RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 TBC1D22AQ8WUA7 517 aa12.93□□□□□ -0.34
LIG1-210ENST00000596332 FBXW7Q969H0 707 aa12.93□□□□□ -0.34
LIG1-210ENST00000596332 NSUN4Q96CB9 384 aaKnown RBP12.93□□□□□ -0.34
LIG1-210ENST00000596332 SUGT1Q9Y2Z0 365 aa12.93□□□□□ -0.34
LIG1-210ENST00000596332 SCN4AP35499 1836 aa12.92□□□□□ -0.34
LIG1-210ENST00000596332 TTC41PQ6P2S7 1318 aa12.92□□□□□ -0.34
LIG1-210ENST00000596332 F8W031 263 aaPredicted RBP12.92□□□□□ -0.34
LIG1-210ENST00000596332 WNT10BO00744 389 aa12.92□□□□□ -0.34
LIG1-210ENST00000596332 FRAT2O75474 233 aaPredicted RBP12.92□□□□□ -0.34
LIG1-210ENST00000596332 NEFLP07196 543 aa12.92□□□□□ -0.34
LIG1-210ENST00000596332 DIXDC1Q155Q3 683 aa12.92□□□□□ -0.34
LIG1-210ENST00000596332 NBPF9Q3BBW0 867 aa12.92□□□□□ -0.34
LIG1-210ENST00000596332 TBC1D10BQ4KMP7 808 aaPredicted RBP12.92□□□□□ -0.34
LIG1-210ENST00000596332 APOBEC3HQ6NTF7 200 aaKnown RBP12.92□□□□□ -0.34
LIG1-210ENST00000596332 ADGRA1Q86SQ6 560 aa12.92□□□□□ -0.34
LIG1-210ENST00000596332 FAM163AQ96GL9 167 aaPredicted RBP12.92□□□□□ -0.34
LIG1-210ENST00000596332 PRMT6Q96LA8 375 aaPredicted RBP12.92□□□□□ -0.34
LIG1-210ENST00000596332 GPBP1L1Q9HC44 474 aaPredicted RBP12.92□□□□□ -0.34
LIG1-210ENST00000596332 MYOZ2Q9NPC6 264 aa12.92□□□□□ -0.34
LIG1-210ENST00000596332 ADARB2Q9NS39 739 aaKnown RBP12.92□□□□□ -0.34
LIG1-210ENST00000596332 TTF2Q9UNY4 1162 aaKnown RBP12.92□□□□□ -0.34
LIG1-210ENST00000596332 HDLBPQ00341 1268 aaKnown RBP12.91□□□□□ -0.34
LIG1-210ENST00000596332 MECOMQ03112 1051 aa12.91□□□□□ -0.34
LIG1-210ENST00000596332 SLFNL1Q499Z3 407 aa12.91□□□□□ -0.34
LIG1-210ENST00000596332 USP50Q70EL3 339 aaPredicted RBP12.91□□□□□ -0.34
LIG1-210ENST00000596332 CCDC136Q96JN2 1154 aa12.91□□□□□ -0.34
LIG1-210ENST00000596332 SERPINA10Q9UK55 444 aa12.91□□□□□ -0.34
LIG1-210ENST00000596332 MYO5AQ9Y4I1 1855 aaKnown RBP12.91□□□□□ -0.34
LIG1-210ENST00000596332 GAKO14976 1311 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 TCRBV5S4A2TA0A5A2 114 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 IQCA1LA6NCM1 817 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 SPDYE2BA6NHP3 402 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 GOLIM4O00461 696 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 LDHBP07195 334 aaKnown RBP12.9□□□□□ -0.34
LIG1-210ENST00000596332 SPDYE6P0CI01 402 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 CRKP46108 304 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 MMP14P50281 582 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 CFAP100Q494V2 611 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 RBM26Q5T8P6 1007 aaKnown RBP12.9□□□□□ -0.34
LIG1-210ENST00000596332 HHIPL2Q6UWX4 724 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 DLK2Q6UY11 383 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 PAG1Q9NWQ8 432 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 ABCF2Q9UG63 623 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 DAGLAQ9Y4D2 1042 aa12.9□□□□□ -0.34
LIG1-210ENST00000596332 H7C1D1 291 aa12.89□□□□□ -0.35
LIG1-210ENST00000596332 MAP4K4O95819 1239 aaPredicted RBP12.89□□□□□ -0.35
LIG1-210ENST00000596332 KIF4BQ2VIQ3 1234 aa12.89□□□□□ -0.35
LIG1-210ENST00000596332 ZDHHC15Q96MV8 337 aa12.89□□□□□ -0.35
LIG1-210ENST00000596332 DNAJC2Q99543 621 aaKnown RBP12.89□□□□□ -0.35
LIG1-210ENST00000596332 MYH13Q9UKX3 1938 aa12.89□□□□□ -0.35
LIG1-210ENST00000596332 DOCK2Q92608 1830 aa12.88□□□□□ -0.35
LIG1-210ENST00000596332 GLRX3O76003 335 aaKnown RBP12.88□□□□□ -0.35
LIG1-210ENST00000596332 ITGBL1O95965 494 aaPredicted RBP12.88□□□□□ -0.35
LIG1-210ENST00000596332 GSPT1P15170 499 aaKnown RBP12.88□□□□□ -0.35
LIG1-210ENST00000596332 RHBDL3P58872 404 aa12.88□□□□□ -0.35
LIG1-210ENST00000596332 FMR1Q06787 632 aaKnown RBP eCLIP12.88□□□□□ -0.35
LIG1-210ENST00000596332 ERICH6Q7L0X2 663 aa12.88□□□□□ -0.35
LIG1-210ENST00000596332 GPR75-ASB3A0A0A6YYF3 556 aa12.87□□□□□ -0.35
LIG1-210ENST00000596332 LMOD1P29536 600 aaPredicted RBP12.87□□□□□ -0.35
LIG1-210ENST00000596332 SPTY2D1Q68D10 685 aaPredicted RBP12.87□□□□□ -0.35
LIG1-210ENST00000596332 PNMA8AQ86V59 439 aaPredicted RBP12.87□□□□□ -0.35
LIG1-210ENST00000596332 OGFOD1Q8N543 542 aa12.87□□□□□ -0.35
LIG1-210ENST00000596332 ZGPATQ8N5A5 531 aaKnown RBP12.87□□□□□ -0.35
LIG1-210ENST00000596332 KBTBD3Q8NAB2 608 aa12.87□□□□□ -0.35
LIG1-210ENST00000596332 ZC3H15Q8WU90 426 aaKnown RBP12.87□□□□□ -0.35
LIG1-210ENST00000596332 LRP2BPQ9P2M1 347 aa12.87□□□□□ -0.35
LIG1-210ENST00000596332 SCAF8Q9UPN6 1271 aaKnown RBP12.87□□□□□ -0.35
LIG1-210ENST00000596332 IGSF3O75054 1194 aa12.86□□□□□ -0.35
LIG1-210ENST00000596332 PDE6AP16499 860 aa12.86□□□□□ -0.35
LIG1-210ENST00000596332 PPP4CP60510 307 aa12.86□□□□□ -0.35
LIG1-210ENST00000596332 DLGAP5Q15398 846 aa12.86□□□□□ -0.35
LIG1-210ENST00000596332 SPDYE2Q495Y8 402 aa12.86□□□□□ -0.35
LIG1-210ENST00000596332 CDC42EP5Q6NZY7 148 aa12.86□□□□□ -0.35
LIG1-210ENST00000596332 TEKT1Q969V4 418 aa12.86□□□□□ -0.35
LIG1-210ENST00000596332 RIOK1Q9BRS2 568 aaKnown RBP12.86□□□□□ -0.35
LIG1-210ENST00000596332 TDRD3Q9H7E2 651 aaKnown RBP12.86□□□□□ -0.35
LIG1-210ENST00000596332 RAI14Q9P0K7 980 aa12.86□□□□□ -0.35
LIG1-210ENST00000596332 ZNF70Q9UC06 446 aaPredicted RBP12.86□□□□□ -0.35
LIG1-210ENST00000596332 HDAC9Q9UKV0 1011 aa12.86□□□□□ -0.35
LIG1-210ENST00000596332 MROH7-TTC4A0A0A0MT08 1334 aa12.86□□□□□ -0.35
LIG1-210ENST00000596332 CNTNAP1P78357 1384 aa12.85□□□□□ -0.35
LIG1-210ENST00000596332 RFX7Q2KHR2 1363 aa12.85□□□□□ -0.35
LIG1-210ENST00000596332 ERC2O15083 957 aa12.85□□□□□ -0.35
LIG1-210ENST00000596332 IDH1O75874 414 aaKnown RBP12.85□□□□□ -0.35
LIG1-210ENST00000596332 TOMM70O94826 608 aa12.85□□□□□ -0.35
LIG1-210ENST00000596332 ADD2P35612 726 aa12.85□□□□□ -0.35
LIG1-210ENST00000596332 DYNLL1P63167 89 aaKnown RBP12.85□□□□□ -0.35
LIG1-210ENST00000596332 TTF1Q15361 905 aaPredicted RBP12.85□□□□□ -0.35
LIG1-210ENST00000596332 EAPPQ56P03 285 aaPredicted RBP12.85□□□□□ -0.35
LIG1-210ENST00000596332 TTC22Q5TAA0 569 aa12.85□□□□□ -0.35
LIG1-210ENST00000596332 ANGEL2Q5VTE6 544 aaKnown RBP12.85□□□□□ -0.35
LIG1-210ENST00000596332 MAP1SQ66K74 1059 aaPredicted RBP12.85□□□□□ -0.35
LIG1-210ENST00000596332 LDHDQ86WU2 507 aa12.85□□□□□ -0.35
LIG1-210ENST00000596332 MAGEB6Q8N7X4 407 aa12.85□□□□□ -0.35
LIG1-210ENST00000596332 WDHD1O75717 1129 aaPredicted RBP12.84□□□□□ -0.35
LIG1-210ENST00000596332 CACNB3P54284 484 aa12.84□□□□□ -0.35
LIG1-210ENST00000596332 NFIAQ12857 509 aa12.84□□□□□ -0.35
LIG1-210ENST00000596332 SLC9C2Q5TAH2 1124 aa12.84□□□□□ -0.35
LIG1-210ENST00000596332 CHADLQ6NUI6 762 aa12.84□□□□□ -0.35
LIG1-210ENST00000596332 CDAN1Q8IWY9 1227 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms