RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 DNAJA1P31689 397 aaKnown RBP7.79□□□□□ -1.16
SMAD4-208ENST00000589706 PGBD3Q8N328 593 aa7.79□□□□□ -1.16
SMAD4-208ENST00000589706 ZCCHC2Q9C0B9 1178 aaKnown RBP7.79□□□□□ -1.16
SMAD4-208ENST00000589706 MAST1Q9Y2H9 1570 aa7.79□□□□□ -1.16
SMAD4-208ENST00000589706 NHSL1Q5SYE7 1610 aa7.78□□□□□ -1.16
SMAD4-208ENST00000589706 CHD2O14647 1828 aaKnown RBP7.78□□□□□ -1.16
SMAD4-208ENST00000589706 SENP3-EIF4A1A0A087X0R7 540 aa7.78□□□□□ -1.16
SMAD4-208ENST00000589706 GRM2Q14416 872 aa7.78□□□□□ -1.16
SMAD4-208ENST00000589706 DHX38Q92620 1227 aaKnown RBP7.78□□□□□ -1.16
SMAD4-208ENST00000589706 GAS2L1Q99501 681 aaPredicted RBP7.78□□□□□ -1.16
SMAD4-208ENST00000589706 PPP4R2Q9NY27 417 aa7.78□□□□□ -1.16
SMAD4-208ENST00000589706 PNPLA6Q8IY17 1366 aa7.78□□□□□ -1.16
SMAD4-208ENST00000589706 CAMSAP2Q08AD1 1489 aa7.78□□□□□ -1.16
SMAD4-208ENST00000589706 GSTT1P30711 240 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 GTF2F1P35269 517 aaKnown RBP eCLIP7.77□□□□□ -1.17
SMAD4-208ENST00000589706 VEGFBP49765 207 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 KCNQ4P56696 695 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 ARID5AQ03989 594 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 IDI1Q13907 227 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 KIAA0319Q5VV43 1072 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 DPH6Q7L8W6 267 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 VPS37DQ86XT2 251 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 ARMC5Q96C12 935 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 KCNH4Q9UQ05 1017 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 EFCAB6Q5THR3 1501 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 ATRNO75882 1429 aa7.77□□□□□ -1.17
SMAD4-208ENST00000589706 CEP152O94986 1710 aa7.76□□□□□ -1.17
SMAD4-208ENST00000589706 POTECB2RU33 542 aa7.76□□□□□ -1.17
SMAD4-208ENST00000589706 SASH3O75995 380 aa7.76□□□□□ -1.17
SMAD4-208ENST00000589706 AVPP01185 164 aa7.76□□□□□ -1.17
SMAD4-208ENST00000589706 BMP1P13497 986 aa7.76□□□□□ -1.17
SMAD4-208ENST00000589706 EFHC2Q5JST6 749 aa7.76□□□□□ -1.17
SMAD4-208ENST00000589706 ERMP1Q7Z2K6 904 aa7.76□□□□□ -1.17
SMAD4-208ENST00000589706 TRIM46Q7Z4K8 759 aa7.76□□□□□ -1.17
SMAD4-208ENST00000589706 DDX17Q92841 729 aaKnown RBP7.76□□□□□ -1.17
SMAD4-208ENST00000589706 DNAJC2Q99543 621 aaKnown RBP7.76□□□□□ -1.17
SMAD4-208ENST00000589706 EHD4Q9H223 541 aa7.76□□□□□ -1.17
SMAD4-208ENST00000589706 TRAK1Q9UPV9 953 aa7.76□□□□□ -1.17
SMAD4-208ENST00000589706 MROH1Q8NDA8 1641 aa7.76□□□□□ -1.17
SMAD4-208ENST00000589706 CCDC141Q6ZP82 1450 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 BCL9LQ86UU0 1499 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 ASXL1Q8IXJ9 1541 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 A0A1W2PP55 124 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 FAM187AA6NFU0 413 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 SMARCA5O60264 1052 aaPredicted RBP7.75□□□□□ -1.17
SMAD4-208ENST00000589706 CYP2E1P05181 493 aaPredicted RBP7.75□□□□□ -1.17
SMAD4-208ENST00000589706 TSPY4P0CV99 314 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 TSPY10P0CW01 314 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 EDN3P14138 238 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 CCINQ13939 588 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 GLIS3Q8NEA6 775 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 NOC4LQ9BVI4 516 aaKnown RBP7.75□□□□□ -1.17
SMAD4-208ENST00000589706 COPRSQ9NQ92 184 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 CUEDC1Q9NWM3 386 aaPredicted RBP7.75□□□□□ -1.17
SMAD4-208ENST00000589706 TTF2Q9UNY4 1162 aaKnown RBP7.75□□□□□ -1.17
SMAD4-208ENST00000589706 PDZRN3Q9UPQ7 1066 aa7.75□□□□□ -1.17
SMAD4-208ENST00000589706 PHF20L1A8MW92 1017 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 MMP20O60882 483 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 FAM157BP0CG42 384 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 TARSP26639 723 aaKnown RBP7.74□□□□□ -1.17
SMAD4-208ENST00000589706 SFSWAPQ12872 951 aaKnown RBP7.74□□□□□ -1.17
SMAD4-208ENST00000589706 LBRQ14739 615 aaKnown RBP7.74□□□□□ -1.17
SMAD4-208ENST00000589706 KRT25Q7Z3Z0 450 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 CCDC136Q96JN2 1154 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 SPATA32Q96LK8 384 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 ZFP42Q96MM3 310 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 GSX2Q9BZM3 304 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 LNPKQ9C0E8 428 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 LATS2Q9NRM7 1088 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 KANSL3Q9P2N6 904 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 DNMT3LQ9UJW3 386 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.74□□□□□ -1.17
SMAD4-208ENST00000589706 ARHGAP31Q2M1Z3 1444 aa7.74□□□□□ -1.17
SMAD4-208ENST00000589706 ATXN7O15265 892 aaPredicted RBP7.73□□□□□ -1.17
SMAD4-208ENST00000589706 EFSO43281 561 aa7.73□□□□□ -1.17
SMAD4-208ENST00000589706 GJA8P48165 433 aa7.73□□□□□ -1.17
SMAD4-208ENST00000589706 PAK2Q13177 524 aa7.73□□□□□ -1.17
SMAD4-208ENST00000589706 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.73□□□□□ -1.17
SMAD4-208ENST00000589706 PEAR1Q5VY43 1037 aaPredicted RBP7.73□□□□□ -1.17
SMAD4-208ENST00000589706 FIGNL1Q6PIW4 674 aa7.73□□□□□ -1.17
SMAD4-208ENST00000589706 C3orf58Q8NDZ4 430 aa7.73□□□□□ -1.17
SMAD4-208ENST00000589706 OR13H1Q8NG92 308 aa7.73□□□□□ -1.17
SMAD4-208ENST00000589706 PUS7Q96PZ0 661 aaKnown RBP7.73□□□□□ -1.17
SMAD4-208ENST00000589706 RSRP1Q9BUV0 290 aa7.73□□□□□ -1.17
SMAD4-208ENST00000589706 KBTBD4Q9NVX7 518 aa7.73□□□□□ -1.17
SMAD4-208ENST00000589706 SALL4Q9UJQ4 1053 aa7.73□□□□□ -1.17
SMAD4-208ENST00000589706 TBX22Q9Y458 520 aa7.73□□□□□ -1.17
SMAD4-208ENST00000589706 C11orf95C9JLR9 678 aaPredicted RBP7.72□□□□□ -1.17
SMAD4-208ENST00000589706 RARAP10276 462 aa7.72□□□□□ -1.17
SMAD4-208ENST00000589706 CANXP27824 592 aaKnown RBP7.72□□□□□ -1.17
SMAD4-208ENST00000589706 SMCPP49901 116 aaPredicted RBP7.72□□□□□ -1.17
SMAD4-208ENST00000589706 FCGRTP55899 365 aa7.72□□□□□ -1.17
SMAD4-208ENST00000589706 RBL2Q08999 1139 aa7.72□□□□□ -1.17
SMAD4-208ENST00000589706 R3HDM1Q15032 1099 aaKnown RBP7.72□□□□□ -1.17
SMAD4-208ENST00000589706 PRPF40BQ6NWY9 871 aaKnown RBP7.72□□□□□ -1.17
SMAD4-208ENST00000589706 PCDHGC4Q9Y5F7 938 aa7.72□□□□□ -1.17
SMAD4-208ENST00000589706 FYCO1Q9BQS8 1478 aa7.72□□□□□ -1.17
SMAD4-208ENST00000589706 MTUS2Q5JR59 1369 aa7.71□□□□□ -1.17
SMAD4-208ENST00000589706 PLEKHG1Q9ULL1 1385 aa7.71□□□□□ -1.17
SMAD4-208ENST00000589706 PTCH1Q13635 1447 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms