RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 ZBTB4Q9P1Z0 1013 aaPredicted RBP30.05■■■□□ 2.4
LSM4-202ENST00000593564 TBC1D22AQ8WUA7 517 aa30.04■■■□□ 2.4
LSM4-202ENST00000593564 IQSEC3Q9UPP2 1182 aaPredicted RBP30.04■■■□□ 2.4
LSM4-202ENST00000593564 LAMB1P07942 1786 aa30.03■■■□□ 2.4
LSM4-202ENST00000593564 FBXO46Q6PJ61 603 aaPredicted RBP30.03■■■□□ 2.4
LSM4-202ENST00000593564 KLHDC4Q8TBB5 520 aa30.03■■■□□ 2.4
LSM4-202ENST00000593564 TEPSINQ96N21 525 aa30.03■■■□□ 2.4
LSM4-202ENST00000593564 IGF2BP3O00425 579 aaKnown RBP eCLIP30.02■■■□□ 2.4
LSM4-202ENST00000593564 FRAT2O75474 233 aaPredicted RBP30.02■■■□□ 2.4
LSM4-202ENST00000593564 GJA5P36382 358 aa30.02■■■□□ 2.4
LSM4-202ENST00000593564 HDLBPQ00341 1268 aaKnown RBP30.02■■■□□ 2.4
LSM4-202ENST00000593564 CHAF1AQ13111 956 aaPredicted RBP30.02■■■□□ 2.4
LSM4-202ENST00000593564 GRIK5Q16478 980 aa30.02■■■□□ 2.4
LSM4-202ENST00000593564 KIF16BQ96L93 1317 aa30.01■■■□□ 2.4
LSM4-202ENST00000593564 ALDH1L2Q3SY69 923 aa30.01■■■□□ 2.39
LSM4-202ENST00000593564 PDE4DIPQ5VU43 2346 aa30.01■■■□□ 2.39
LSM4-202ENST00000593564 TCP10L2B9ZVM9 353 aa30■■■□□ 2.39
LSM4-202ENST00000593564 TNNI2P48788 182 aa30■■■□□ 2.39
LSM4-202ENST00000593564 CDAN1Q8IWY9 1227 aa30■■■□□ 2.39
LSM4-202ENST00000593564 BCAMP50895 628 aa29.99■■■□□ 2.39
LSM4-202ENST00000593564 PUM3Q15397 648 aaKnown RBP29.99■■■□□ 2.39
LSM4-202ENST00000593564 TESPA1A2RU30 521 aaPredicted RBP29.98■■■□□ 2.39
LSM4-202ENST00000593564 FGFR2P21802 821 aa29.98■■■□□ 2.39
LSM4-202ENST00000593564 OTUD7BQ6GQQ9 843 aa29.98■■■□□ 2.39
LSM4-202ENST00000593564 TEKT1Q969V4 418 aa29.98■■■□□ 2.39
LSM4-202ENST00000593564 TMEM39BQ9GZU3 492 aa29.98■■■□□ 2.39
LSM4-202ENST00000593564 IFIT1P09914 478 aaKnown RBP29.97■■■□□ 2.39
LSM4-202ENST00000593564 MRIQ9BWK5 157 aa29.97■■■□□ 2.39
LSM4-202ENST00000593564 ELP3Q9H9T3 547 aa29.97■■■□□ 2.39
LSM4-202ENST00000593564 OTOFQ9HC10 1997 aa29.96■■■□□ 2.39
LSM4-202ENST00000593564 RFX5P48382 616 aaPredicted RBP29.96■■■□□ 2.39
LSM4-202ENST00000593564 OPTNQ96CV9 577 aa29.96■■■□□ 2.39
LSM4-202ENST00000593564 SMC4Q9NTJ3 1288 aa29.96■■■□□ 2.39
LSM4-202ENST00000593564 SUGT1Q9Y2Z0 365 aa29.96■■■□□ 2.39
LSM4-202ENST00000593564 EYA2O00167 538 aa29.95■■■□□ 2.39
LSM4-202ENST00000593564 PPP1R3FQ6ZSY5 799 aaPredicted RBP29.95■■■□□ 2.39
LSM4-202ENST00000593564 CDCA7LQ96GN5 454 aa29.95■■■□□ 2.39
LSM4-202ENST00000593564 ZDHHC15Q96MV8 337 aa29.95■■■□□ 2.39
LSM4-202ENST00000593564 MAST3O60307 1309 aa29.95■■■□□ 2.38
LSM4-202ENST00000593564 SLC34A2O95436 690 aa29.94■■■□□ 2.38
LSM4-202ENST00000593564 DDX55Q8NHQ9 600 aaKnown RBP eCLIP29.94■■■□□ 2.38
LSM4-202ENST00000593564 PTPN18Q99952 460 aa29.94■■■□□ 2.38
LSM4-202ENST00000593564 CRHR2Q13324 411 aa29.93■■■□□ 2.38
LSM4-202ENST00000593564 TRMT2AQ8IZ69 625 aaKnown RBP29.93■■■□□ 2.38
LSM4-202ENST00000593564 MS4A4AQ96JQ5 239 aa29.93■■■□□ 2.38
LSM4-202ENST00000593564 TRIM17Q9Y577 477 aa29.93■■■□□ 2.38
LSM4-202ENST00000593564 SLC5A1P13866 664 aa29.92■■■□□ 2.38
LSM4-202ENST00000593564 MAP3K9P80192 1104 aa29.92■■■□□ 2.38
LSM4-202ENST00000593564 VGLL4Q14135 290 aa29.92■■■□□ 2.38
LSM4-202ENST00000593564 LPIN2Q92539 896 aa29.92■■■□□ 2.38
LSM4-202ENST00000593564 TMOD2Q9NZR1 351 aa29.92■■■□□ 2.38
LSM4-202ENST00000593564 HTTP42858 3142 aa29.91■■■□□ 2.38
LSM4-202ENST00000593564 CT47B1P0C2W7 299 aaPredicted RBP29.91■■■□□ 2.38
LSM4-202ENST00000593564 CACNB3P54284 484 aa29.91■■■□□ 2.38
LSM4-202ENST00000593564 FKBP1CQ5VVH2 108 aa29.91■■■□□ 2.38
LSM4-202ENST00000593564 APOBEC3HQ6NTF7 200 aaKnown RBP29.91■■■□□ 2.38
LSM4-202ENST00000593564 OTOP1Q7RTM1 612 aa29.91■■■□□ 2.38
LSM4-202ENST00000593564 ERO1AQ96HE7 468 aa29.91■■■□□ 2.38
LSM4-202ENST00000593564 HHIPL2Q6UWX4 724 aa29.9■■■□□ 2.38
LSM4-202ENST00000593564 ATG9AQ7Z3C6 839 aa29.9■■■□□ 2.38
LSM4-202ENST00000593564 FAM83AQ86UY5 434 aa29.9■■■□□ 2.38
LSM4-202ENST00000593564 CSADQ9Y600 493 aa29.9■■■□□ 2.38
LSM4-202ENST00000593564 UBTFL1P0CB47 393 aaPredicted RBP29.89■■■□□ 2.38
LSM4-202ENST00000593564 CNKSR2Q8WXI2 1034 aa29.89■■■□□ 2.38
LSM4-202ENST00000593564 FBXO3Q9UK99 471 aa29.89■■■□□ 2.38
LSM4-202ENST00000593564 GTF2A2P52657 109 aa29.88■■■□□ 2.37
LSM4-202ENST00000593564 WDR66Q8TBY9 1149 aa29.88■■■□□ 2.37
LSM4-202ENST00000593564 BRI3BPQ8WY22 251 aa29.88■■■□□ 2.37
LSM4-202ENST00000593564 CIAO1O76071 339 aa29.87■■■□□ 2.37
LSM4-202ENST00000593564 HOOK2Q96ED9 719 aa29.87■■■□□ 2.37
LSM4-202ENST00000593564 CD99L2Q8TCZ2 262 aa29.86■■■□□ 2.37
LSM4-202ENST00000593564 NOB1Q9ULX3 412 aaKnown RBP29.86■■■□□ 2.37
LSM4-202ENST00000593564 RPAP1Q9BWH6 1393 aaPredicted RBP29.86■■■□□ 2.37
LSM4-202ENST00000593564 CCL15-CCL14A0A0B4J2E2 113 aa29.85■■■□□ 2.37
LSM4-202ENST00000593564 SPDYE5A6NIY4 337 aa29.85■■■□□ 2.37
LSM4-202ENST00000593564 SP3Q02447 781 aa29.85■■■□□ 2.37
LSM4-202ENST00000593564 CCL15Q16663 113 aa29.85■■■□□ 2.37
LSM4-202ENST00000593564 OTUD5Q96G74 571 aa29.85■■■□□ 2.37
LSM4-202ENST00000593564 WRNIP1Q96S55 665 aa29.84■■■□□ 2.37
LSM4-202ENST00000593564 API5Q9BZZ5 524 aaKnown RBP29.84■■■□□ 2.37
LSM4-202ENST00000593564 SIL1Q9H173 461 aa29.84■■■□□ 2.37
LSM4-202ENST00000593564 SNCAIPQ9Y6H5 919 aa29.84■■■□□ 2.37
LSM4-202ENST00000593564 ATP2B3Q16720 1220 aa29.83■■■□□ 2.37
LSM4-202ENST00000593564 EFCC1Q9HA90 598 aa29.83■■■□□ 2.37
LSM4-202ENST00000593564 CEP126Q9P2H0 1117 aa29.83■■■□□ 2.37
LSM4-202ENST00000593564 HDAC5Q9UQL6 1122 aa29.83■■■□□ 2.37
LSM4-202ENST00000593564 PTPN22Q9Y2R2 807 aa29.83■■■□□ 2.37
LSM4-202ENST00000593564 INTS3Q68E01 1043 aaKnown RBP29.82■■■□□ 2.36
LSM4-202ENST00000593564 ERO1BQ86YB8 467 aa29.82■■■□□ 2.36
LSM4-202ENST00000593564 TAF1CQ15572 869 aaPredicted RBP29.81■■■□□ 2.36
LSM4-202ENST00000593564 PRPF38BQ5VTL8 546 aaKnown RBP29.81■■■□□ 2.36
LSM4-202ENST00000593564 DCAF15Q66K64 600 aa29.81■■■□□ 2.36
LSM4-202ENST00000593564 ZFYVE28Q9HCC9 887 aa29.81■■■□□ 2.36
LSM4-202ENST00000593564 GNL3LQ9NVN8 582 aaKnown RBP29.81■■■□□ 2.36
LSM4-202ENST00000593564 IL15P40933 162 aaPredicted RBP29.8■■■□□ 2.36
LSM4-202ENST00000593564 FAM43AQ8N2R8 423 aa29.8■■■□□ 2.36
LSM4-202ENST00000593564 ZKSCAN4Q969J2 545 aaPredicted RBP29.8■■■□□ 2.36
LSM4-202ENST00000593564 DAGLAQ9Y4D2 1042 aa29.8■■■□□ 2.36
LSM4-202ENST00000593564 LRRFIP2Q9Y608 721 aaKnown RBP29.8■■■□□ 2.36
LSM4-202ENST00000593564 MYH13Q9UKX3 1938 aa29.8■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 135.6 ms