RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 EDC3Q96F86 508 aaKnown RBP12.43□□□□□ -0.42
LIG3-203ENST00000585370 DSCC1Q9BVC3 393 aa12.43□□□□□ -0.42
LIG3-203ENST00000585370 VPS33BQ9H267 617 aa12.43□□□□□ -0.42
LIG3-203ENST00000585370 RBM8AQ9Y5S9 174 aaKnown RBP12.43□□□□□ -0.42
LIG3-203ENST00000585370 SNX14Q9Y5W7 946 aa12.43□□□□□ -0.42
LIG3-203ENST00000585370 FOXN1O15353 648 aa12.42□□□□□ -0.42
LIG3-203ENST00000585370 IGSF3O75054 1194 aa12.42□□□□□ -0.42
LIG3-203ENST00000585370 LMOD1P29536 600 aaPredicted RBP12.42□□□□□ -0.42
LIG3-203ENST00000585370 ZAP70P43403 619 aa12.42□□□□□ -0.42
LIG3-203ENST00000585370 FMR1Q06787 632 aaKnown RBP eCLIP12.42□□□□□ -0.42
LIG3-203ENST00000585370 TMX4Q9H1E5 349 aaPredicted RBP12.42□□□□□ -0.42
LIG3-203ENST00000585370 PALD1Q9ULE6 856 aa12.42□□□□□ -0.42
LIG3-203ENST00000585370 MINPP1Q9UNW1 487 aa12.42□□□□□ -0.42
LIG3-203ENST00000585370 RASSF10A6NK89 507 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 MCAMP43121 646 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 CXCL9Q07325 125 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 UBE3CQ15386 1083 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 DEFB115Q30KQ5 88 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 CAVIN4Q5BKX8 364 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 CREB3L3Q68CJ9 461 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 TMED8Q6PL24 325 aaPredicted RBP12.41□□□□□ -0.42
LIG3-203ENST00000585370 DPP8Q6V1X1 898 aaPredicted RBP12.41□□□□□ -0.42
LIG3-203ENST00000585370 MPNDQ8N594 471 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 HELBQ8NG08 1087 aaPredicted RBP12.41□□□□□ -0.42
LIG3-203ENST00000585370 APPBP2Q92624 585 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 ALDH8A1Q9H2A2 487 aaPredicted RBP12.41□□□□□ -0.42
LIG3-203ENST00000585370 CTNNA3Q9UI47 895 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 ZNRF3Q9ULT6 936 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 CYP46A1Q9Y6A2 500 aa12.41□□□□□ -0.42
LIG3-203ENST00000585370 SEMA3EO15041 775 aa12.4□□□□□ -0.42
LIG3-203ENST00000585370 PHKA1P46020 1223 aa12.4□□□□□ -0.42
LIG3-203ENST00000585370 GRAPQ13588 217 aa12.4□□□□□ -0.42
LIG3-203ENST00000585370 USP50Q70EL3 339 aaPredicted RBP12.4□□□□□ -0.42
LIG3-203ENST00000585370 TMC4Q7Z404 712 aa12.4□□□□□ -0.42
LIG3-203ENST00000585370 SPATA5Q8NB90 893 aa12.4□□□□□ -0.42
LIG3-203ENST00000585370 SUPT20HQ8NEM7 779 aa12.4□□□□□ -0.42
LIG3-203ENST00000585370 GRAPLQ8TC17 118 aaPredicted RBP12.4□□□□□ -0.42
LIG3-203ENST00000585370 INTS4Q96HW7 963 aaKnown RBP12.4□□□□□ -0.42
LIG3-203ENST00000585370 SLKQ9H2G2 1235 aaPredicted RBP12.4□□□□□ -0.42
LIG3-203ENST00000585370 ZSWIM6Q9HCJ5 1215 aa12.4□□□□□ -0.42
LIG3-203ENST00000585370 WBP1LQ9NX94 342 aa12.4□□□□□ -0.42
LIG3-203ENST00000585370 GPRC5DQ9NZD1 345 aa12.4□□□□□ -0.42
LIG3-203ENST00000585370 TRAF5O00463 557 aa12.39□□□□□ -0.43
LIG3-203ENST00000585370 SLC27A2O14975 620 aa12.39□□□□□ -0.43
LIG3-203ENST00000585370 CD2BP2O95400 341 aaKnown RBP12.39□□□□□ -0.43
LIG3-203ENST00000585370 HMGB1P09429 215 aaKnown RBP12.39□□□□□ -0.43
LIG3-203ENST00000585370 DDIT3P35638 169 aa12.39□□□□□ -0.43
LIG3-203ENST00000585370 KIAA2012Q0VF49 1180 aa12.39□□□□□ -0.43
LIG3-203ENST00000585370 MAP3K12Q12852 859 aa12.39□□□□□ -0.43
LIG3-203ENST00000585370 VPS53Q5VIR6 699 aa12.39□□□□□ -0.43
LIG3-203ENST00000585370 CST9Q5W186 159 aa12.39□□□□□ -0.43
LIG3-203ENST00000585370 ZNF589Q86UQ0 364 aaPredicted RBP12.39□□□□□ -0.43
LIG3-203ENST00000585370 RASEFQ8IZ41 740 aa12.39□□□□□ -0.43
LIG3-203ENST00000585370 CELF1Q92879 486 aaKnown RBP12.39□□□□□ -0.43
LIG3-203ENST00000585370 ZSCAN31Q96LW9 406 aaPredicted RBP12.39□□□□□ -0.43
LIG3-203ENST00000585370 ADARB2Q9NS39 739 aaKnown RBP12.39□□□□□ -0.43
LIG3-203ENST00000585370 ABT1Q9ULW3 272 aaKnown RBP12.39□□□□□ -0.43
LIG3-203ENST00000585370 NDUFB9Q9Y6M9 179 aa12.39□□□□□ -0.43
LIG3-203ENST00000585370 TAF1P21675 1872 aa12.39□□□□□ -0.43
LIG3-203ENST00000585370 WDR33Q9C0J8 1336 aaKnown RBP12.38□□□□□ -0.43
LIG3-203ENST00000585370 RAD17O75943 681 aa12.38□□□□□ -0.43
LIG3-203ENST00000585370 CYP2E1P05181 493 aaPredicted RBP12.38□□□□□ -0.43
LIG3-203ENST00000585370 ADD2P35612 726 aa12.38□□□□□ -0.43
LIG3-203ENST00000585370 GMPSP49915 693 aaPredicted RBP12.38□□□□□ -0.43
LIG3-203ENST00000585370 CUL4AQ13619 759 aa12.38□□□□□ -0.43
LIG3-203ENST00000585370 SCARF1Q14162 830 aa12.38□□□□□ -0.43
LIG3-203ENST00000585370 ANKRD1Q15327 319 aa12.38□□□□□ -0.43
LIG3-203ENST00000585370 WASHC4Q2M389 1173 aa12.38□□□□□ -0.43
LIG3-203ENST00000585370 RUFY3Q7L099 469 aa12.38□□□□□ -0.43
LIG3-203ENST00000585370 PRDM10Q9NQV6 1147 aa12.38□□□□□ -0.43
LIG3-203ENST00000585370 DENND2AQ9ULE3 1009 aa12.38□□□□□ -0.43
LIG3-203ENST00000585370 LEMD3Q9Y2U8 911 aa12.38□□□□□ -0.43
LIG3-203ENST00000585370 ZNF804BA4D1E1 1349 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 PDS5AQ29RF7 1337 aaKnown RBP12.37□□□□□ -0.43
LIG3-203ENST00000585370 YDJCA8MPS7 323 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 CASTP20810 708 aaKnown RBP12.37□□□□□ -0.43
LIG3-203ENST00000585370 CTCFP49711 727 aaPredicted RBP12.37□□□□□ -0.43
LIG3-203ENST00000585370 NUCB2P80303 420 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 SLC9C2Q5TAH2 1124 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 CIAPIN1Q6FI81 312 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 FBXO33Q7Z6M2 555 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 VPS37DQ86XT2 251 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 AIDAQ96BJ3 306 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 TMX3Q96JJ7 454 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 JAKMIP1Q96N16 626 aaKnown RBP12.37□□□□□ -0.43
LIG3-203ENST00000585370 TTC14Q96N46 770 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 SH2B1Q9NRF2 756 aaPredicted RBP12.37□□□□□ -0.43
LIG3-203ENST00000585370 PDRG1Q9NUG6 133 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 LIMCH1Q9UPQ0 1083 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 ARAP2Q8WZ64 1704 aa12.37□□□□□ -0.43
LIG3-203ENST00000585370 HSPD1P10809 573 aaKnown RBP12.36□□□□□ -0.43
LIG3-203ENST00000585370 BCAMP50895 628 aa12.36□□□□□ -0.43
LIG3-203ENST00000585370 HIRAP54198 1017 aaPredicted RBP12.36□□□□□ -0.43
LIG3-203ENST00000585370 RASGRF1Q13972 1273 aa12.36□□□□□ -0.43
LIG3-203ENST00000585370 BLOC1S2Q6QNY1 142 aa12.36□□□□□ -0.43
LIG3-203ENST00000585370 C15orf52Q6ZUT6 534 aaKnown RBP12.36□□□□□ -0.43
LIG3-203ENST00000585370 SPRYD3Q8NCJ5 442 aa12.36□□□□□ -0.43
LIG3-203ENST00000585370 OSBP2Q969R2 916 aa12.36□□□□□ -0.43
LIG3-203ENST00000585370 SEC62Q99442 399 aaKnown RBP12.36□□□□□ -0.43
LIG3-203ENST00000585370 UPF3BQ9BZI7 483 aaKnown RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms