RNA–Protein interactions for RNA: ENST00000586813.5

TRAF4-216, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-216ENST00000586813 DZIP1LQ8IYY4 767 aaKnown RBP24.34■■□□□ 1.49
TRAF4-216ENST00000586813 ANKRD13AQ8IZ07 590 aa24.34■■□□□ 1.49
TRAF4-216ENST00000586813 SSH1Q8WYL5 1049 aa24.34■■□□□ 1.49
TRAF4-216ENST00000586813 IQSEC3Q9UPP2 1182 aaPredicted RBP24.34■■□□□ 1.49
TRAF4-216ENST00000586813 PDE8BO95263 885 aa24.33■■□□□ 1.49
TRAF4-216ENST00000586813 GJA5P36382 358 aa24.32■■□□□ 1.48
TRAF4-216ENST00000586813 CHAF1AQ13111 956 aaPredicted RBP24.32■■□□□ 1.48
TRAF4-216ENST00000586813 GRIK5Q16478 980 aa24.32■■□□□ 1.48
TRAF4-216ENST00000586813 CAVIN4Q5BKX8 364 aa24.32■■□□□ 1.48
TRAF4-216ENST00000586813 CDAN1Q8IWY9 1227 aa24.32■■□□□ 1.48
TRAF4-216ENST00000586813 KLHDC4Q8TBB5 520 aa24.32■■□□□ 1.48
TRAF4-216ENST00000586813 TEPSINQ96N21 525 aa24.32■■□□□ 1.48
TRAF4-216ENST00000586813 SLC34A2O95436 690 aa24.31■■□□□ 1.48
TRAF4-216ENST00000586813 TBC1D22AQ8WUA7 517 aa24.31■■□□□ 1.48
TRAF4-216ENST00000586813 USP44Q9H0E7 712 aa24.31■■□□□ 1.48
TRAF4-216ENST00000586813 HTTP42858 3142 aa24.3■■□□□ 1.48
TRAF4-216ENST00000586813 TCP10L2B9ZVM9 353 aa24.3■■□□□ 1.48
TRAF4-216ENST00000586813 FRAT2O75474 233 aaPredicted RBP24.3■■□□□ 1.48
TRAF4-216ENST00000586813 TMEM39BQ9GZU3 492 aa24.3■■□□□ 1.48
TRAF4-216ENST00000586813 TNNI2P48788 182 aa24.29■■□□□ 1.48
TRAF4-216ENST00000586813 HDLBPQ00341 1268 aaKnown RBP24.29■■□□□ 1.48
TRAF4-216ENST00000586813 SLFN5Q08AF3 891 aa24.29■■□□□ 1.48
TRAF4-216ENST00000586813 OPTNQ96CV9 577 aa24.29■■□□□ 1.48
TRAF4-216ENST00000586813 KIF16BQ96L93 1317 aa24.29■■□□□ 1.48
TRAF4-216ENST00000586813 ELP3Q9H9T3 547 aa24.28■■□□□ 1.48
TRAF4-216ENST00000586813 BCAMP50895 628 aa24.27■■□□□ 1.48
TRAF4-216ENST00000586813 CRHR2Q13324 411 aa24.27■■□□□ 1.48
TRAF4-216ENST00000586813 PUM3Q15397 648 aaKnown RBP24.27■■□□□ 1.48
TRAF4-216ENST00000586813 OTUD7BQ6GQQ9 843 aa24.27■■□□□ 1.48
TRAF4-216ENST00000586813 TEKT1Q969V4 418 aa24.27■■□□□ 1.48
TRAF4-216ENST00000586813 TESPA1A2RU30 521 aaPredicted RBP24.26■■□□□ 1.47
TRAF4-216ENST00000586813 FGFR2P21802 821 aa24.26■■□□□ 1.47
TRAF4-216ENST00000586813 ALDH1L2Q3SY69 923 aa24.26■■□□□ 1.47
TRAF4-216ENST00000586813 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.26■■□□□ 1.47
TRAF4-216ENST00000586813 PTPN18Q99952 460 aa24.26■■□□□ 1.47
TRAF4-216ENST00000586813 TRIM17Q9Y577 477 aa24.26■■□□□ 1.47
TRAF4-216ENST00000586813 RBBP6Q7Z6E9 1792 aaKnown RBP24.25■■□□□ 1.47
TRAF4-216ENST00000586813 IFIT1P09914 478 aaKnown RBP24.25■■□□□ 1.47
TRAF4-216ENST00000586813 RFX5P48382 616 aaPredicted RBP24.25■■□□□ 1.47
TRAF4-216ENST00000586813 VGLL4Q14135 290 aa24.25■■□□□ 1.47
TRAF4-216ENST00000586813 OTOP1Q7RTM1 612 aa24.25■■□□□ 1.47
TRAF4-216ENST00000586813 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.25■■□□□ 1.471e-6■□□□□ 8.2
TRAF4-216ENST00000586813 ZDHHC15Q96MV8 337 aa24.25■■□□□ 1.47
TRAF4-216ENST00000586813 MAST3O60307 1309 aa24.25■■□□□ 1.47
TRAF4-216ENST00000586813 EYA2O00167 538 aa24.24■■□□□ 1.47
TRAF4-216ENST00000586813 CACNB3P54284 484 aa24.24■■□□□ 1.47
TRAF4-216ENST00000586813 CNKSR2Q8WXI2 1034 aa24.24■■□□□ 1.47
TRAF4-216ENST00000586813 SMC4Q9NTJ3 1288 aa24.24■■□□□ 1.47
TRAF4-216ENST00000586813 SUGT1Q9Y2Z0 365 aa24.24■■□□□ 1.47
TRAF4-216ENST00000586813 CENPFP49454 3210 aa24.23■■□□□ 1.47
TRAF4-216ENST00000586813 CDCA7LQ96GN5 454 aa24.23■■□□□ 1.47
TRAF4-216ENST00000586813 ERO1AQ96HE7 468 aa24.23■■□□□ 1.47
TRAF4-216ENST00000586813 MS4A4AQ96JQ5 239 aa24.23■■□□□ 1.47
TRAF4-216ENST00000586813 MRIQ9BWK5 157 aa24.23■■□□□ 1.47
TRAF4-216ENST00000586813 SLC5A1P13866 664 aa24.22■■□□□ 1.47
TRAF4-216ENST00000586813 MAP3K9P80192 1104 aa24.22■■□□□ 1.47
TRAF4-216ENST00000586813 TMOD2Q9NZR1 351 aa24.22■■□□□ 1.47
TRAF4-216ENST00000586813 CSADQ9Y600 493 aa24.22■■□□□ 1.47
TRAF4-216ENST00000586813 APOBEC3HQ6NTF7 200 aaKnown RBP24.21■■□□□ 1.47
TRAF4-216ENST00000586813 CD99L2Q8TCZ2 262 aa24.21■■□□□ 1.47
TRAF4-216ENST00000586813 LPIN2Q92539 896 aa24.21■■□□□ 1.47
TRAF4-216ENST00000586813 RPAP1Q9BWH6 1393 aaPredicted RBP24.2■■□□□ 1.46
TRAF4-216ENST00000586813 FKBP1CQ5VVH2 108 aa24.2■■□□□ 1.46
TRAF4-216ENST00000586813 ATG9AQ7Z3C6 839 aa24.2■■□□□ 1.46
TRAF4-216ENST00000586813 FAM83AQ86UY5 434 aa24.2■■□□□ 1.46
TRAF4-216ENST00000586813 BRI3BPQ8WY22 251 aa24.2■■□□□ 1.46
TRAF4-216ENST00000586813 OTUD5Q96G74 571 aa24.2■■□□□ 1.46
TRAF4-216ENST00000586813 CCL15-CCL14A0A0B4J2E2 113 aa24.19■■□□□ 1.46
TRAF4-216ENST00000586813 UBTFL1P0CB47 393 aaPredicted RBP24.19■■□□□ 1.46
TRAF4-216ENST00000586813 GTF2A2P52657 109 aa24.19■■□□□ 1.46
TRAF4-216ENST00000586813 SP3Q02447 781 aa24.19■■□□□ 1.46
TRAF4-216ENST00000586813 CCL15Q16663 113 aa24.19■■□□□ 1.46
TRAF4-216ENST00000586813 HHIPL2Q6UWX4 724 aa24.19■■□□□ 1.46
TRAF4-216ENST00000586813 TRMT2AQ8IZ69 625 aaKnown RBP24.19■■□□□ 1.46
TRAF4-216ENST00000586813 AK9Q5TCS8 1911 aa24.18■■□□□ 1.46
TRAF4-216ENST00000586813 SPDYE5A6NIY4 337 aa24.18■■□□□ 1.46
TRAF4-216ENST00000586813 PRPF38BQ5VTL8 546 aaKnown RBP24.18■■□□□ 1.46
TRAF4-216ENST00000586813 WDR66Q8TBY9 1149 aa24.18■■□□□ 1.46
TRAF4-216ENST00000586813 SNCAIPQ9Y6H5 919 aa24.18■■□□□ 1.46
TRAF4-216ENST00000586813 HOOK2Q96ED9 719 aa24.17■■□□□ 1.46
TRAF4-216ENST00000586813 WRNIP1Q96S55 665 aa24.17■■□□□ 1.46
TRAF4-216ENST00000586813 PTPN22Q9Y2R2 807 aa24.17■■□□□ 1.46
TRAF4-216ENST00000586813 CIAO1O76071 339 aa24.16■■□□□ 1.46
TRAF4-216ENST00000586813 CAP1Q01518 475 aa24.16■■□□□ 1.46
TRAF4-216ENST00000586813 TAF1CQ15572 869 aaPredicted RBP24.16■■□□□ 1.46
TRAF4-216ENST00000586813 SIL1Q9H173 461 aa24.16■■□□□ 1.46
TRAF4-216ENST00000586813 EFCC1Q9HA90 598 aa24.16■■□□□ 1.46
TRAF4-216ENST00000586813 FBXO3Q9UK99 471 aa24.16■■□□□ 1.46
TRAF4-216ENST00000586813 BRCA2P51587 3418 aa24.16■■□□□ 1.46
TRAF4-216ENST00000586813 ZSWIM8A7E2V4 1837 aa24.15■■□□□ 1.46
TRAF4-216ENST00000586813 CT47B1P0C2W7 299 aaPredicted RBP24.15■■□□□ 1.46
TRAF4-216ENST00000586813 ATP2B3Q16720 1220 aa24.15■■□□□ 1.46
TRAF4-216ENST00000586813 INTS3Q68E01 1043 aaKnown RBP24.15■■□□□ 1.46
TRAF4-216ENST00000586813 FAM43AQ8N2R8 423 aa24.15■■□□□ 1.46
TRAF4-216ENST00000586813 ZKSCAN4Q969J2 545 aaPredicted RBP24.15■■□□□ 1.46
TRAF4-216ENST00000586813 ZFYVE28Q9HCC9 887 aa24.15■■□□□ 1.46
TRAF4-216ENST00000586813 NOB1Q9ULX3 412 aaKnown RBP24.15■■□□□ 1.46
TRAF4-216ENST00000586813 DOCK2Q92608 1830 aa24.14■■□□□ 1.46
TRAF4-216ENST00000586813 MYH2Q9UKX2 1941 aa24.14■■□□□ 1.46
TRAF4-216ENST00000586813 DCAF15Q66K64 600 aa24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms