST00000599322 SPTY2D1Q68D10 685 aaPredicted RBP17.43■□□□□ 0.38
LIG1-218ENST00000599322 CCDC102BQ68D86 513 aa17.43■□□□□ 0.38
LIG1-218ENST00000599322 SLF2Q8IX21 1173 aa17.43■□□□□ 0.38
LIG1-218ENST00000599322 SCAF8Q9UPN6 1271 aaKnown RBP17.43■□□□□ 0.38
LIG1-218ENST00000599322 HSP90AB4PQ58FF6 505 aa17.42■□□□□ 0.38
LIG1-218ENST00000599322 REM2Q8IYK8 340 aaPredicted RBP17.42■□□□□ 0.38
LIG1-218ENST00000599322 SSH3Q8TE77 659 aa17.42■□□□□ 0.38
LIG1-218ENST00000599322 XAGE2Q96GT9 111 aa17.42■□□□□ 0.38
LIG1-218ENST00000599322 TDRD3Q9H7E2 651 aaKnown RBP17.42■□□□□ 0.38
LIG1-218ENST00000599322 C1orf115Q9H7X2 142 aa17.42■□□□□ 0.38
LIG1-218ENST00000599322 ZNF70Q9UC06 446 aaPredicted RBP17.42■□□□□ 0.38
LIG1-218ENST00000599322 PAPPA2Q9BXP8 1791 aa17.42■□□□□ 0.38
LIG1-218ENST00000599322 HMMRO75330 724 aa17.41■□□□□ 0.38
LIG1-218ENST00000599322 PHKA1P46020 1223 aa17.41■□□□□ 0.38
LIG1-218ENST00000599322 POLA2Q14181 598 aa17.41■□□□□ 0.38
LIG1-218ENST00000599322 SPDYE2Q495Y8 402 aa17.41■□□□□ 0.38
LIG1-218ENST00000599322 CCDC158Q5M9N0 1113 aa17.41■□□□□ 0.38
LIG1-218ENST00000599322 HHIPL2Q6UWX4 724 aa17.41■□□□□ 0.38
LIG1-218ENST00000599322 ERC1Q8IUD2 1116 aa17.41■□□□□ 0.38
LIG1-218ENST00000599322 HOOK2Q96ED9 719 aa17.41■□□□□ 0.38
LIG1-218ENST00000599322 CCDC85CA6NKD9 419 aa17.4■□□□□ 0.38
LIG1-218ENST00000599322 UBE2Q2LH0YL09 131 aa17.4■□□□□ 0.38
LIG1-218ENST00000599322 UQCRFS1P1P0C7P4 283 aa17.4■□□□□ 0.38
LIG1-218ENST00000599322 ADORA1P30542 326 aa17.4■□□□□ 0.38
LIG1-218ENST00000599322 PRKG1Q13976 671 aa17.4■□□□□ 0.38
LIG1-218ENST00000599322 RASA3Q14644 834 aa17.4■□□□□ 0.38
LIG1-218ENST00000599322 ZDHHC15Q96MV8 337 aa17.4■□□□□ 0.38
LIG1-218ENST00000599322 MCOLN1Q9GZU1 580 aa17.4■□□□□ 0.38
LIG1-218ENST00000599322 GPR108Q9NPR9 543 aa17.4■□□□□ 0.38
LIG1-218ENST00000599322 ANGEL1Q9UNK9 670 aaKnown RBP17.4■□□□□ 0.38
LIG1-218ENST00000599322 ECM29Q5VYK3 1845 aa17.4■□□□□ 0.38
LIG1-218ENST00000599322 IREB2P48200 963 aaKnown RBP17.39■□□□□ 0.37
LIG1-218ENST00000599322 KIF23Q02241 960 aaPredicted RBP17.39■□□□□ 0.37
LIG1-218ENST00000599322 DZIP1Q86YF9 867 aaKnown RBP17.39■□□□□ 0.37
LIG1-218ENST00000599322 ABCF2Q9UG63 623 aa17.39■□□□□ 0.37
LIG1-218ENST00000599322 COG6Q9Y2V7 657 aa17.39■□□□□ 0.37
LIG1-218ENST00000599322 PCDHAC2Q9Y5I4 1007 aa17.39■□□□□ 0.37
LIG1-218ENST00000599322 TCP10L2B9ZVM9 353 aa17.38■□□□□ 0.37
LIG1-218ENST00000599322 ZBTB22O15209 634 aa17.38■□□□□ 0.37
LIG1-218ENST00000599322 PDE3AQ14432 1141 aa17.38■□□□□ 0.37
LIG1-218ENST00000599322 TTC39AQ5SRH9 613 aa17.38■□□□□ 0.37
LIG1-218ENST00000599322 RPAP2Q8IXW5 612 aaPredicted RBP17.38■□□□□ 0.37
LIG1-218ENST00000599322 SLC10A4Q96EP9 437 aa17.38■□□□□ 0.37
LIG1-218ENST00000599322 PDS5AQ29RF7 1337 aaKnown RBP17.38■□□□□ 0.37
LIG1-218ENST00000599322 SALL1Q9NSC2 1324 aa17.38■□□□□ 0.37
LIG1-218ENST00000599322 UNCXA6NJT0 531 aa17.37■□□□□ 0.37
LIG1-218ENST00000599322 SLC10A3P09131 477 aa17.37■□□□□ 0.37
LIG1-218ENST00000599322 CEP85Q6P2H3 762 aa17.37■□□□□ 0.37
LIG1-218ENST00000599322 ERICH6Q7L0X2 663 aa17.37■□□□□ 0.37
LIG1-218ENST00000599322 NOP58Q9Y2X3 529 aaKnown RBP17.37■□□□□ 0.37
LIG1-218ENST00000599322 LDHCP07864 332 aa17.36■□□□□ 0.37
LIG1-218ENST00000599322 RGS19P49795 217 aa17.36■□□□□ 0.37
LIG1-218ENST00000599322 GSTO1P78417 241 aa17.36■□□□□ 0.37
LIG1-218ENST00000599322 DGKZQ13574 1117 aa17.36■□□□□ 0.37
LIG1-218ENST00000599322 GRIK5Q16478 980 aa17.36■□□□□ 0.37
LIG1-218ENST00000599322 FKBP1CQ5VVH2 108 aa17.36■□□□□ 0.37
LIG1-218ENST00000599322 MOB2Q70IA6 237 aa17.36■□□□□ 0.37
LIG1-218ENST00000599322 YTHDC1Q96MU7 727 aaKnown RBP17.36■□□□□ 0.37
LIG1-218ENST00000599322 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.36■□□□□ 0.37
LIG1-218ENST00000599322 PRDX5P30044 214 aa17.35■□□□□ 0.37
LIG1-218ENST00000599322 RASGRF1Q13972 1273 aa17.35■□□□□ 0.37
LIG1-218ENST00000599322 TNNI3KQ59H18 835 aa17.35■□□□□ 0.37
LIG1-218ENST00000599322 NBPF12Q5TAG4 269 aaPredicted RBP17.35■□□□□ 0.37
LIG1-218ENST00000599322 FAM83AQ86UY5 434 aa17.35■□□□□ 0.37
LIG1-218ENST00000599322 SPATA5Q8NB90 893 aa17.35■□□□□ 0.37
LIG1-218ENST00000599322 CSRNP1Q96S65 589 aa17.35■□□□□ 0.37
LIG1-218ENST00000599322 NOL10Q9BSC4 688 aaKnown RBP17.35■□□□□ 0.37
LIG1-218ENST00000599322 RNF186Q9NXI6 227 aa17.35■□□□□ 0.37
LIG1-218ENST00000599322 SAGE1Q9NXZ1 904 aa17.35■□□□□ 0.37
LIG1-218ENST00000599322 FPGT-TNNI3KV9GXZ4 949 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms