RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 FOXO4P98177 505 aa11.82□□□□□ -0.52
SMG6-213ENST00000573166 MAPKAPK5Q8IW41 473 aa11.82□□□□□ -0.52
SMG6-213ENST00000573166 PRC1O43663 620 aa11.82□□□□□ -0.52
SMG6-213ENST00000573166 RAD17O75943 681 aa11.82□□□□□ -0.52
SMG6-213ENST00000573166 STK38Q15208 465 aa11.82□□□□□ -0.52
SMG6-213ENST00000573166 CERS3Q8IU89 383 aa11.82□□□□□ -0.52
SMG6-213ENST00000573166 TMTC2Q8N394 836 aa11.82□□□□□ -0.52
SMG6-213ENST00000573166 PLSCR1O15162 318 aa11.82□□□□□ -0.52
SMG6-213ENST00000573166 METAP2P50579 478 aaKnown RBP eCLIP11.82□□□□□ -0.52
SMG6-213ENST00000573166 GRM1Q13255 1194 aa11.82□□□□□ -0.52
SMG6-213ENST00000573166 FERMT3Q86UX7 667 aa11.82□□□□□ -0.52
SMG6-213ENST00000573166 GOLGA6L6A8MZA4 724 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 GYS1P13807 737 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 GSPT1P15170 499 aaKnown RBP11.81□□□□□ -0.52
SMG6-213ENST00000573166 TGFBRAP1Q8WUH2 860 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 ZNF396Q96N95 335 aaPredicted RBP11.81□□□□□ -0.52
SMG6-213ENST00000573166 USP40Q9NVE5 1235 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 A0A0G2JLW4 131 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 PRDM1O75626 825 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 NTSR2O95665 410 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 STAP2Q9UGK3 403 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 SEMA3EO15041 775 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 ZBTB43O43298 467 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 CCDC178Q5BJE1 867 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 TAOK3Q9H2K8 898 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 IARSP41252 1262 aaKnown RBP11.81□□□□□ -0.52
SMG6-213ENST00000573166 HMGN5P82970 282 aaKnown RBP11.81□□□□□ -0.52
SMG6-213ENST00000573166 TNIP1Q15025 636 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 DRC7Q8IY82 874 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 SLC4A9Q96Q91 983 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 SEC62Q99442 399 aaKnown RBP11.81□□□□□ -0.52
SMG6-213ENST00000573166 ZNF408Q9H9D4 720 aa11.81□□□□□ -0.52
SMG6-213ENST00000573166 GUCY1B3Q02153 619 aa11.8□□□□□ -0.52
SMG6-213ENST00000573166 SKOR2Q2VWA4 1001 aaPredicted RBP11.8□□□□□ -0.52
SMG6-213ENST00000573166 Q6ZUG5 572 aa11.8□□□□□ -0.52
SMG6-213ENST00000573166 C8orf76Q96K31 380 aa11.8□□□□□ -0.52
SMG6-213ENST00000573166 USP26Q9BXU7 913 aa11.8□□□□□ -0.52
SMG6-213ENST00000573166 SF3B3Q15393 1217 aaKnown RBP11.8□□□□□ -0.52
SMG6-213ENST00000573166 EAPPQ56P03 285 aaPredicted RBP11.8□□□□□ -0.52
SMG6-213ENST00000573166 PPP4R3BQ5MIZ7 849 aa11.8□□□□□ -0.52
SMG6-213ENST00000573166 HOMER1Q86YM7 354 aa11.8□□□□□ -0.52
SMG6-213ENST00000573166 TBC1D2Q9BYX2 928 aa11.8□□□□□ -0.52
SMG6-213ENST00000573166 ANTXR1Q9H6X2 564 aa11.8□□□□□ -0.52
SMG6-213ENST00000573166 NOL7Q9UMY1 257 aaKnown RBP11.8□□□□□ -0.52
SMG6-213ENST00000573166 SSRP1Q08945 709 aaKnown RBP11.8□□□□□ -0.52
SMG6-213ENST00000573166 RABL6Q3YEC7 729 aaPredicted RBP11.8□□□□□ -0.52
SMG6-213ENST00000573166 A0A0D9SFI3 127 aa11.79□□□□□ -0.52
SMG6-213ENST00000573166 PLEKHG2Q9H7P9 1386 aa11.79□□□□□ -0.52
SMG6-213ENST00000573166 NRDCO43847 1150 aa11.79□□□□□ -0.52
SMG6-213ENST00000573166 TPM4P67936 248 aa11.79□□□□□ -0.52
SMG6-213ENST00000573166 RASGRF1Q13972 1273 aa11.79□□□□□ -0.52
SMG6-213ENST00000573166 DHX32Q7L7V1 743 aaKnown RBP11.79□□□□□ -0.52
SMG6-213ENST00000573166 NECAB1Q8N987 351 aa11.79□□□□□ -0.52
SMG6-213ENST00000573166 ZKSCAN3Q9BRR0 538 aa11.79□□□□□ -0.52
SMG6-213ENST00000573166 PLA2G12BQ9BX93 195 aa11.79□□□□□ -0.52
SMG6-213ENST00000573166 ORC3Q9UBD5 711 aaPredicted RBP11.79□□□□□ -0.52
SMG6-213ENST00000573166 B4E1Z4 1266 aa11.79□□□□□ -0.52
SMG6-213ENST00000573166 DNTTIP2Q5QJE6 756 aaKnown RBP11.79□□□□□ -0.52
SMG6-213ENST00000573166 JMYQ8N9B5 988 aa11.79□□□□□ -0.52
SMG6-213ENST00000573166 CCDC47Q96A33 483 aaKnown RBP11.79□□□□□ -0.52
SMG6-213ENST00000573166 COA1Q9GZY4 146 aa11.79□□□□□ -0.52
SMG6-213ENST00000573166 USP17L12C9JPN9 530 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 USP17L21D6R901 530 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 ZNF76P36508 570 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 KRT85P78386 507 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 PRKG1Q13976 671 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 RAB3GAP1Q15042 981 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 SDF4Q9BRK5 362 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 HOOK1Q9UJC3 728 aaKnown RBP11.78□□□□□ -0.52
SMG6-213ENST00000573166 UBN2Q6ZU65 1347 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 SLC26A6Q9BXS9 759 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 CPA1P15085 419 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 BTDP43251 543 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 SDR42E1Q8WUS8 393 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 AKAP12Q02952 1782 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 ME1P48163 572 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 OSBPL3Q9H4L5 887 aa11.78□□□□□ -0.52
SMG6-213ENST00000573166 NLRP5P59047 1200 aa11.77□□□□□ -0.52
SMG6-213ENST00000573166 UBE3CQ15386 1083 aa11.77□□□□□ -0.52
SMG6-213ENST00000573166 RTN1Q16799 776 aa11.77□□□□□ -0.52
SMG6-213ENST00000573166 TPD52L1Q16890 204 aaPredicted RBP11.77□□□□□ -0.52
SMG6-213ENST00000573166 CRAMP1Q96RY5 1269 aa11.77□□□□□ -0.52
SMG6-213ENST00000573166 GOLGA6L3A6NEY3 463 aa11.77□□□□□ -0.53
SMG6-213ENST00000573166 SLC27A2O14975 620 aa11.77□□□□□ -0.53
SMG6-213ENST00000573166 PDIA4P13667 645 aaKnown RBP11.77□□□□□ -0.53
SMG6-213ENST00000573166 TNFAIP1Q13829 316 aa11.77□□□□□ -0.53
SMG6-213ENST00000573166 SP8Q8IXZ3 490 aa11.77□□□□□ -0.53
SMG6-213ENST00000573166 PATL2C9JE40 543 aaKnown RBP11.77□□□□□ -0.53
SMG6-213ENST00000573166 CSF1RP07333 972 aa11.77□□□□□ -0.53
SMG6-213ENST00000573166 TXLNAP40222 546 aa11.77□□□□□ -0.53
SMG6-213ENST00000573166 CDK5RAP3Q96JB5 506 aa11.77□□□□□ -0.53
SMG6-213ENST00000573166 TMX3Q96JJ7 454 aa11.77□□□□□ -0.53
SMG6-213ENST00000573166 LRRC4BQ9NT99 713 aa11.77□□□□□ -0.53
SMG6-213ENST00000573166 USP17L3A6NCW0 530 aa11.76□□□□□ -0.53
SMG6-213ENST00000573166 USP17L4A6NCW7 530 aa11.76□□□□□ -0.53
SMG6-213ENST00000573166 PRPF40AO75400 957 aaKnown RBP11.76□□□□□ -0.53
SMG6-213ENST00000573166 CTDSPL2Q05D32 466 aa11.76□□□□□ -0.53
SMG6-213ENST00000573166 CIAPIN1Q6FI81 312 aa11.76□□□□□ -0.53
SMG6-213ENST00000573166 USP17L1Q7RTZ2 530 aa11.76□□□□□ -0.53
SMG6-213ENST00000573166 RIPOR2Q9Y4F9 1068 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms