RNA–Protein interactions for RNA: ENST00000580745.5

PPP4R1-218, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 535 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-218	ENST00000580745	TMEM39B	Q9GZU3	492 aa		13.92	□□□□□ -0.18
PPP4R1-218	ENST00000580745	PPP2R3B	Q9Y5P8	575 aa		13.92	□□□□□ -0.18
PPP4R1-218	ENST00000580745	PPP1R12B	O60237	982 aa	Predicted RBP	13.91	□□□□□ -0.18
PPP4R1-218	ENST00000580745	IFIT1	P09914	478 aa	Known RBP	13.91	□□□□□ -0.18
PPP4R1-218	ENST00000580745	CT47B1	P0C2W7	299 aa	Predicted RBP	13.91	□□□□□ -0.18
PPP4R1-218	ENST00000580745	WNK4	Q96J92	1243 aa		13.91	□□□□□ -0.18
PPP4R1-218	ENST00000580745	COL1A1	P02452	1464 aa	Predicted RBP	13.91	□□□□□ -0.18
PPP4R1-218	ENST00000580745	SLC5A1	P13866	664 aa		13.9	□□□□□ -0.18
PPP4R1-218	ENST00000580745	CTU1	Q7Z7A3	348 aa	Known RBP	13.9	□□□□□ -0.18
PPP4R1-218	ENST00000580745	CNKSR2	Q8WXI2	1034 aa		13.9	□□□□□ -0.18
PPP4R1-218	ENST00000580745	LPIN2	Q92539	896 aa		13.9	□□□□□ -0.18
PPP4R1-218	ENST00000580745	ELP3	Q9H9T3	547 aa		13.9	□□□□□ -0.18
PPP4R1-218	ENST00000580745		A0A1B0GUL6	1792 aa		13.9	□□□□□ -0.18
PPP4R1-218	ENST00000580745	CACNA1F	O60840	1977 aa		13.89	□□□□□ -0.19
PPP4R1-218	ENST00000580745	GPR25	O00155	361 aa		13.89	□□□□□ -0.19
PPP4R1-218	ENST00000580745	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
PPP4R1-218	ENST00000580745	BCAR3	O75815	825 aa		13.89	□□□□□ -0.19
PPP4R1-218	ENST00000580745	ADORA1	P30542	326 aa		13.89	□□□□□ -0.19
PPP4R1-218	ENST00000580745	IREB2	P48200	963 aa	Known RBP	13.89	□□□□□ -0.19
PPP4R1-218	ENST00000580745	SREBF2	Q12772	1141 aa		13.89	□□□□□ -0.19
PPP4R1-218	ENST00000580745	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.89	□□□□□ -0.19
PPP4R1-218	ENST00000580745	TBC1D22A	Q8WUA7	517 aa		13.89	□□□□□ -0.19
PPP4R1-218	ENST00000580745	TEKT1	Q969V4	418 aa		13.89	□□□□□ -0.19
PPP4R1-218	ENST00000580745	SOX10	P56693	466 aa		13.88	□□□□□ -0.19
PPP4R1-218	ENST00000580745	TNFAIP1	Q13829	316 aa		13.88	□□□□□ -0.19
PPP4R1-218	ENST00000580745	DIXDC1	Q155Q3	683 aa		13.88	□□□□□ -0.19
PPP4R1-218	ENST00000580745	ATP2B3	Q16720	1220 aa		13.88	□□□□□ -0.19
PPP4R1-218	ENST00000580745	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.88	□□□□□ -0.19
PPP4R1-218	ENST00000580745	MIER1	Q8N108	512 aa		13.88	□□□□□ -0.19
PPP4R1-218	ENST00000580745	CEP126	Q9P2H0	1117 aa		13.88	□□□□□ -0.19
PPP4R1-218	ENST00000580745	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.88	□□□□□ -0.19
PPP4R1-218	ENST00000580745	CASP8AP2	Q9UKL3	1982 aa		13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	MANSC4	A6NHS7	340 aa	Predicted RBP	13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	CIAO1	O76071	339 aa		13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	PHKA1	P46020	1223 aa		13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	HDLBP	Q00341	1268 aa	Known RBP	13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	INTS3	Q68E01	1043 aa	Known RBP	13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	IFNL1	Q8IU54	200 aa		13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	ANKRD13A	Q8IZ07	590 aa		13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	FRAT1	Q92837	279 aa	Predicted RBP	13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	CLUAP1	Q96AJ1	413 aa		13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	ZDHHC15	Q96MV8	337 aa		13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	PTPN18	Q99952	460 aa		13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	KIF16B	Q96L93	1317 aa		13.87	□□□□□ -0.19
PPP4R1-218	ENST00000580745	ZBTB48	P10074	688 aa	Predicted RBP	13.86	□□□□□ -0.19
PPP4R1-218	ENST00000580745	TRIM27	P14373	513 aa		13.86	□□□□□ -0.19
PPP4R1-218	ENST00000580745	PRDX5	P30044	214 aa		13.86	□□□□□ -0.19
PPP4R1-218	ENST00000580745	IL15	P40933	162 aa	Predicted RBP	13.86	□□□□□ -0.19
PPP4R1-218	ENST00000580745	RGS19	P49795	217 aa		13.86	□□□□□ -0.19
PPP4R1-218	ENST00000580745	VGLL4	Q14135	290 aa		13.86	□□□□□ -0.19
PPP4R1-218	ENST00000580745	OPTN	Q96CV9	577 aa		13.86	□□□□□ -0.19
PPP4R1-218	ENST00000580745	COPRS	Q9NQ92	184 aa		13.86	□□□□□ -0.19
PPP4R1-218	ENST00000580745	HPS5	Q9UPZ3	1129 aa		13.86	□□□□□ -0.19
PPP4R1-218	ENST00000580745	FKTN	O75072	461 aa		13.85	□□□□□ -0.19
PPP4R1-218	ENST00000580745	TNNI2	P48788	182 aa		13.85	□□□□□ -0.19
PPP4R1-218	ENST00000580745	TIMM10	P62072	90 aa		13.85	□□□□□ -0.19
PPP4R1-218	ENST00000580745	MLLT1	Q03111	559 aa	Predicted RBP	13.85	□□□□□ -0.19
PPP4R1-218	ENST00000580745	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
PPP4R1-218	ENST00000580745	WDR66	Q8TBY9	1149 aa		13.85	□□□□□ -0.19
PPP4R1-218	ENST00000580745	ARHGAP45	Q92619	1136 aa		13.85	□□□□□ -0.19
PPP4R1-218	ENST00000580745	DAGLA	Q9Y4D2	1042 aa		13.85	□□□□□ -0.19
PPP4R1-218	ENST00000580745	SRGAP3	O43295	1099 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	MAP3K9	P80192	1104 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	TFCP2	Q12800	502 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	NFIA	Q12857	509 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	CCDC102B	Q68D86	513 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	HHIPL2	Q6UWX4	724 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	MIGA2	Q7L4E1	593 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	MS4A4A	Q96JQ5	239 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	MRI	Q9BWK5	157 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	CFHR5	Q9BXR6	569 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	FBXO3	Q9UK99	471 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	SUGT1	Q9Y2Z0	365 aa		13.84	□□□□□ -0.19
PPP4R1-218	ENST00000580745	UNCX	A6NJT0	531 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	GNAI3	P08754	354 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	INHBE	P58166	350 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	CAP1	Q01518	475 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	TCP10	Q12799	353 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	CRHR2	Q13324	411 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	CDC42EP5	Q6NZY7	148 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	ATF7IP	Q6VMQ6	1270 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	ZFPM1	Q8IX07	1006 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	BRI3BP	Q8WY22	251 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	OTUD5	Q96G74	571 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	TMOD2	Q9NZR1	351 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	MAST3	O60307	1309 aa		13.83	□□□□□ -0.2
PPP4R1-218	ENST00000580745	PNMA6E	A0A0J9YXQ4	647 aa		13.82	□□□□□ -0.2
PPP4R1-218	ENST00000580745	TESPA1	A2RU30	521 aa	Predicted RBP	13.82	□□□□□ -0.2
PPP4R1-218	ENST00000580745	ALDH1A1	P00352	501 aa		13.82	□□□□□ -0.2
PPP4R1-218	ENST00000580745	LDHB	P07195	334 aa	Known RBP	13.82	□□□□□ -0.2
PPP4R1-218	ENST00000580745	RASGRF1	Q13972	1273 aa		13.82	□□□□□ -0.2
PPP4R1-218	ENST00000580745	NOM1	Q5C9Z4	860 aa	Known RBP	13.82	□□□□□ -0.2
PPP4R1-218	ENST00000580745	TMEM57	Q8N5G2	664 aa		13.82	□□□□□ -0.2
PPP4R1-218	ENST00000580745	WRNIP1	Q96S55	665 aa		13.82	□□□□□ -0.2
PPP4R1-218	ENST00000580745	GNL3L	Q9NVN8	582 aa	Known RBP	13.82	□□□□□ -0.2
PPP4R1-218	ENST00000580745	SNCAIP	Q9Y6H5	919 aa		13.82	□□□□□ -0.2
PPP4R1-218	ENST00000580745		A0A1B0GUL7	405 aa		13.81	□□□□□ -0.2
PPP4R1-218	ENST00000580745	IPO8	O15397	1037 aa	Known RBP	13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms