RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 RPGRIP1LQ68CZ1 1315 aa8.33□□□□□ -1.08
VPS53-212ENST00000572259 TOM1O60784 492 aa8.33□□□□□ -1.08
VPS53-212ENST00000572259 PHACTR2O75167 634 aa8.33□□□□□ -1.08
VPS53-212ENST00000572259 TNFRSF21O75509 655 aa8.33□□□□□ -1.08
VPS53-212ENST00000572259 NFKB1P19838 968 aa8.33□□□□□ -1.08
VPS53-212ENST00000572259 ATP2B2Q01814 1243 aa8.33□□□□□ -1.08
VPS53-212ENST00000572259 GRIN2CQ14957 1233 aa8.33□□□□□ -1.08
VPS53-212ENST00000572259 TAF7LQ5H9L4 462 aa8.33□□□□□ -1.08
VPS53-212ENST00000572259 RAB44Q7Z6P3 723 aaPredicted RBP8.33□□□□□ -1.08
VPS53-212ENST00000572259 SNX29Q8TEQ0 813 aa8.33□□□□□ -1.08
VPS53-212ENST00000572259 PMEPA1Q969W9 287 aa8.33□□□□□ -1.08
VPS53-212ENST00000572259 ABI2Q9NYB9 513 aaPredicted RBP8.33□□□□□ -1.08
VPS53-212ENST00000572259 RAB3GAP2Q9H2M9 1393 aa8.33□□□□□ -1.08
VPS53-212ENST00000572259 LTBP4Q8N2S1 1624 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 CPNE3O75131 537 aaKnown RBP8.32□□□□□ -1.08
VPS53-212ENST00000572259 IGHA2P01877 340 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 P4HBP07237 508 aaKnown RBP8.32□□□□□ -1.08
VPS53-212ENST00000572259 KCNA6P17658 529 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 FGD1P98174 961 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 FMR1Q06787 632 aaKnown RBP eCLIP8.32□□□□□ -1.088e-8■■■■■ 27.8
VPS53-212ENST00000572259 GIPC2Q8TF65 315 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 SLC26A8Q96RN1 970 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 CSRNP1Q96S65 589 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 BCL11AQ9H165 835 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 FOXD3Q9UJU5 478 aaPredicted RBP8.32□□□□□ -1.08
VPS53-212ENST00000572259 HCN2Q9UL51 889 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 TBX22Q9Y458 520 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 TRPM2O94759 1503 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 PLEKHG1Q9ULL1 1385 aa8.32□□□□□ -1.08
VPS53-212ENST00000572259 CCDC144AA2RUR9 1427 aa8.31□□□□□ -1.08
VPS53-212ENST00000572259 ORC1Q13415 861 aa8.31□□□□□ -1.08
VPS53-212ENST00000572259 GPR161Q8N6U8 529 aaKnown RBP8.31□□□□□ -1.08
VPS53-212ENST00000572259 IGFLR1Q9H665 355 aa8.31□□□□□ -1.08
VPS53-212ENST00000572259 ZFYVE9O95405 1425 aa8.3□□□□□ -1.08
VPS53-212ENST00000572259 PNMA6FA0A0J9YX94 578 aa8.3□□□□□ -1.08
VPS53-212ENST00000572259 PHF20L1A8MW92 1017 aa8.3□□□□□ -1.08
VPS53-212ENST00000572259 EIF1AYO14602 144 aaKnown RBP8.3□□□□□ -1.08
VPS53-212ENST00000572259 LDHBP07195 334 aaKnown RBP8.3□□□□□ -1.08
VPS53-212ENST00000572259 PSAPP07602 524 aa8.3□□□□□ -1.08
VPS53-212ENST00000572259 CES1P23141 567 aa8.3□□□□□ -1.08
VPS53-212ENST00000572259 NOL8Q76FK4 1167 aaKnown RBP8.3□□□□□ -1.08
VPS53-212ENST00000572259 C1orf127Q8N9H9 656 aa8.3□□□□□ -1.08
VPS53-212ENST00000572259 IRF7Q92985 503 aa8.3□□□□□ -1.08
VPS53-212ENST00000572259 DNAJC25Q9H1X3 360 aa8.3□□□□□ -1.08
VPS53-212ENST00000572259 ZFYVE28Q9HCC9 887 aa8.3□□□□□ -1.08
VPS53-212ENST00000572259 MBIPQ9NS73 344 aa8.3□□□□□ -1.08
VPS53-212ENST00000572259 MMP20O60882 483 aa8.29□□□□□ -1.08
VPS53-212ENST00000572259 MAP2K3P46734 347 aa8.29□□□□□ -1.08
VPS53-212ENST00000572259 RGL3Q3MIN7 710 aa8.29□□□□□ -1.08
VPS53-212ENST00000572259 NAALADL2Q58DX5 795 aa8.29□□□□□ -1.08
VPS53-212ENST00000572259 SYT9Q86SS6 491 aa8.29□□□□□ -1.08
VPS53-212ENST00000572259 COL25A1Q9BXS0 654 aaPredicted RBP8.29□□□□□ -1.08
VPS53-212ENST00000572259 CNTN3Q9P232 1028 aa8.29□□□□□ -1.08
VPS53-212ENST00000572259 ZFATQ9P243 1243 aa8.29□□□□□ -1.08
VPS53-212ENST00000572259 PIK3R4Q99570 1358 aa8.29□□□□□ -1.08
VPS53-212ENST00000572259 CLTCL1P53675 1640 aa8.29□□□□□ -1.08
VPS53-212ENST00000572259 C2CD2LO14523 706 aa8.28□□□□□ -1.08
VPS53-212ENST00000572259 MAP3K6O95382 1288 aa8.28□□□□□ -1.08
VPS53-212ENST00000572259 TBC1D8BQ0IIM8 1120 aa8.28□□□□□ -1.08
VPS53-212ENST00000572259 GAS6Q14393 721 aa8.28□□□□□ -1.08
VPS53-212ENST00000572259 ENOX2Q16206 610 aaKnown RBP8.28□□□□□ -1.08
VPS53-212ENST00000572259 ZNF468Q5VIY5 522 aaPredicted RBP8.28□□□□□ -1.08
VPS53-212ENST00000572259 ALG1LQ6GMV1 187 aa8.28□□□□□ -1.08
VPS53-212ENST00000572259 DHX32Q7L7V1 743 aaKnown RBP8.28□□□□□ -1.08
VPS53-212ENST00000572259 FBXO33Q7Z6M2 555 aa8.28□□□□□ -1.08
VPS53-212ENST00000572259 TICAM2Q86XR7 235 aa8.28□□□□□ -1.08
VPS53-212ENST00000572259 OR13H1Q8NG92 308 aa8.28□□□□□ -1.08
VPS53-212ENST00000572259 TLR7Q9NYK1 1049 aaKnown RBP8.28□□□□□ -1.08
VPS53-212ENST00000572259 PPP1R1BQ9UD71 204 aaPredicted RBP8.28□□□□□ -1.08
VPS53-212ENST00000572259 DIP2AQ14689 1571 aa8.27□□□□□ -1.09
VPS53-212ENST00000572259 CHD2O14647 1828 aaKnown RBP8.27□□□□□ -1.09
VPS53-212ENST00000572259 CLSTN1O94985 981 aa8.27□□□□□ -1.09
VPS53-212ENST00000572259 VSIG8P0DPA2 414 aa8.27□□□□□ -1.09
VPS53-212ENST00000572259 PCBP4P57723 403 aaKnown RBP8.27□□□□□ -1.09
VPS53-212ENST00000572259 PLAURQ03405 335 aa8.27□□□□□ -1.09
VPS53-212ENST00000572259 NFX1Q12986 1120 aaKnown RBP8.27□□□□□ -1.09
VPS53-212ENST00000572259 LCE2AQ5TA79 106 aaPredicted RBP8.27□□□□□ -1.09
VPS53-212ENST00000572259 UBE2OQ9C0C9 1292 aaKnown RBP8.27□□□□□ -1.09
VPS53-212ENST00000572259 ANKRD30BQ9BXX2 1392 aa8.26□□□□□ -1.09
VPS53-212ENST00000572259 PRPF40AO75400 957 aaKnown RBP8.26□□□□□ -1.09
VPS53-212ENST00000572259 POLR3DP05423 398 aaPredicted RBP8.26□□□□□ -1.09
VPS53-212ENST00000572259 XPCQ01831 940 aaPredicted RBP8.26□□□□□ -1.09
VPS53-212ENST00000572259 HYAL2Q12891 473 aa8.26□□□□□ -1.09
VPS53-212ENST00000572259 PCSK7Q16549 785 aa8.26□□□□□ -1.09
VPS53-212ENST00000572259 USPL1Q5W0Q7 1092 aa8.26□□□□□ -1.09
VPS53-212ENST00000572259 AVENQ9NQS1 362 aaPredicted RBP8.26□□□□□ -1.09
VPS53-212ENST00000572259 WWC3Q9ULE0 1092 aa8.26□□□□□ -1.09
VPS53-212ENST00000572259 ERBB4Q15303 1308 aa8.26□□□□□ -1.09
VPS53-212ENST00000572259 LRRC7Q96NW7 1537 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 EREGO14944 169 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 SIN3BO75182 1162 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 CYP2E1P05181 493 aaPredicted RBP8.25□□□□□ -1.09
VPS53-212ENST00000572259 ARAFP10398 606 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 ADH6P28332 368 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 SOX18P35713 384 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 PIP4K2BP78356 416 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 TAGLNQ01995 201 aaKnown RBP8.25□□□□□ -1.09
VPS53-212ENST00000572259 NCAPG2Q86XI2 1143 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 CCDC74AQ96AQ1 378 aa8.25□□□□□ -1.09
VPS53-212ENST00000572259 SPACA7Q96KW9 195 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms