RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 USP17L4A6NCW7 530 aa18.32■□□□□ 0.52
SS18-215ENST00000580642 GTF2IP78347 998 aa18.32■□□□□ 0.52
SS18-215ENST00000580642 DOK7Q18PE1 504 aa18.32■□□□□ 0.52
SS18-215ENST00000580642 MFSD14BQ5SR56 506 aa18.32■□□□□ 0.52
SS18-215ENST00000580642 USP17L1Q7RTZ2 530 aa18.32■□□□□ 0.52
SS18-215ENST00000580642 DZIP1Q86YF9 867 aaKnown RBP18.32■□□□□ 0.52
SS18-215ENST00000580642 U3KPZ7 1027 aaPredicted RBP18.32■□□□□ 0.52
SS18-215ENST00000580642 NFKBIEO00221 500 aa18.31■□□□□ 0.52
SS18-215ENST00000580642 CYP7A1P22680 504 aa18.31■□□□□ 0.52
SS18-215ENST00000580642 HDLBPQ00341 1268 aaKnown RBP18.31■□□□□ 0.52
SS18-215ENST00000580642 MECOMQ03112 1051 aa18.31■□□□□ 0.52
SS18-215ENST00000580642 AIDAQ96BJ3 306 aa18.31■□□□□ 0.52
SS18-215ENST00000580642 IL25Q9H293 177 aa18.31■□□□□ 0.52
SS18-215ENST00000580642 ZNRF3Q9ULT6 936 aa18.31■□□□□ 0.52
SS18-215ENST00000580642 RBM19Q9Y4C8 960 aaKnown RBP18.31■□□□□ 0.52
SS18-215ENST00000580642 ARFGEF1Q9Y6D6 1849 aa18.3■□□□□ 0.52
SS18-215ENST00000580642 MYH13Q9UKX3 1938 aa18.3■□□□□ 0.52
SS18-215ENST00000580642 GPAA1O43292 621 aa18.3■□□□□ 0.52
SS18-215ENST00000580642 PRDX5P30044 214 aa18.3■□□□□ 0.52
SS18-215ENST00000580642 HSPA4P34932 840 aa18.3■□□□□ 0.52
SS18-215ENST00000580642 RNF20Q5VTR2 975 aa18.3■□□□□ 0.52
SS18-215ENST00000580642 ZNF589Q86UQ0 364 aaPredicted RBP18.3■□□□□ 0.52
SS18-215ENST00000580642 NIM1KQ8IY84 436 aa18.3■□□□□ 0.52
SS18-215ENST00000580642 PUS7LQ9H0K6 701 aaKnown RBP18.3■□□□□ 0.52
SS18-215ENST00000580642 DBNDD1Q9H9R9 158 aa18.3■□□□□ 0.52
SS18-215ENST00000580642 ZNF277Q9NRM2 450 aaPredicted RBP18.3■□□□□ 0.52
SS18-215ENST00000580642 CTNNA3Q9UI47 895 aa18.3■□□□□ 0.52
SS18-215ENST00000580642 ZMYM6O95789 1325 aa18.29■□□□□ 0.52
SS18-215ENST00000580642 FER1L6Q2WGJ9 1857 aa18.29■□□□□ 0.52
SS18-215ENST00000580642 BAG3O95817 575 aa18.29■□□□□ 0.52
SS18-215ENST00000580642 PPP4CP60510 307 aa18.29■□□□□ 0.52
SS18-215ENST00000580642 ALX1Q15699 326 aa18.29■□□□□ 0.52
SS18-215ENST00000580642 DACT2Q5SW24 774 aa18.29■□□□□ 0.52
SS18-215ENST00000580642 JDP2Q8WYK2 163 aa18.29■□□□□ 0.52
SS18-215ENST00000580642 KCNB2Q92953 911 aa18.29■□□□□ 0.52
SS18-215ENST00000580642 STRBPQ96SI9 672 aaKnown RBP18.29■□□□□ 0.52
SS18-215ENST00000580642 SEC62Q99442 399 aaKnown RBP18.29■□□□□ 0.52
SS18-215ENST00000580642 MYH7P12883 1935 aa18.29■□□□□ 0.52
SS18-215ENST00000580642 M0R2C6 588 aa18.28■□□□□ 0.52
SS18-215ENST00000580642 HSPD1P10809 573 aaKnown RBP18.28■□□□□ 0.52
SS18-215ENST00000580642 PLCG2P16885 1265 aa18.28■□□□□ 0.52
SS18-215ENST00000580642 NECTIN1Q15223 517 aa18.28■□□□□ 0.52
SS18-215ENST00000580642 GIMAP6Q6P9H5 292 aa18.28■□□□□ 0.52
SS18-215ENST00000580642 MAST2Q6P0Q8 1798 aa18.27■□□□□ 0.52
SS18-215ENST00000580642 GAKO14976 1311 aa18.27■□□□□ 0.52
SS18-215ENST00000580642 MAGEB6P1A0A0J9YX57 407 aa18.27■□□□□ 0.52
SS18-215ENST00000580642 PATL2C9JE40 543 aaKnown RBP18.27■□□□□ 0.52
SS18-215ENST00000580642 VIL1P09327 827 aaKnown RBP18.27■□□□□ 0.52
SS18-215ENST00000580642 ZKSCAN1P17029 563 aaPredicted RBP18.27■□□□□ 0.52
SS18-215ENST00000580642 TSGA10IPQ3SY00 556 aa18.27■□□□□ 0.52
SS18-215ENST00000580642 HHIPL2Q6UWX4 724 aa18.27■□□□□ 0.52
SS18-215ENST00000580642 ZNF384Q8TF68 577 aa18.27■□□□□ 0.52
SS18-215ENST00000580642 NOL10Q9BSC4 688 aaKnown RBP18.27■□□□□ 0.52
SS18-215ENST00000580642 NACAP1Q9BZK3 213 aa18.27■□□□□ 0.52
SS18-215ENST00000580642 MROH7-TTC4A0A0A0MT08 1334 aa18.26■□□□□ 0.51
SS18-215ENST00000580642 CHGBP05060 677 aa18.26■□□□□ 0.51
SS18-215ENST00000580642 PTH1RQ03431 593 aa18.26■□□□□ 0.51
SS18-215ENST00000580642 RIOK1Q9BRS2 568 aaKnown RBP18.26■□□□□ 0.51
SS18-215ENST00000580642 RBM8AQ9Y5S9 174 aaKnown RBP18.26■□□□□ 0.51
SS18-215ENST00000580642 GPR75-ASB3A0A0A6YYF3 556 aa18.25■□□□□ 0.51
SS18-215ENST00000580642 YDJCA8MPS7 323 aa18.25■□□□□ 0.51
SS18-215ENST00000580642 MBD4O95243 580 aa18.25■□□□□ 0.51
SS18-215ENST00000580642 ANP32AP39687 249 aaKnown RBP18.25■□□□□ 0.51
SS18-215ENST00000580642 KRT32Q14532 448 aa18.25■□□□□ 0.51
SS18-215ENST00000580642 TNIP1Q15025 636 aa18.25■□□□□ 0.51
SS18-215ENST00000580642 CCDC129Q6ZRS4 1044 aa18.25■□□□□ 0.51
SS18-215ENST00000580642 CERS5Q8N5B7 392 aa18.25■□□□□ 0.51
SS18-215ENST00000580642 AGBL3Q8NEM8 1001 aa18.25■□□□□ 0.51
SS18-215ENST00000580642 LMNB1P20700 586 aa18.24■□□□□ 0.51
SS18-215ENST00000580642 SLFNL1Q499Z3 407 aa18.24■□□□□ 0.51
SS18-215ENST00000580642 RSBN1LQ6PCB5 846 aaPredicted RBP18.24■□□□□ 0.51
SS18-215ENST00000580642 CRNKL1Q9BZJ0 848 aaKnown RBP18.24■□□□□ 0.51
SS18-215ENST00000580642 ATP8A2Q9NTI2 1148 aa18.24■□□□□ 0.51
SS18-215ENST00000580642 SERPINA10Q9UK55 444 aa18.24■□□□□ 0.51
SS18-215ENST00000580642 TTF2Q9UNY4 1162 aaKnown RBP18.24■□□□□ 0.51
SS18-215ENST00000580642 JAG2Q9Y219 1238 aa18.24■□□□□ 0.51
SS18-215ENST00000580642 CCDC88AQ3V6T2 1871 aa18.23■□□□□ 0.51
SS18-215ENST00000580642 RPS12P25398 132 aaKnown RBP18.23■□□□□ 0.51
SS18-215ENST00000580642 RABEP1Q15276 862 aa18.23■□□□□ 0.51
SS18-215ENST00000580642 ADGRA1Q86SQ6 560 aa18.23■□□□□ 0.51
SS18-215ENST00000580642 FBXW7Q969H0 707 aa18.23■□□□□ 0.51
SS18-215ENST00000580642 TEKT1Q969V4 418 aa18.23■□□□□ 0.51
SS18-215ENST00000580642 DDRGK1Q96HY6 314 aa18.23■□□□□ 0.51
SS18-215ENST00000580642 TM6SF1Q9BZW5 370 aa18.23■□□□□ 0.51
SS18-215ENST00000580642 FZD9O00144 591 aa18.22■□□□□ 0.51
SS18-215ENST00000580642 NT5C2P49902 561 aa18.22■□□□□ 0.51
SS18-215ENST00000580642 CREB3L3Q68CJ9 461 aa18.22■□□□□ 0.51
SS18-215ENST00000580642 CIAPIN1Q6FI81 312 aa18.22■□□□□ 0.51
SS18-215ENST00000580642 ARHGAP27Q6ZUM4 889 aa18.22■□□□□ 0.51
SS18-215ENST00000580642 LCORLQ8N3X6 602 aa18.22■□□□□ 0.51
SS18-215ENST00000580642 ZDHHC15Q96MV8 337 aa18.22■□□□□ 0.51
SS18-215ENST00000580642 GMLQ99445 158 aa18.22■□□□□ 0.51
SS18-215ENST00000580642 ARMT1Q9H993 441 aa18.22■□□□□ 0.51
SS18-215ENST00000580642 HDAC9Q9UKV0 1011 aa18.22■□□□□ 0.51
SS18-215ENST00000580642 SLC4A4Q9Y6R1 1079 aa18.22■□□□□ 0.51
SS18-215ENST00000580642 SLC27A2O14975 620 aa18.21■□□□□ 0.51
SS18-215ENST00000580642 GRIN3BO60391 1043 aa18.21■□□□□ 0.51
SS18-215ENST00000580642 FGAP02671 866 aa18.21■□□□□ 0.51
SS18-215ENST00000580642 PSMA5P28066 241 aa18.21■□□□□ 0.51
SS18-215ENST00000580642 EIF6P56537 245 aaKnown RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms