RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 NRG1Q02297 640 aaPredicted RBP7.81□□□□□ -1.16
SMCHD1-204ENST00000581226 PPP2R3AQ06190 1150 aa7.81□□□□□ -1.16
SMCHD1-204ENST00000581226 DUOXA2Q1HG44 320 aa7.81□□□□□ -1.16
SMCHD1-204ENST00000581226 USP26Q9BXU7 913 aa7.81□□□□□ -1.16
SMCHD1-204ENST00000581226 TMEM39AQ9NV64 488 aa7.81□□□□□ -1.16
SMCHD1-204ENST00000581226 TTF2Q9UNY4 1162 aaKnown RBP7.81□□□□□ -1.16
SMCHD1-204ENST00000581226 C1QTNF9BB2RNN3 333 aa7.8□□□□□ -1.16
SMCHD1-204ENST00000581226 FBXO24O75426 580 aa7.8□□□□□ -1.16
SMCHD1-204ENST00000581226 CHRNA4P43681 627 aa7.8□□□□□ -1.16
SMCHD1-204ENST00000581226 CD163Q86VB7 1156 aa7.8□□□□□ -1.16
SMCHD1-204ENST00000581226 UBASH3BQ8TF42 649 aa7.8□□□□□ -1.16
SMCHD1-204ENST00000581226 CEP44Q9C0F1 390 aa7.8□□□□□ -1.16
SMCHD1-204ENST00000581226 WISP1O95388 367 aa7.79□□□□□ -1.16
SMCHD1-204ENST00000581226 CYP11A1P05108 521 aa7.79□□□□□ -1.16
SMCHD1-204ENST00000581226 CTSHP09668 335 aa7.79□□□□□ -1.16
SMCHD1-204ENST00000581226 PLA2G4EQ3MJ16 856 aa7.79□□□□□ -1.16
SMCHD1-204ENST00000581226 ACAD11Q709F0 780 aa7.79□□□□□ -1.16
SMCHD1-204ENST00000581226 NECAB3Q96P71 396 aaPredicted RBP7.79□□□□□ -1.16
SMCHD1-204ENST00000581226 MSTNO14793 375 aa7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 MAOBP27338 520 aa7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 AP3B2Q13367 1082 aa7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 ADGRE1Q14246 886 aa7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 POU4F3Q15319 338 aa7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 MEI1Q5TIA1 1274 aa7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 TMEM130Q8N3G9 435 aa7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 ANKRD24Q8TF21 1146 aa7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 CRELD1Q96HD1 420 aa7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 CORO1BQ9BR76 489 aa7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 TRIM56Q9BRZ2 755 aaKnown RBP7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 AKTIPQ9H8T0 292 aa7.78□□□□□ -1.16
SMCHD1-204ENST00000581226 F8W735 103 aaPredicted RBP7.77□□□□□ -1.17
SMCHD1-204ENST00000581226 ALX3O95076 343 aa7.77□□□□□ -1.17
SMCHD1-204ENST00000581226 MRPL58Q14197 206 aaKnown RBP7.77□□□□□ -1.17
SMCHD1-204ENST00000581226 MBTPS1Q14703 1052 aa7.77□□□□□ -1.17
SMCHD1-204ENST00000581226 TAF1CQ15572 869 aaPredicted RBP7.77□□□□□ -1.17
SMCHD1-204ENST00000581226 CCDC85BQ15834 202 aaPredicted RBP7.77□□□□□ -1.17
SMCHD1-204ENST00000581226 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.77□□□□□ -1.17
SMCHD1-204ENST00000581226 AGGF1Q8N302 714 aaeCLIP7.77□□□□□ -1.17
SMCHD1-204ENST00000581226 WFDC12Q8WWY7 111 aa7.77□□□□□ -1.17
SMCHD1-204ENST00000581226 NRSN2Q9GZP1 204 aa7.77□□□□□ -1.17
SMCHD1-204ENST00000581226 LOC100289279A0A1B0GTE1 492 aa7.76□□□□□ -1.17
SMCHD1-204ENST00000581226 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.76□□□□□ -1.17
SMCHD1-204ENST00000581226 ENC1O14682 589 aa7.76□□□□□ -1.17
SMCHD1-204ENST00000581226 ADAM23O75077 832 aa7.76□□□□□ -1.17
SMCHD1-204ENST00000581226 NME2P22392 152 aa7.76□□□□□ -1.17
SMCHD1-204ENST00000581226 IREB2P48200 963 aaKnown RBP7.76□□□□□ -1.17
SMCHD1-204ENST00000581226 KIAA1211Q6ZU35 1233 aa7.76□□□□□ -1.17
SMCHD1-204ENST00000581226 SV2BQ7L1I2 683 aa7.76□□□□□ -1.17
SMCHD1-204ENST00000581226 SULF2Q8IWU5 870 aa7.76□□□□□ -1.17
SMCHD1-204ENST00000581226 RUSC1Q9BVN2 902 aa7.76□□□□□ -1.17
SMCHD1-204ENST00000581226 SAMM50Q9Y512 469 aa7.76□□□□□ -1.17
SMCHD1-204ENST00000581226 USP31Q70CQ4 1352 aa7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 PAGE1O75459 146 aa7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 ECEL1O95672 775 aa7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 DLGAP3O95886 979 aa7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 ITGB2P05107 769 aa7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 CELA3AP09093 270 aa7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 ARNTP27540 789 aa7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 NOS3P29474 1203 aa7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 ST13P50502 369 aaKnown RBP7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 TXNRD3Q86VQ6 643 aa7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 MRRFQ96E11 262 aaKnown RBP7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 ZC3H12CQ9C0D7 883 aaKnown RBP7.75□□□□□ -1.17
SMCHD1-204ENST00000581226 CTSBP07858 339 aa7.74□□□□□ -1.17
SMCHD1-204ENST00000581226 GATA4P43694 442 aa7.74□□□□□ -1.17
SMCHD1-204ENST00000581226 EXOSC6Q5RKV6 272 aaKnown RBP7.74□□□□□ -1.17
SMCHD1-204ENST00000581226 NUTM2GQ5VZR2 741 aa7.74□□□□□ -1.17
SMCHD1-204ENST00000581226 SPOCK3Q9BQ16 436 aa7.74□□□□□ -1.17
SMCHD1-204ENST00000581226 EMILIN2Q9BXX0 1053 aa7.74□□□□□ -1.17
SMCHD1-204ENST00000581226 RNF208Q9H0X6 261 aa7.74□□□□□ -1.17
SMCHD1-204ENST00000581226 CBX8Q9HC52 389 aa7.74□□□□□ -1.17
SMCHD1-204ENST00000581226 MEGF11A6BM72 1044 aa7.73□□□□□ -1.17
SMCHD1-204ENST00000581226 UNCXA6NJT0 531 aa7.73□□□□□ -1.17
SMCHD1-204ENST00000581226 GSTP1P09211 210 aaKnown RBP7.73□□□□□ -1.17
SMCHD1-204ENST00000581226 GLB1P16278 677 aa7.73□□□□□ -1.17
SMCHD1-204ENST00000581226 PDE3AQ14432 1141 aa7.73□□□□□ -1.17
SMCHD1-204ENST00000581226 HP1BP3Q5SSJ5 553 aaPredicted RBP7.73□□□□□ -1.17
SMCHD1-204ENST00000581226 STK35Q8TDR2 534 aa7.73□□□□□ -1.17
SMCHD1-204ENST00000581226 BMP6P22004 513 aa7.72□□□□□ -1.17
SMCHD1-204ENST00000581226 TTBK2Q6IQ55 1244 aa7.72□□□□□ -1.17
SMCHD1-204ENST00000581226 TMEM87AQ8NBN3 555 aa7.72□□□□□ -1.17
SMCHD1-204ENST00000581226 KCNB2Q92953 911 aa7.72□□□□□ -1.17
SMCHD1-204ENST00000581226 ZNF428Q96B54 188 aa7.72□□□□□ -1.17
SMCHD1-204ENST00000581226 TMPRSS13Q9BYE2 586 aa7.72□□□□□ -1.17
SMCHD1-204ENST00000581226 KRTAP9-2Q9BYQ4 174 aa7.72□□□□□ -1.17
SMCHD1-204ENST00000581226 BACH2Q9BYV9 841 aa7.72□□□□□ -1.17
SMCHD1-204ENST00000581226 RAD18Q9NS91 495 aa7.72□□□□□ -1.17
SMCHD1-204ENST00000581226 MAP3K11Q16584 847 aa7.71□□□□□ -1.18
SMCHD1-204ENST00000581226 TSNAXIP1Q2TAA8 658 aa7.71□□□□□ -1.18
SMCHD1-204ENST00000581226 PCNX4Q63HM2 1172 aa7.71□□□□□ -1.18
SMCHD1-204ENST00000581226 MAP1SQ66K74 1059 aaPredicted RBP7.71□□□□□ -1.18
SMCHD1-204ENST00000581226 FDX2Q6P4F2 183 aa7.71□□□□□ -1.18
SMCHD1-204ENST00000581226 PDZD3Q86UT5 571 aa7.71□□□□□ -1.18
SMCHD1-204ENST00000581226 NOC4LQ9BVI4 516 aaKnown RBP7.71□□□□□ -1.18
SMCHD1-204ENST00000581226 CEP41Q9BYV8 373 aa7.71□□□□□ -1.18
SMCHD1-204ENST00000581226 CCDC86Q9H6F5 360 aaKnown RBP7.71□□□□□ -1.18
SMCHD1-204ENST00000581226 CYP4F12Q9HCS2 524 aa7.71□□□□□ -1.18
SMCHD1-204ENST00000581226 KRTAP9-6A0A140TA67 174 aa7.7□□□□□ -1.18
SMCHD1-204ENST00000581226 VAMP1P23763 118 aa7.7□□□□□ -1.18
SMCHD1-204ENST00000581226 RBM25P49756 843 aaKnown RBP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms