RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 SH3TC2Q8TF17 1288 aa14.08□□□□□ -0.16
VPS4B-202ENST00000588059 ARHGAP39Q9C0H5 1083 aa14.08□□□□□ -0.16
VPS4B-202ENST00000588059 TMEM39BQ9GZU3 492 aa14.08□□□□□ -0.16
VPS4B-202ENST00000588059 SERPINA10Q9UK55 444 aa14.08□□□□□ -0.16
VPS4B-202ENST00000588059 TTF2Q9UNY4 1162 aaKnown RBP14.08□□□□□ -0.16
VPS4B-202ENST00000588059 SZT2Q5T011 3432 aa14.08□□□□□ -0.16
VPS4B-202ENST00000588059 TCP10L2B9ZVM9 353 aa14.07□□□□□ -0.16
VPS4B-202ENST00000588059 MAP3K9P80192 1104 aa14.07□□□□□ -0.16
VPS4B-202ENST00000588059 DZIP1LQ8IYY4 767 aaKnown RBP14.07□□□□□ -0.16
VPS4B-202ENST00000588059 TDRD7Q8NHU6 1098 aaKnown RBP14.07□□□□□ -0.16
VPS4B-202ENST00000588059 PRKRIP1Q9H875 184 aaPredicted RBP14.07□□□□□ -0.16
VPS4B-202ENST00000588059 CHMP3Q9Y3E7 222 aa14.07□□□□□ -0.16
VPS4B-202ENST00000588059 CSADQ9Y600 493 aa14.07□□□□□ -0.16
VPS4B-202ENST00000588059 SPDYE5A6NIY4 337 aa14.06□□□□□ -0.16
VPS4B-202ENST00000588059 PLIN1O60240 522 aa14.06□□□□□ -0.16
VPS4B-202ENST00000588059 TLR2O60603 784 aa14.06□□□□□ -0.16
VPS4B-202ENST00000588059 LACTBP83111 547 aaPredicted RBP14.06□□□□□ -0.16
VPS4B-202ENST00000588059 SHISA4Q96DD7 197 aa14.06□□□□□ -0.16
VPS4B-202ENST00000588059 ZNF594Q96JF6 807 aaPredicted RBP14.06□□□□□ -0.16
VPS4B-202ENST00000588059 SNCAIPQ9Y6H5 919 aa14.06□□□□□ -0.16
VPS4B-202ENST00000588059 BTBD19C9JJ37 291 aa14.05□□□□□ -0.16
VPS4B-202ENST00000588059 CRKP46108 304 aa14.05□□□□□ -0.16
VPS4B-202ENST00000588059 EPHA10Q5JZY3 1008 aa14.05□□□□□ -0.16
VPS4B-202ENST00000588059 LMBR1LQ6UX01 489 aa14.05□□□□□ -0.16
VPS4B-202ENST00000588059 CHRDL2Q6WN34 429 aa14.05□□□□□ -0.16
VPS4B-202ENST00000588059 ZCCHC17Q9NP64 241 aaKnown RBP14.05□□□□□ -0.16
VPS4B-202ENST00000588059 CETPP11597 493 aa14.04□□□□□ -0.16
VPS4B-202ENST00000588059 GYG1P46976 350 aa14.04□□□□□ -0.16
VPS4B-202ENST00000588059 TNNI2P48788 182 aa14.04□□□□□ -0.16
VPS4B-202ENST00000588059 KIF22Q14807 665 aa14.04□□□□□ -0.16
VPS4B-202ENST00000588059 LDHAL6AQ6ZMR3 332 aa14.04□□□□□ -0.16
VPS4B-202ENST00000588059 CNNM1Q9NRU3 951 aa14.04□□□□□ -0.16
VPS4B-202ENST00000588059 IRF6O14896 467 aa14.03□□□□□ -0.16
VPS4B-202ENST00000588059 WDHD1O75717 1129 aaPredicted RBP14.03□□□□□ -0.16
VPS4B-202ENST00000588059 GNRH1P01148 92 aa14.03□□□□□ -0.16
VPS4B-202ENST00000588059 HIBADHP31937 336 aaKnown RBP14.03□□□□□ -0.16
VPS4B-202ENST00000588059 PRMT2P55345 433 aa14.03□□□□□ -0.16
VPS4B-202ENST00000588059 UBE4AQ14139 1066 aa14.03□□□□□ -0.16
VPS4B-202ENST00000588059 MTFR1Q15390 333 aa14.03□□□□□ -0.16
VPS4B-202ENST00000588059 GRIK5Q16478 980 aa14.03□□□□□ -0.16
VPS4B-202ENST00000588059 CCDC27Q2M243 656 aa14.03□□□□□ -0.16
VPS4B-202ENST00000588059 CCDC57Q2TAC2 916 aa14.03□□□□□ -0.16
VPS4B-202ENST00000588059 TAF7LQ5H9L4 462 aa14.03□□□□□ -0.16
VPS4B-202ENST00000588059 ERO1BQ86YB8 467 aa14.03□□□□□ -0.16
VPS4B-202ENST00000588059 WWC1Q8IX03 1113 aa14.03□□□□□ -0.16
VPS4B-202ENST00000588059 FAM84BQ96KN1 310 aaPredicted RBP14.03□□□□□ -0.16
VPS4B-202ENST00000588059 RBM27Q9P2N5 1060 aaKnown RBP14.03□□□□□ -0.16
VPS4B-202ENST00000588059 RANBP2P49792 3224 aaKnown RBP14.03□□□□□ -0.16
VPS4B-202ENST00000588059 F6X3S4 739 aa14.02□□□□□ -0.17
VPS4B-202ENST00000588059 CTGFP29279 349 aa14.02□□□□□ -0.17
VPS4B-202ENST00000588059 CACNB3P54284 484 aa14.02□□□□□ -0.17
VPS4B-202ENST00000588059 SNAPC2Q13487 334 aa14.02□□□□□ -0.17
VPS4B-202ENST00000588059 BEND3Q5T5X7 828 aa14.02□□□□□ -0.17
VPS4B-202ENST00000588059 ZKSCAN4Q969J2 545 aaPredicted RBP14.02□□□□□ -0.17
VPS4B-202ENST00000588059 WRNIP1Q96S55 665 aa14.02□□□□□ -0.17
VPS4B-202ENST00000588059 IL16Q14005 1332 aa14.01□□□□□ -0.17
VPS4B-202ENST00000588059 FANCIQ9NVI1 1328 aa14.01□□□□□ -0.17
VPS4B-202ENST00000588059 ECM2O94769 699 aaPredicted RBP14.01□□□□□ -0.17
VPS4B-202ENST00000588059 PPIL2Q13356 520 aa14.01□□□□□ -0.17
VPS4B-202ENST00000588059 C17orf99Q6UX52 265 aa14.01□□□□□ -0.17
VPS4B-202ENST00000588059 UBE2Q1Q7Z7E8 422 aa14.01□□□□□ -0.17
VPS4B-202ENST00000588059 MGAMO43451 1857 aa14.01□□□□□ -0.17
VPS4B-202ENST00000588059 RPAP1Q9BWH6 1393 aaPredicted RBP14□□□□□ -0.17
VPS4B-202ENST00000588059 ADGRA2Q96PE1 1338 aa14□□□□□ -0.17
VPS4B-202ENST00000588059 GRM8O00222 908 aa14□□□□□ -0.17
VPS4B-202ENST00000588059 HDLBPQ00341 1268 aaKnown RBP14□□□□□ -0.17
VPS4B-202ENST00000588059 DPF3Q92784 378 aa14□□□□□ -0.17
VPS4B-202ENST00000588059 TRIM47Q96LD4 638 aa14□□□□□ -0.17
VPS4B-202ENST00000588059 PRO3102Q9H379 93 aa14□□□□□ -0.17
VPS4B-202ENST00000588059 SRRDQ9UH36 339 aa14□□□□□ -0.17
VPS4B-202ENST00000588059 CPA4Q9UI42 421 aa14□□□□□ -0.17
VPS4B-202ENST00000588059 IQSEC3Q9UPP2 1182 aaPredicted RBP14□□□□□ -0.17
VPS4B-202ENST00000588059 OSBPP22059 807 aa13.99□□□□□ -0.17
VPS4B-202ENST00000588059 PSMC4P43686 418 aa13.99□□□□□ -0.17
VPS4B-202ENST00000588059 CHAF1AQ13111 956 aaPredicted RBP13.99□□□□□ -0.17
VPS4B-202ENST00000588059 FAM83AQ86UY5 434 aa13.99□□□□□ -0.17
VPS4B-202ENST00000588059 TEKT1Q969V4 418 aa13.99□□□□□ -0.17
VPS4B-202ENST00000588059 PUS3Q9BZE2 481 aaKnown RBP13.99□□□□□ -0.17
VPS4B-202ENST00000588059 MYH13Q9UKX3 1938 aa13.99□□□□□ -0.17
VPS4B-202ENST00000588059 VAMP4O75379 141 aa13.98□□□□□ -0.17
VPS4B-202ENST00000588059 GJB1P08034 283 aa13.98□□□□□ -0.17
VPS4B-202ENST00000588059 GRK4P32298 578 aa13.98□□□□□ -0.17
VPS4B-202ENST00000588059 GJA8P48165 433 aa13.98□□□□□ -0.17
VPS4B-202ENST00000588059 FKBP1CQ5VVH2 108 aa13.98□□□□□ -0.17
VPS4B-202ENST00000588059 FBXO33Q7Z6M2 555 aa13.98□□□□□ -0.17
VPS4B-202ENST00000588059 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.98□□□□□ -0.17
VPS4B-202ENST00000588059 NKX2-3Q8TAU0 364 aa13.98□□□□□ -0.17
VPS4B-202ENST00000588059 ZDHHC15Q96MV8 337 aa13.98□□□□□ -0.17
VPS4B-202ENST00000588059 TMOD2Q9NZR1 351 aa13.98□□□□□ -0.17
VPS4B-202ENST00000588059 RIPOR2Q9Y4F9 1068 aa13.98□□□□□ -0.17
VPS4B-202ENST00000588059 MYPNQ86TC9 1320 aa13.97□□□□□ -0.17
VPS4B-202ENST00000588059 CCL5P13501 91 aa13.97□□□□□ -0.17
VPS4B-202ENST00000588059 PPATQ06203 517 aa13.97□□□□□ -0.17
VPS4B-202ENST00000588059 DCAF15Q66K64 600 aa13.97□□□□□ -0.17
VPS4B-202ENST00000588059 APOBEC3HQ6NTF7 200 aaKnown RBP13.97□□□□□ -0.17
VPS4B-202ENST00000588059 ANKRD23Q86SG2 305 aa13.97□□□□□ -0.17
VPS4B-202ENST00000588059 RAET1EQ8TD07 263 aa13.97□□□□□ -0.17
VPS4B-202ENST00000588059 TBC1D22AQ8WUA7 517 aa13.97□□□□□ -0.17
VPS4B-202ENST00000588059 HOOK2Q96ED9 719 aa13.97□□□□□ -0.17
VPS4B-202ENST00000588059 HTATIP2Q9BUP3 242 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms