RNA–Protein interactions for RNA: ENST00000574408.5

USP43-205, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 3,425 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-205ENST00000574408 KRT85P78386 507 aa12.33□□□□□ -0.44
USP43-205ENST00000574408 TRDNQ13061 729 aa12.33□□□□□ -0.44
USP43-205ENST00000574408 SMARCC2Q8TAQ2 1214 aa12.33□□□□□ -0.44
USP43-205ENST00000574408 TAF1P21675 1872 aa12.32□□□□□ -0.44
USP43-205ENST00000574408 TBC1D10CQ8IV04 446 aa12.32□□□□□ -0.44
USP43-205ENST00000574408 ZNF274Q96GC6 653 aaPredicted RBP12.32□□□□□ -0.44
USP43-205ENST00000574408 ARMT1Q9H993 441 aa12.32□□□□□ -0.44
USP43-205ENST00000574408 TRPC5Q9UL62 973 aaPredicted RBP12.32□□□□□ -0.44
USP43-205ENST00000574408 MINPP1Q9UNW1 487 aa12.32□□□□□ -0.44
USP43-205ENST00000574408 CTDNEP1O95476 244 aa12.32□□□□□ -0.44
USP43-205ENST00000574408 ANTXR2P58335 489 aa12.32□□□□□ -0.44
USP43-205ENST00000574408 LRSAM1Q6UWE0 723 aa12.32□□□□□ -0.44
USP43-205ENST00000574408 TPTE2Q6XPS3 522 aa12.32□□□□□ -0.44
USP43-205ENST00000574408 NBPF3Q9H094 633 aa12.32□□□□□ -0.44
USP43-205ENST00000574408 DENND2AQ9ULE3 1009 aa12.32□□□□□ -0.44
USP43-205ENST00000574408 RFC4P35249 363 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 PLCB2Q00722 1185 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 UBE4AQ14139 1066 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 VPS37DQ86XT2 251 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 GNL3LQ9NVN8 582 aaKnown RBP12.31□□□□□ -0.44
USP43-205ENST00000574408 FAM13BQ9NYF5 915 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 ABCF2Q9UG63 623 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 RPS8P62241 208 aaKnown RBP12.31□□□□□ -0.44
USP43-205ENST00000574408 HMGN5P82970 282 aaKnown RBP12.31□□□□□ -0.44
USP43-205ENST00000574408 FAM196AQ6ZSG2 479 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 RBSNQ9H1K0 784 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 KLF18A0A0U1RQI7 1052 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 RAB11FIP4Q86YS3 637 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 NAPBQ9H115 298 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 KIF3AQ9Y496 699 aa12.31□□□□□ -0.44
USP43-205ENST00000574408 GOLGA8BA8MQT2 603 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 TRAPPC3LQ5T215 181 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 FBXL16Q8N461 479 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 MIGA1Q8NAN2 632 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 EPB41L4AQ9HCS5 686 aaPredicted RBP12.3□□□□□ -0.44
USP43-205ENST00000574408 ZNF804BA4D1E1 1349 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 CAVIN4Q5BKX8 364 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 TTC6Q86TZ1 520 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 PODXL2Q9NZ53 605 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 TFIP11Q9UBB9 837 aaKnown RBP12.3□□□□□ -0.44
USP43-205ENST00000574408 PATL2C9JE40 543 aaKnown RBP12.3□□□□□ -0.44
USP43-205ENST00000574408 PRKAB2O43741 272 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 IFNL3Q8IZI9 196 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 LCORLQ8N3X6 602 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 RAI14Q9P0K7 980 aa12.3□□□□□ -0.44
USP43-205ENST00000574408 B4E1Z4 1266 aa12.29□□□□□ -0.44
USP43-205ENST00000574408 ONECUT3O60422 494 aaPredicted RBP12.29□□□□□ -0.44
USP43-205ENST00000574408 CYP7A1P22680 504 aa12.29□□□□□ -0.44
USP43-205ENST00000574408 EVCP57679 992 aa12.29□□□□□ -0.44
USP43-205ENST00000574408 RESTQ13127 1097 aa12.29□□□□□ -0.44
USP43-205ENST00000574408 ALX1Q15699 326 aa12.29□□□□□ -0.44
USP43-205ENST00000574408 DNTTIP2Q5QJE6 756 aaKnown RBP12.29□□□□□ -0.44
USP43-205ENST00000574408 CCDC183Q5T5S1 534 aa12.29□□□□□ -0.44
USP43-205ENST00000574408 NKX2-3Q8TAU0 364 aa12.29□□□□□ -0.44
USP43-205ENST00000574408 CHMP4CQ96CF2 233 aa12.29□□□□□ -0.44
USP43-205ENST00000574408 BCL11BQ9C0K0 894 aaPredicted RBP12.29□□□□□ -0.44
USP43-205ENST00000574408 LRRC4BQ9NT99 713 aa12.29□□□□□ -0.44
USP43-205ENST00000574408 SLC4A4Q9Y6R1 1079 aa12.29□□□□□ -0.44
USP43-205ENST00000574408 TDO2P48775 406 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 CYB5R4Q7L1T6 521 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 FAM84BQ96KN1 310 aaPredicted RBP12.28□□□□□ -0.44
USP43-205ENST00000574408 NEDD4P46934 1319 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 GSG1L2A8MUP6 293 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 KLRK1P26718 216 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 SCAND2PQ9GZW5 306 aaPredicted RBP12.28□□□□□ -0.44
USP43-205ENST00000574408 QTRT2Q9H974 415 aaKnown RBP12.28□□□□□ -0.44
USP43-205ENST00000574408 INCENPQ9NQS7 918 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 DOCK2Q92608 1830 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 WDR19Q8NEZ3 1342 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 SALL1Q9NSC2 1324 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 GUCY1B3Q02153 619 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 CTDSPL2Q05D32 466 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 RNF214Q8ND24 703 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 SPATA32Q96LK8 384 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 NACAP1Q9BZK3 213 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 ANGEL1Q9UNK9 670 aaKnown RBP12.28□□□□□ -0.44
USP43-205ENST00000574408 HPS5Q9UPZ3 1129 aa12.28□□□□□ -0.44
USP43-205ENST00000574408 CPLX1O14810 134 aa12.27□□□□□ -0.44
USP43-205ENST00000574408 NFIXQ14938 502 aa12.27□□□□□ -0.44
USP43-205ENST00000574408 NAA16Q6N069 864 aaPredicted RBP12.27□□□□□ -0.44
USP43-205ENST00000574408 TSPY26PQ9H489 355 aa12.27□□□□□ -0.44
USP43-205ENST00000574408 COL1A1P02452 1464 aaPredicted RBP12.27□□□□□ -0.44
USP43-205ENST00000574408 DHX16O60231 1041 aaKnown RBP12.27□□□□□ -0.45
USP43-205ENST00000574408 GNAT2P19087 354 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 ADGRA1Q86SQ6 560 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 ZSCAN16Q9H4T2 348 aaPredicted RBP12.27□□□□□ -0.45
USP43-205ENST00000574408 TFCP2L1Q9NZI6 479 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 ZMYM6O95789 1325 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 PNPLA7Q6ZV29 1317 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 CARMIL3Q8ND23 1372 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 LY75O60449 1722 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 C4BP0C0L5 1744 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 COL24A1Q17RW2 1714 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.27□□□□□ -0.45
USP43-205ENST00000574408 GOLGA6L4A6NEF3 574 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 LEO1Q8WVC0 666 aaPredicted RBP12.27□□□□□ -0.45
USP43-205ENST00000574408 TOMM22Q9NS69 142 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 ELP1O95163 1332 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 SBF2Q86WG5 1849 aa12.27□□□□□ -0.45
USP43-205ENST00000574408 TAF1LQ8IZX4 1826 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms