RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 IGF2BP3O00425 579 aaKnown RBP eCLIP12.54□□□□□ -0.4
SS18-210ENST00000578700 EN2P19622 333 aaPredicted RBP12.54□□□□□ -0.4
SS18-210ENST00000578700 RBM5P52756 815 aaKnown RBP eCLIP12.54□□□□□ -0.4
SS18-210ENST00000578700 HELBQ8NG08 1087 aaPredicted RBP12.54□□□□□ -0.4
SS18-210ENST00000578700 WNK4Q96J92 1243 aa12.54□□□□□ -0.4
SS18-210ENST00000578700 CFHR5Q9BXR6 569 aa12.54□□□□□ -0.4
SS18-210ENST00000578700 ANKRD2Q9GZV1 360 aa12.54□□□□□ -0.4
SS18-210ENST00000578700 CD209Q9NNX6 404 aa12.54□□□□□ -0.4
SS18-210ENST00000578700 JAG2Q9Y219 1238 aa12.54□□□□□ -0.4
SS18-210ENST00000578700 NEURL1BA8MQ27 555 aa12.53□□□□□ -0.4
SS18-210ENST00000578700 TAF5LO75529 589 aa12.53□□□□□ -0.4
SS18-210ENST00000578700 UBTFL1P0CB47 393 aaPredicted RBP12.53□□□□□ -0.4
SS18-210ENST00000578700 MMP14P50281 582 aa12.53□□□□□ -0.4
SS18-210ENST00000578700 NBPF12Q5TAG4 269 aaPredicted RBP12.53□□□□□ -0.4
SS18-210ENST00000578700 OTUD7BQ6GQQ9 843 aa12.53□□□□□ -0.4
SS18-210ENST00000578700 SMC5Q8IY18 1101 aa12.53□□□□□ -0.4
SS18-210ENST00000578700 ERO1AQ96HE7 468 aa12.53□□□□□ -0.4
SS18-210ENST00000578700 C1orf115Q9H7X2 142 aa12.53□□□□□ -0.4
SS18-210ENST00000578700 EFCC1Q9HA90 598 aa12.53□□□□□ -0.4
SS18-210ENST00000578700 PTPN22Q9Y2R2 807 aa12.53□□□□□ -0.4
SS18-210ENST00000578700 CEP290O15078 2479 aa12.52□□□□□ -0.4
SS18-210ENST00000578700 H7C1W4 665 aa12.52□□□□□ -0.41
SS18-210ENST00000578700 MYO1BO43795 1136 aa12.52□□□□□ -0.41
SS18-210ENST00000578700 MYCP01106 439 aaPredicted RBP12.52□□□□□ -0.41
SS18-210ENST00000578700 CHRNDQ07001 517 aa12.52□□□□□ -0.41
SS18-210ENST00000578700 SUPT20HL1Q3ZLR7 823 aa12.52□□□□□ -0.41
SS18-210ENST00000578700 CFAP100Q494V2 611 aa12.52□□□□□ -0.41
SS18-210ENST00000578700 ANKRD44Q8N8A2 993 aa12.52□□□□□ -0.41
SS18-210ENST00000578700 ZBED3Q96IU2 234 aaPredicted RBP12.52□□□□□ -0.41
SS18-210ENST00000578700 CHMP3Q9Y3E7 222 aa12.52□□□□□ -0.41
SS18-210ENST00000578700 ALDH1L1O75891 902 aa12.51□□□□□ -0.41
SS18-210ENST00000578700 ZBTB48P10074 688 aaPredicted RBP12.51□□□□□ -0.41
SS18-210ENST00000578700 IREB2P48200 963 aaKnown RBP12.51□□□□□ -0.41
SS18-210ENST00000578700 SP3Q02447 781 aa12.51□□□□□ -0.41
SS18-210ENST00000578700 CACNB1Q02641 598 aaPredicted RBP12.51□□□□□ -0.41
SS18-210ENST00000578700 CRHR2Q13324 411 aa12.51□□□□□ -0.41
SS18-210ENST00000578700 CERS5Q8N5B7 392 aa12.51□□□□□ -0.41
SS18-210ENST00000578700 PRMT6Q96LA8 375 aaPredicted RBP12.51□□□□□ -0.41
SS18-210ENST00000578700 MEIS3Q99687 375 aa12.51□□□□□ -0.41
SS18-210ENST00000578700 TMEM106CQ9BVX2 250 aa12.51□□□□□ -0.41
SS18-210ENST00000578700 ANKRD18BA2A2Z9 1011 aa12.5□□□□□ -0.41
SS18-210ENST00000578700 USP2O75604 605 aaPredicted RBP12.5□□□□□ -0.41
SS18-210ENST00000578700 GJA5P36382 358 aa12.5□□□□□ -0.41
SS18-210ENST00000578700 MAP3K11Q16584 847 aa12.5□□□□□ -0.41
SS18-210ENST00000578700 ELP3Q9H9T3 547 aa12.5□□□□□ -0.41
SS18-210ENST00000578700 C9orf78Q9NZ63 289 aaPredicted RBP12.5□□□□□ -0.41
SS18-210ENST00000578700 COL1A1P02452 1464 aaPredicted RBP12.49□□□□□ -0.41
SS18-210ENST00000578700 PDE4AP27815 886 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 NUCB1Q02818 461 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 GCKRQ14397 625 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 RASA3Q14644 834 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 SLC4A8Q2Y0W8 1093 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 BEND3Q5T5X7 828 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 ANKRD45Q5TZF3 282 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 CEP85Q6P2H3 762 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 CHD1LQ86WJ1 897 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 LINS1Q8NG48 757 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 PTPN18Q99952 460 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 RBM19Q9Y4C8 960 aaKnown RBP12.49□□□□□ -0.41
SS18-210ENST00000578700 PPP2R3BQ9Y5P8 575 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 CACNA1FO60840 1977 aa12.49□□□□□ -0.41
SS18-210ENST00000578700 AOX1Q06278 1338 aa12.48□□□□□ -0.41
SS18-210ENST00000578700 SPDYE2BA6NHP3 402 aa12.48□□□□□ -0.41
SS18-210ENST00000578700 ECM2O94769 699 aaPredicted RBP12.48□□□□□ -0.41
SS18-210ENST00000578700 CSF1RP07333 972 aa12.48□□□□□ -0.41
SS18-210ENST00000578700 SPDYE6P0CI01 402 aa12.48□□□□□ -0.41
SS18-210ENST00000578700 ZNF804AQ7Z570 1209 aa12.48□□□□□ -0.41
SS18-210ENST00000578700 ANKRD13AQ8IZ07 590 aa12.48□□□□□ -0.41
SS18-210ENST00000578700 MTMR14Q8NCE2 650 aa12.48□□□□□ -0.41
SS18-210ENST00000578700 OPTNQ96CV9 577 aa12.48□□□□□ -0.41
SS18-210ENST00000578700 SZT2Q5T011 3432 aa12.47□□□□□ -0.41
SS18-210ENST00000578700 CAP1Q01518 475 aa12.47□□□□□ -0.41
SS18-210ENST00000578700 IFIT5Q13325 482 aaKnown RBP12.47□□□□□ -0.41
SS18-210ENST00000578700 TAF7LQ5H9L4 462 aa12.47□□□□□ -0.41
SS18-210ENST00000578700 PLA2G12BQ9BX93 195 aa12.47□□□□□ -0.41
SS18-210ENST00000578700 USP44Q9H0E7 712 aa12.47□□□□□ -0.41
SS18-210ENST00000578700 DCTPP1Q9H773 170 aa12.47□□□□□ -0.41
SS18-210ENST00000578700 TDRD3Q9H7E2 651 aaKnown RBP12.47□□□□□ -0.41
SS18-210ENST00000578700 A0A1B0GUL6 1792 aa12.47□□□□□ -0.41
SS18-210ENST00000578700 TCP10L2B9ZVM9 353 aa12.46□□□□□ -0.41
SS18-210ENST00000578700 CASP7P55210 303 aa12.46□□□□□ -0.41
SS18-210ENST00000578700 TAF1CQ15572 869 aaPredicted RBP12.46□□□□□ -0.41
SS18-210ENST00000578700 SLC9C1Q4G0N8 1177 aa12.46□□□□□ -0.41
SS18-210ENST00000578700 NBPF11Q86T75 865 aa12.46□□□□□ -0.41
SS18-210ENST00000578700 ARMC5Q96C12 935 aa12.46□□□□□ -0.41
SS18-210ENST00000578700 ZNF594Q96JF6 807 aaPredicted RBP12.46□□□□□ -0.41
SS18-210ENST00000578700 ZFYVE28Q9HCC9 887 aa12.46□□□□□ -0.41
SS18-210ENST00000578700 COLQQ9Y215 455 aaPredicted RBP12.46□□□□□ -0.41
SS18-210ENST00000578700 LRRFIP2Q9Y608 721 aaKnown RBP12.46□□□□□ -0.41
SS18-210ENST00000578700 SSC5DA1L4H1 1573 aa12.46□□□□□ -0.42
SS18-210ENST00000578700 CCL15-CCL14A0A0B4J2E2 113 aa12.45□□□□□ -0.42
SS18-210ENST00000578700 UNCXA6NJT0 531 aa12.45□□□□□ -0.42
SS18-210ENST00000578700 IL1R1P14778 569 aa12.45□□□□□ -0.42
SS18-210ENST00000578700 FXR1P51114 621 aaKnown RBP eCLIP12.45□□□□□ -0.42
SS18-210ENST00000578700 ATP8B2P98198 1209 aa12.45□□□□□ -0.42
SS18-210ENST00000578700 ARHGEF6Q15052 776 aa12.45□□□□□ -0.42
SS18-210ENST00000578700 CCL15Q16663 113 aa12.45□□□□□ -0.42
SS18-210ENST00000578700 SKAP1Q86WV1 359 aa12.45□□□□□ -0.42
SS18-210ENST00000578700 SIRT2Q8IXJ6 389 aa12.45□□□□□ -0.42
SS18-210ENST00000578700 BACH2Q9BYV9 841 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms