RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 TSGA10Q9BZW7 698 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 GUCA1BQ9UMX6 200 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 MRVI1Q9Y6F6 885 aa11.77□□□□□ -0.53
PTPRM-205ENST00000577827 RNMTO43148 476 aaKnown RBP11.76□□□□□ -0.53
PTPRM-205ENST00000577827 ATP5JP18859 108 aa11.76□□□□□ -0.53
PTPRM-205ENST00000577827 CHST3Q7LGC8 479 aa11.76□□□□□ -0.53
PTPRM-205ENST00000577827 OTUD6BQ8N6M0 293 aa11.76□□□□□ -0.53
PTPRM-205ENST00000577827 IP6K1Q92551 441 aa11.76□□□□□ -0.53
PTPRM-205ENST00000577827 BCCIPQ9P287 314 aaKnown RBP eCLIP11.76□□□□□ -0.53
PTPRM-205ENST00000577827 RBM6P78332 1123 aaKnown RBP11.76□□□□□ -0.53
PTPRM-205ENST00000577827 FCHSD1Q86WN1 690 aa11.76□□□□□ -0.53
PTPRM-205ENST00000577827 AFAP1L1Q8TED9 768 aa11.76□□□□□ -0.53
PTPRM-205ENST00000577827 ZNF274Q96GC6 653 aaPredicted RBP11.76□□□□□ -0.53
PTPRM-205ENST00000577827 GPATCH11Q8N954 259 aa11.76□□□□□ -0.53
PTPRM-205ENST00000577827 JARID2Q92833 1246 aaPredicted RBP11.76□□□□□ -0.53
PTPRM-205ENST00000577827 TPCN1Q9ULQ1 816 aa11.76□□□□□ -0.53
PTPRM-205ENST00000577827 JAK2O60674 1132 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 IDEP14735 1019 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 CYP26C1Q6V0L0 522 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 SELENOOQ9BVL4 669 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 KAT14Q9H8E8 782 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 ANGEL1Q9UNK9 670 aaKnown RBP11.75□□□□□ -0.53
PTPRM-205ENST00000577827 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.75□□□□□ -0.53
PTPRM-205ENST00000577827 OAS2P29728 719 aaKnown RBP11.75□□□□□ -0.53
PTPRM-205ENST00000577827 GBP2P32456 591 aaPredicted RBP11.75□□□□□ -0.53
PTPRM-205ENST00000577827 KRT2P35908 639 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 UBXN1Q04323 297 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 METTL22Q9BUU2 404 aaPredicted RBP11.75□□□□□ -0.53
PTPRM-205ENST00000577827 TMCO5BA8MYB1 307 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 PHACTR2O75167 634 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 ATP2B2Q01814 1243 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 IFIT1BQ5T764 474 aaKnown RBP11.75□□□□□ -0.53
PTPRM-205ENST00000577827 B4GALNT4Q76KP1 1039 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 PPM1EQ8WY54 764 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 CCDC51Q96ER9 411 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 MYO5CQ9NQX4 1742 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 PFKFB2O60825 505 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 DNA2P51530 1060 aa11.75□□□□□ -0.53
PTPRM-205ENST00000577827 IRX3P78415 501 aaPredicted RBP11.75□□□□□ -0.53
PTPRM-205ENST00000577827 DNAJC21Q5F1R6 531 aaKnown RBP11.75□□□□□ -0.53
PTPRM-205ENST00000577827 CDC5LQ99459 802 aaKnown RBP11.75□□□□□ -0.53
PTPRM-205ENST00000577827 A0A1W2PQ27 194 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 A0A1W2PQ64 194 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 A0A1W2PQD8 194 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 TSPY2A6NKD2 308 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 PTH1RQ03431 593 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 ERCC6LQ2NKX8 1250 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 RPGRIP1Q96KN7 1286 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 CCDC113Q9H0I3 377 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 NFE2L3Q9Y4A8 694 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 PLEKHG3A1L390 1219 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 NF2P35240 595 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 NOP2P46087 812 aaKnown RBP11.74□□□□□ -0.53
PTPRM-205ENST00000577827 STX17P56962 302 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 CCDC122Q5T0U0 273 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 DZIP1Q86YF9 867 aaKnown RBP11.74□□□□□ -0.53
PTPRM-205ENST00000577827 APPBP2Q92624 585 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 MAP4K1Q92918 833 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 PLCD4Q9BRC7 762 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 CPSF1Q10570 1443 aaKnown RBP11.74□□□□□ -0.53
PTPRM-205ENST00000577827 ATP7BP35670 1465 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 EYA2O00167 538 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 MYSM1Q5VVJ2 828 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 KRT28Q7Z3Y7 464 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 ATRIPQ8WXE1 791 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 DBNDD2Q9BQY9 259 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 SLC4A4Q9Y6R1 1079 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 POTEDQ86YR6 584 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 CHAMP1Q96JM3 812 aa11.74□□□□□ -0.53
PTPRM-205ENST00000577827 NSRP1Q9H0G5 558 aaKnown RBP11.74□□□□□ -0.53
PTPRM-205ENST00000577827 DEXIO95424 95 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 CCDC172P0C7W6 258 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 ZSCAN26Q16670 478 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 WWC2Q6AWC2 1192 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 ZFP91Q96JP5 570 aaPredicted RBP11.73□□□□□ -0.53
PTPRM-205ENST00000577827 NCOA5Q9HCD5 579 aaKnown RBP11.73□□□□□ -0.53
PTPRM-205ENST00000577827 GOPCQ9HD26 462 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 POLR1AO95602 1720 aaPredicted RBP11.73□□□□□ -0.53
PTPRM-205ENST00000577827 SLC39A6Q13433 755 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 CCDC91Q7Z6B0 441 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 IQGAP3Q86VI3 1631 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 CETN1Q12798 172 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 PPP2R5BQ15173 497 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 CCDC129Q6ZRS4 1044 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 CCDC121Q6ZUS5 278 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 RASEFQ8IZ41 740 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 USP28Q96RU2 1077 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 CRNKL1Q9BZJ0 848 aaKnown RBP11.73□□□□□ -0.53
PTPRM-205ENST00000577827 SPTLC3Q9NUV7 552 aa11.73□□□□□ -0.53
PTPRM-205ENST00000577827 POTEJP0CG39 1038 aa11.72□□□□□ -0.53
PTPRM-205ENST00000577827 EZRP15311 586 aaKnown RBP11.72□□□□□ -0.53
PTPRM-205ENST00000577827 CMA1P23946 247 aa11.72□□□□□ -0.53
PTPRM-205ENST00000577827 EIF4A1P60842 406 aaKnown RBP11.72□□□□□ -0.53
PTPRM-205ENST00000577827 LMBR1Q8WVP7 490 aa11.72□□□□□ -0.53
PTPRM-205ENST00000577827 SUCLG2Q96I99 432 aa11.72□□□□□ -0.53
PTPRM-205ENST00000577827 PREX2Q70Z35 1606 aa11.72□□□□□ -0.53
PTPRM-205ENST00000577827 LDHCP07864 332 aa11.72□□□□□ -0.53
PTPRM-205ENST00000577827 ZNF76P36508 570 aa11.72□□□□□ -0.53
PTPRM-205ENST00000577827 CCDC155Q8N6L0 562 aa11.72□□□□□ -0.53
PTPRM-205ENST00000577827 IPO4Q8TEX9 1081 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms