RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 DBNLQ9UJU6 430 aaKnown RBP14.61□□□□□ -0.07
LIG3-213ENST00000590630 ADM5C9JUS6 153 aa14.6□□□□□ -0.07
LIG3-213ENST00000590630 LDHBP07195 334 aaKnown RBP14.6□□□□□ -0.07
LIG3-213ENST00000590630 CRKP46108 304 aa14.6□□□□□ -0.07
LIG3-213ENST00000590630 HTRA3P83110 453 aa14.6□□□□□ -0.07
LIG3-213ENST00000590630 FMR1Q06787 632 aaKnown RBP eCLIP14.6□□□□□ -0.07
LIG3-213ENST00000590630 TTC39AQ5SRH9 613 aa14.6□□□□□ -0.07
LIG3-213ENST00000590630 CST9Q5W186 159 aa14.6□□□□□ -0.07
LIG3-213ENST00000590630 AACSQ86V21 672 aa14.6□□□□□ -0.07
LIG3-213ENST00000590630 CLASRPQ8N2M8 674 aaKnown RBP14.6□□□□□ -0.07
LIG3-213ENST00000590630 SPATA5Q8NB90 893 aa14.6□□□□□ -0.07
LIG3-213ENST00000590630 ZNF512BQ96KM6 892 aaPredicted RBP14.6□□□□□ -0.07
LIG3-213ENST00000590630 PRMT6Q96LA8 375 aaPredicted RBP14.6□□□□□ -0.07
LIG3-213ENST00000590630 SUPT16HQ9Y5B9 1047 aaKnown RBP14.6□□□□□ -0.07
LIG3-213ENST00000590630 APBB1O00213 710 aa14.59□□□□□ -0.07
LIG3-213ENST00000590630 CELF2O95319 508 aaKnown RBP14.59□□□□□ -0.07
LIG3-213ENST00000590630 PRDX5P30044 214 aa14.59□□□□□ -0.07
LIG3-213ENST00000590630 MCAMP43121 646 aa14.59□□□□□ -0.07
LIG3-213ENST00000590630 SPTY2D1Q68D10 685 aaPredicted RBP14.59□□□□□ -0.07
LIG3-213ENST00000590630 HHIPL2Q6UWX4 724 aa14.59□□□□□ -0.07
LIG3-213ENST00000590630 ZDHHC15Q96MV8 337 aa14.59□□□□□ -0.07
LIG3-213ENST00000590630 CCDC8Q9H0W5 538 aaPredicted RBP14.59□□□□□ -0.07
LIG3-213ENST00000590630 IL1RAPL2Q9NP60 686 aa14.59□□□□□ -0.07
LIG3-213ENST00000590630 TLR7Q9NYK1 1049 aaKnown RBP14.59□□□□□ -0.07
LIG3-213ENST00000590630 HMG20BQ9P0W2 317 aa14.59□□□□□ -0.07
LIG3-213ENST00000590630 PCDHB15Q9Y5E8 787 aa14.59□□□□□ -0.07
LIG3-213ENST00000590630 PCDHAC2Q9Y5I4 1007 aa14.59□□□□□ -0.07
LIG3-213ENST00000590630 DNAJC5GQ8N7S2 189 aa14.58□□□□□ -0.08
LIG3-213ENST00000590630 CDCA5Q96FF9 252 aa14.58□□□□□ -0.08
LIG3-213ENST00000590630 LRRCC1Q9C099 1032 aa14.58□□□□□ -0.08
LIG3-213ENST00000590630 DCTPP1Q9H773 170 aa14.58□□□□□ -0.08
LIG3-213ENST00000590630 ZNF408Q9H9D4 720 aa14.58□□□□□ -0.08
LIG3-213ENST00000590630 ABCF2Q9UG63 623 aa14.58□□□□□ -0.08
LIG3-213ENST00000590630 MAST2Q6P0Q8 1798 aa14.57□□□□□ -0.08
LIG3-213ENST00000590630 MYO5AQ9Y4I1 1855 aaKnown RBP14.57□□□□□ -0.08
LIG3-213ENST00000590630 SPDYE2Q495Y8 402 aa14.57□□□□□ -0.08
LIG3-213ENST00000590630 PI16Q6UXB8 463 aa14.57□□□□□ -0.08
LIG3-213ENST00000590630 DZIP1Q86YF9 867 aaKnown RBP14.57□□□□□ -0.08
LIG3-213ENST00000590630 ABT1Q9ULW3 272 aaKnown RBP14.57□□□□□ -0.08
LIG3-213ENST00000590630 PPP2R3BQ9Y5P8 575 aa14.57□□□□□ -0.08
LIG3-213ENST00000590630 PAPPA2Q9BXP8 1791 aa14.56□□□□□ -0.08
LIG3-213ENST00000590630 CLRN2A0PK11 232 aa14.56□□□□□ -0.08
LIG3-213ENST00000590630 IFIT2P09913 472 aaKnown RBP14.56□□□□□ -0.08
LIG3-213ENST00000590630 TNFAIP1Q13829 316 aa14.56□□□□□ -0.08
LIG3-213ENST00000590630 DLK2Q6UY11 383 aa14.56□□□□□ -0.08
LIG3-213ENST00000590630 ERICH6Q7L0X2 663 aa14.56□□□□□ -0.08
LIG3-213ENST00000590630 SLF2Q8IX21 1173 aa14.56□□□□□ -0.08
LIG3-213ENST00000590630 KLRG1Q96E93 195 aa14.56□□□□□ -0.08
LIG3-213ENST00000590630 DEFB129Q9H1M3 183 aa14.56□□□□□ -0.08
LIG3-213ENST00000590630 TDRD3Q9H7E2 651 aaKnown RBP14.56□□□□□ -0.08
LIG3-213ENST00000590630 VEZTQ9HBM0 779 aa14.56□□□□□ -0.08
LIG3-213ENST00000590630 ZNF70Q9UC06 446 aaPredicted RBP14.56□□□□□ -0.08
LIG3-213ENST00000590630 SCAF8Q9UPN6 1271 aaKnown RBP14.56□□□□□ -0.08
LIG3-213ENST00000590630 CNTNAP1P78357 1384 aa14.56□□□□□ -0.08
LIG3-213ENST00000590630 DOCK2Q92608 1830 aa14.55□□□□□ -0.08
LIG3-213ENST00000590630 RASSF10A6NK89 507 aa14.55□□□□□ -0.08
LIG3-213ENST00000590630 IGSF3O75054 1194 aa14.55□□□□□ -0.08
LIG3-213ENST00000590630 DIXDC1Q155Q3 683 aa14.55□□□□□ -0.08
LIG3-213ENST00000590630 APOBEC3HQ6NTF7 200 aaKnown RBP14.55□□□□□ -0.08
LIG3-213ENST00000590630 SAPCD2Q86UD0 394 aa14.55□□□□□ -0.08
LIG3-213ENST00000590630 DAGLAQ9Y4D2 1042 aa14.55□□□□□ -0.08
LIG3-213ENST00000590630 TLL2Q9Y6L7 1015 aa14.55□□□□□ -0.08
LIG3-213ENST00000590630 AOX1Q06278 1338 aa14.55□□□□□ -0.08
LIG3-213ENST00000590630 NF2P35240 595 aa14.54□□□□□ -0.08
LIG3-213ENST00000590630 FKBP1BP68106 108 aa14.54□□□□□ -0.08
LIG3-213ENST00000590630 HDAC1Q13547 482 aaPredicted RBP14.54□□□□□ -0.08
LIG3-213ENST00000590630 FKBP1CQ5VVH2 108 aa14.54□□□□□ -0.08
LIG3-213ENST00000590630 TBC1D9Q6ZT07 1266 aa14.54□□□□□ -0.08
LIG3-213ENST00000590630 C2orf69Q8N8R5 385 aa14.54□□□□□ -0.08
LIG3-213ENST00000590630 FAM163AQ96GL9 167 aaPredicted RBP14.54□□□□□ -0.08
LIG3-213ENST00000590630 HHIPL1Q96JK4 782 aa14.54□□□□□ -0.08
LIG3-213ENST00000590630 GBA2Q9HCG7 927 aaPredicted RBP14.54□□□□□ -0.08
LIG3-213ENST00000590630 SNRKQ9NRH2 765 aa14.54□□□□□ -0.08
LIG3-213ENST00000590630 TMOD2Q9NZR1 351 aa14.54□□□□□ -0.08
LIG3-213ENST00000590630 LRP2BPQ9P2M1 347 aa14.54□□□□□ -0.08
LIG3-213ENST00000590630 GAKO14976 1311 aa14.54□□□□□ -0.08
LIG3-213ENST00000590630 ZAP70P43403 619 aa14.53□□□□□ -0.08
LIG3-213ENST00000590630 TNNI2P48788 182 aa14.53□□□□□ -0.08
LIG3-213ENST00000590630 GSTO1P78417 241 aa14.53□□□□□ -0.08
LIG3-213ENST00000590630 MECOMQ03112 1051 aa14.53□□□□□ -0.08
LIG3-213ENST00000590630 DEFB115Q30KQ5 88 aa14.53□□□□□ -0.08
LIG3-213ENST00000590630 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.53□□□□□ -0.08
LIG3-213ENST00000590630 RAI14Q9P0K7 980 aa14.53□□□□□ -0.08
LIG3-213ENST00000590630 MKRN1Q9UHC7 482 aaKnown RBP14.53□□□□□ -0.08
LIG3-213ENST00000590630 AK9Q5TCS8 1911 aa14.53□□□□□ -0.08
LIG3-213ENST00000590630 MROH7-TTC4A0A0A0MT08 1334 aa14.52□□□□□ -0.08
LIG3-213ENST00000590630 CYP2E1P05181 493 aaPredicted RBP14.52□□□□□ -0.09
LIG3-213ENST00000590630 RASA3Q14644 834 aa14.52□□□□□ -0.09
LIG3-213ENST00000590630 PRAMEF18Q5VWM3 479 aa14.52□□□□□ -0.09
LIG3-213ENST00000590630 EXOC6Q8TAG9 804 aa14.52□□□□□ -0.09
LIG3-213ENST00000590630 NSUN4Q96CB9 384 aaKnown RBP14.52□□□□□ -0.09
LIG3-213ENST00000590630 BCL11AQ9H165 835 aa14.52□□□□□ -0.09
LIG3-213ENST00000590630 TCP10L2B9ZVM9 353 aa14.51□□□□□ -0.09
LIG3-213ENST00000590630 SMARCA5O60264 1052 aaPredicted RBP14.51□□□□□ -0.09
LIG3-213ENST00000590630 LDHCP07864 332 aa14.51□□□□□ -0.09
LIG3-213ENST00000590630 ECE1P42892 770 aa14.51□□□□□ -0.09
LIG3-213ENST00000590630 HUNKP57058 714 aa14.51□□□□□ -0.09
LIG3-213ENST00000590630 SUPT20HL1Q3ZLR7 823 aa14.51□□□□□ -0.09
LIG3-213ENST00000590630 CDC42EP5Q6NZY7 148 aa14.51□□□□□ -0.09
LIG3-213ENST00000590630 TMED8Q6PL24 325 aaPredicted RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms