RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 HOMER1Q86YM7 354 aa10.77□□□□□ -0.69
VMP1-208ENST00000588617 EFCC1Q9HA90 598 aa10.77□□□□□ -0.69
VMP1-208ENST00000588617 MARK1Q9P0L2 795 aa10.77□□□□□ -0.69
VMP1-208ENST00000588617 ESYT3A0FGR9 886 aa10.76□□□□□ -0.69
VMP1-208ENST00000588617 PDPK1O15530 556 aa10.76□□□□□ -0.69
VMP1-208ENST00000588617 PPP2R3AQ06190 1150 aa10.76□□□□□ -0.69
VMP1-208ENST00000588617 GK5Q6ZS86 529 aa10.76□□□□□ -0.69
VMP1-208ENST00000588617 OR6P1Q8NGX9 317 aa10.76□□□□□ -0.69
VMP1-208ENST00000588617 PLD4Q96BZ4 506 aa10.76□□□□□ -0.69
VMP1-208ENST00000588617 BRMS1Q9HCU9 246 aa10.76□□□□□ -0.69
VMP1-208ENST00000588617 FAM221AA4D161 298 aa10.75□□□□□ -0.69
VMP1-208ENST00000588617 BMP1P13497 986 aa10.75□□□□□ -0.69
VMP1-208ENST00000588617 RAB44Q7Z6P3 723 aaPredicted RBP10.75□□□□□ -0.69
VMP1-208ENST00000588617 SLC30A3Q99726 388 aa10.75□□□□□ -0.69
VMP1-208ENST00000588617 MAPK8IP1Q9UQF2 711 aa10.75□□□□□ -0.69
VMP1-208ENST00000588617 NRLP54845 237 aa10.74□□□□□ -0.69
VMP1-208ENST00000588617 RASGRF1Q13972 1273 aa10.74□□□□□ -0.69
VMP1-208ENST00000588617 SEPT6Q14141 434 aa10.74□□□□□ -0.69
VMP1-208ENST00000588617 LARP1BQ659C4 914 aaKnown RBP10.74□□□□□ -0.69
VMP1-208ENST00000588617 PBX4Q9BYU1 374 aa10.74□□□□□ -0.69
VMP1-208ENST00000588617 RASSF4Q9H2L5 321 aa10.74□□□□□ -0.69
VMP1-208ENST00000588617 KLHL42Q9P2K6 505 aa10.74□□□□□ -0.69
VMP1-208ENST00000588617 GMPR2Q9P2T1 348 aaKnown RBP10.74□□□□□ -0.69
VMP1-208ENST00000588617 DNMT3LQ9UJW3 386 aa10.74□□□□□ -0.69
VMP1-208ENST00000588617 LOC102724428A0A0B4J2F2 783 aa10.73□□□□□ -0.69
VMP1-208ENST00000588617 J3QW42 95 aa10.73□□□□□ -0.69
VMP1-208ENST00000588617 BPNT1O95861 308 aa10.73□□□□□ -0.69
VMP1-208ENST00000588617 THBS1P07996 1170 aa10.73□□□□□ -0.69
VMP1-208ENST00000588617 BMP6P22004 513 aa10.73□□□□□ -0.69
VMP1-208ENST00000588617 SIK1P57059 783 aa10.73□□□□□ -0.69
VMP1-208ENST00000588617 FXNQ16595 210 aa10.73□□□□□ -0.69
VMP1-208ENST00000588617 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.73□□□□□ -0.69
VMP1-208ENST00000588617 REXO1Q8N1G1 1221 aaKnown RBP10.73□□□□□ -0.69
VMP1-208ENST00000588617 MUC3BQ9H195 1237 aa10.73□□□□□ -0.69
VMP1-208ENST00000588617 NUCKS1Q9H1E3 243 aaKnown RBP10.73□□□□□ -0.69
VMP1-208ENST00000588617 CYP8B1Q9UNU6 501 aa10.73□□□□□ -0.69
VMP1-208ENST00000588617 SENP3-EIF4A1A0A087X0R7 540 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 CILPO75339 1184 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 IMPDH2P12268 514 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 GYS2P54840 703 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 MLLT1Q03111 559 aaPredicted RBP10.72□□□□□ -0.69
VMP1-208ENST00000588617 CLCQ05315 142 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 PPP2R5EQ16537 467 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 ARSHQ5FYA8 562 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 RASIP1Q5U651 963 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 KANK3Q6NY19 840 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 HFE2Q6ZVN8 426 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 REC114Q7Z4M0 266 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 TNKS2Q9H2K2 1166 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 TMX1Q9H3N1 280 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 ZNRF3Q9ULT6 936 aa10.72□□□□□ -0.69
VMP1-208ENST00000588617 BNIP3LO60238 219 aa10.71□□□□□ -0.69
VMP1-208ENST00000588617 NME2P22392 152 aa10.71□□□□□ -0.69
VMP1-208ENST00000588617 ATP11AP98196 1134 aa10.71□□□□□ -0.69
VMP1-208ENST00000588617 LRRC14Q15048 493 aa10.71□□□□□ -0.69
VMP1-208ENST00000588617 TRIM46Q7Z4K8 759 aa10.71□□□□□ -0.69
VMP1-208ENST00000588617 ZFP42Q96MM3 310 aa10.71□□□□□ -0.69
VMP1-208ENST00000588617 CLEC4MQ9H2X3 399 aaPredicted RBP10.71□□□□□ -0.69
VMP1-208ENST00000588617 CBX8Q9HC52 389 aa10.71□□□□□ -0.69
VMP1-208ENST00000588617 CD33P20138 364 aa10.7□□□□□ -0.7
VMP1-208ENST00000588617 NEUROD1Q13562 356 aa10.7□□□□□ -0.7
VMP1-208ENST00000588617 UBAP2LQ14157 1087 aaKnown RBP10.7□□□□□ -0.7
VMP1-208ENST00000588617 MTERF2Q49AM1 385 aa10.7□□□□□ -0.7
VMP1-208ENST00000588617 TAF7LQ5H9L4 462 aa10.7□□□□□ -0.7
VMP1-208ENST00000588617 KIAA0907Q7Z7F0 614 aaPredicted RBP10.7□□□□□ -0.7
VMP1-208ENST00000588617 LSRQ86X29 649 aaPredicted RBP10.7□□□□□ -0.7
VMP1-208ENST00000588617 POP1Q99575 1024 aaKnown RBP10.7□□□□□ -0.7
VMP1-208ENST00000588617 IGFLR1Q9H665 355 aa10.7□□□□□ -0.7
VMP1-208ENST00000588617 ATP13A2Q9NQ11 1180 aa10.7□□□□□ -0.7
VMP1-208ENST00000588617 TMEM260Q9NX78 707 aa10.7□□□□□ -0.7
VMP1-208ENST00000588617 HCN2Q9UL51 889 aa10.7□□□□□ -0.7
VMP1-208ENST00000588617 ZBTB42B2RXF5 422 aa10.69□□□□□ -0.7
VMP1-208ENST00000588617 H7C1W4 665 aa10.69□□□□□ -0.7
VMP1-208ENST00000588617 GHRHP01286 108 aa10.69□□□□□ -0.7
VMP1-208ENST00000588617 GPLD1P80108 840 aa10.69□□□□□ -0.7
VMP1-208ENST00000588617 SQSTM1Q13501 440 aa10.69□□□□□ -0.7
VMP1-208ENST00000588617 C16orf86Q6ZW13 317 aa10.69□□□□□ -0.7
VMP1-208ENST00000588617 SULF2Q8IWU5 870 aa10.69□□□□□ -0.7
VMP1-208ENST00000588617 BSNDQ8WZ55 320 aa10.69□□□□□ -0.7
VMP1-208ENST00000588617 RBSNQ9H1K0 784 aa10.69□□□□□ -0.7
VMP1-208ENST00000588617 LEMD3Q9Y2U8 911 aa10.69□□□□□ -0.7
VMP1-208ENST00000588617 DDAH1O94760 285 aa10.68□□□□□ -0.7
VMP1-208ENST00000588617 CASP7P55210 303 aa10.68□□□□□ -0.7
VMP1-208ENST00000588617 PCDH1Q08174 1060 aa10.68□□□□□ -0.7
VMP1-208ENST00000588617 LLGL2Q6P1M3 1020 aa10.68□□□□□ -0.7
VMP1-208ENST00000588617 RBBP8NLQ8NC74 664 aaPredicted RBP10.68□□□□□ -0.7
VMP1-208ENST00000588617 GRIN3AQ8TCU5 1115 aa10.68□□□□□ -0.7
VMP1-208ENST00000588617 ABHD17AQ96GS6 310 aa10.68□□□□□ -0.7
VMP1-208ENST00000588617 ARID4BQ4LE39 1312 aaPredicted RBP10.67□□□□□ -0.7
VMP1-208ENST00000588617 MAN1A2O60476 641 aa10.67□□□□□ -0.7
VMP1-208ENST00000588617 GJB6O95452 261 aa10.67□□□□□ -0.7
VMP1-208ENST00000588617 ARNTP27540 789 aa10.67□□□□□ -0.7
VMP1-208ENST00000588617 CEP135Q66GS9 1140 aa10.67□□□□□ -0.7
VMP1-208ENST00000588617 RPUSD2Q8IZ73 545 aaKnown RBP10.67□□□□□ -0.7
VMP1-208ENST00000588617 NDFIP2Q9NV92 336 aa10.67□□□□□ -0.7
VMP1-208ENST00000588617 PCDHB14Q9Y5E9 798 aa10.67□□□□□ -0.7
VMP1-208ENST00000588617 KDM2BQ8NHM5 1336 aa10.66□□□□□ -0.7
VMP1-208ENST00000588617 C11orf95C9JLR9 678 aaPredicted RBP10.66□□□□□ -0.7
VMP1-208ENST00000588617 SMNDC1O75940 238 aaKnown RBP eCLIP10.66□□□□□ -0.7
VMP1-208ENST00000588617 AMPD3Q01432 767 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms