RNA–Protein interactions for RNA: ENST00000588534.1

ZNF554-202, Transcript of zinc finger protein 554, humanhuman

TSL 2

Gene ZNF554, Length 4,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF554-202ENST00000588534 VPS53Q5VIR6 699 aa8.76□□□□□ -1.01
ZNF554-202ENST00000588534 CCDC47Q96A33 483 aaKnown RBP8.76□□□□□ -1.01
ZNF554-202ENST00000588534 UPF3BQ9BZI7 483 aaKnown RBP8.76□□□□□ -1.01
ZNF554-202ENST00000588534 RTL9Q8NET4 1388 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 TSPY3P0CV98 308 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 TSPY8P0CW00 308 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 TPM4P67936 248 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 DLGAP5Q15398 846 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 MTFR1LQ9H019 292 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 SH2D4AQ9H788 454 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 ATP8A2Q9NTI2 1148 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 SEC63Q9UGP8 760 aaKnown RBP8.75□□□□□ -1.01
ZNF554-202ENST00000588534 F8W031 263 aaPredicted RBP8.75□□□□□ -1.01
ZNF554-202ENST00000588534 ATF5Q9Y2D1 282 aaPredicted RBP8.75□□□□□ -1.01
ZNF554-202ENST00000588534 ATP6V0A2Q9Y487 856 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 USP54Q70EL1 1684 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 NRDCO43847 1150 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 L1TD1Q5T7N2 865 aaKnown RBP8.75□□□□□ -1.01
ZNF554-202ENST00000588534 SKAP1Q86WV1 359 aa8.75□□□□□ -1.01
ZNF554-202ENST00000588534 GOLGA8AA7E2F4 631 aa8.74□□□□□ -1.01
ZNF554-202ENST00000588534 GOLGA8BA8MQT2 603 aa8.74□□□□□ -1.01
ZNF554-202ENST00000588534 ZMYM1Q5SVZ6 1142 aa8.74□□□□□ -1.01
ZNF554-202ENST00000588534 COL23A1Q86Y22 540 aaPredicted RBP8.74□□□□□ -1.01
ZNF554-202ENST00000588534 CFAP45Q9UL16 551 aa8.74□□□□□ -1.01
ZNF554-202ENST00000588534 GSPT1P15170 499 aaKnown RBP8.74□□□□□ -1.01
ZNF554-202ENST00000588534 MMP14P50281 582 aa8.74□□□□□ -1.01
ZNF554-202ENST00000588534 MIGA1Q8NAN2 632 aa8.74□□□□□ -1.01
ZNF554-202ENST00000588534 TTF2Q9UNY4 1162 aaKnown RBP8.74□□□□□ -1.01
ZNF554-202ENST00000588534 COL16A1Q07092 1604 aaPredicted RBP8.74□□□□□ -1.01
ZNF554-202ENST00000588534 MBD3O95983 291 aa8.74□□□□□ -1.01
ZNF554-202ENST00000588534 TGFB2P61812 414 aa8.74□□□□□ -1.01
ZNF554-202ENST00000588534 CELF1Q92879 486 aaKnown RBP8.74□□□□□ -1.01
ZNF554-202ENST00000588534 ADORA1P30542 326 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 SLC4A3P48751 1232 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 HAND2P61296 217 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 SSRP1Q08945 709 aaKnown RBP8.73□□□□□ -1.01
ZNF554-202ENST00000588534 IFIT1BQ5T764 474 aaKnown RBP8.73□□□□□ -1.01
ZNF554-202ENST00000588534 CCDC73Q6ZRK6 1079 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 PAXIP1Q6ZW49 1069 aaPredicted RBP8.73□□□□□ -1.01
ZNF554-202ENST00000588534 CCAR1Q8IX12 1150 aaKnown RBP8.73□□□□□ -1.01
ZNF554-202ENST00000588534 SLC4A9Q96Q91 983 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 TAOK3Q9H2K8 898 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 USP17L3A6NCW0 530 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 USP17L4A6NCW7 530 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 ZBTB43O43298 467 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 HSPA4P34932 840 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 GPR162Q16538 588 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 RUFY3Q7L099 469 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 USP17L1Q7RTZ2 530 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 PKNOX2Q96KN3 472 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 CEP131Q9UPN4 1083 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 PRC1O43663 620 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 RFX5P48382 616 aaPredicted RBP8.73□□□□□ -1.01
ZNF554-202ENST00000588534 METAP2P50579 478 aaKnown RBP eCLIP8.73□□□□□ -1.01
ZNF554-202ENST00000588534 KRT85P78386 507 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 STK3Q13188 491 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 GIMAP6Q6P9H5 292 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 ARHGAP27Q6ZUM4 889 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 ATG9AQ7Z3C6 839 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 STK11IPQ8N1F8 1099 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 PI4K2BQ8TCG2 481 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 DDX49Q9Y6V7 483 aaKnown RBP8.73□□□□□ -1.01
ZNF554-202ENST00000588534 UBN2Q6ZU65 1347 aa8.73□□□□□ -1.01
ZNF554-202ENST00000588534 ARID4AP29374 1257 aaPredicted RBP8.72□□□□□ -1.01
ZNF554-202ENST00000588534 ADD2P35612 726 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 IARSP41252 1262 aaKnown RBP8.72□□□□□ -1.01
ZNF554-202ENST00000588534 POTEAQ6S8J7 498 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 INTS4Q96HW7 963 aaKnown RBP8.72□□□□□ -1.01
ZNF554-202ENST00000588534 FAM227BQ96M60 508 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 ARMT1Q9H993 441 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 EHMT1Q9H9B1 1298 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 SLC27A2O14975 620 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 ZBTB7AO95365 584 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 TXLNAP40222 546 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 VEZTQ9HBM0 779 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 RBM28Q9NW13 759 aaKnown RBP8.72□□□□□ -1.01
ZNF554-202ENST00000588534 MTMR7Q9Y216 660 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 LRRC37A3O60309 1634 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 CASP7P55210 303 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 PICALMQ13492 652 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 SYNE4Q8N205 404 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 FEZ1Q99689 392 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 VPS33BQ9H267 617 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 CD209Q9NNX6 404 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 GJA3Q9Y6H8 435 aa8.72□□□□□ -1.01
ZNF554-202ENST00000588534 NPM3O75607 178 aaKnown RBP8.71□□□□□ -1.01
ZNF554-202ENST00000588534 BRD2P25440 801 aaKnown RBP8.71□□□□□ -1.01
ZNF554-202ENST00000588534 CCDC83Q8IWF9 413 aa8.71□□□□□ -1.01
ZNF554-202ENST00000588534 BRF1Q92994 677 aa8.71□□□□□ -1.01
ZNF554-202ENST00000588534 STRCP1A6NGW2 1772 aa8.71□□□□□ -1.01
ZNF554-202ENST00000588534 TTLL12Q14166 644 aaPredicted RBP8.71□□□□□ -1.01
ZNF554-202ENST00000588534 CCDC96Q2M329 555 aa8.71□□□□□ -1.01
ZNF554-202ENST00000588534 DEFB132Q7Z7B7 95 aa8.71□□□□□ -1.01
ZNF554-202ENST00000588534 BICD2Q8TD16 824 aa8.71□□□□□ -1.01
ZNF554-202ENST00000588534 C8orf76Q96K31 380 aa8.71□□□□□ -1.01
ZNF554-202ENST00000588534 USP40Q9NVE5 1235 aa8.71□□□□□ -1.01
ZNF554-202ENST00000588534 AATFQ9NY61 560 aaKnown RBP eCLIP8.71□□□□□ -1.01
ZNF554-202ENST00000588534 KLF18A0A0U1RQI7 1052 aa8.71□□□□□ -1.02
ZNF554-202ENST00000588534 LETM1O95202 739 aaPredicted RBP8.71□□□□□ -1.02
ZNF554-202ENST00000588534 R3HDM1Q15032 1099 aaKnown RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms