RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 SUCLG2Q96I99 432 aa24.34■■□□□ 1.49
NUP88-203ENST00000572019 IQSEC3Q9UPP2 1182 aaPredicted RBP24.34■■□□□ 1.49
NUP88-203ENST00000572019 DZIP1LQ8IYY4 767 aaKnown RBP24.33■■□□□ 1.49
NUP88-203ENST00000572019 ARMC5Q96C12 935 aa24.33■■□□□ 1.49
NUP88-203ENST00000572019 EFCC1Q9HA90 598 aa24.33■■□□□ 1.49
NUP88-203ENST00000572019 SP3Q02447 781 aa24.32■■□□□ 1.48
NUP88-203ENST00000572019 VGLL4Q14135 290 aa24.32■■□□□ 1.48
NUP88-203ENST00000572019 WDR63Q8IWG1 891 aa24.32■■□□□ 1.48
NUP88-203ENST00000572019 SERPINA10Q9UK55 444 aa24.32■■□□□ 1.48
NUP88-203ENST00000572019 HIBADHP31937 336 aaKnown RBP24.31■■□□□ 1.48
NUP88-203ENST00000572019 CRKP46108 304 aa24.31■■□□□ 1.48
NUP88-203ENST00000572019 CACNB3P54284 484 aa24.31■■□□□ 1.48
NUP88-203ENST00000572019 UBE4AQ14139 1066 aa24.31■■□□□ 1.48
NUP88-203ENST00000572019 NCBP3Q53F19 620 aaKnown RBP24.31■■□□□ 1.48
NUP88-203ENST00000572019 NBPF7P0C2Y1 421 aaPredicted RBP24.3■■□□□ 1.48
NUP88-203ENST00000572019 INTS3Q68E01 1043 aaKnown RBP24.3■■□□□ 1.48
NUP88-203ENST00000572019 SLC4A10Q6U841 1118 aa24.3■■□□□ 1.48
NUP88-203ENST00000572019 FAM43AQ8N2R8 423 aa24.3■■□□□ 1.48
NUP88-203ENST00000572019 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.3■■□□□ 1.48
NUP88-203ENST00000572019 MRS2Q9HD23 443 aa24.3■■□□□ 1.48
NUP88-203ENST00000572019 C9orf78Q9NZ63 289 aaPredicted RBP24.3■■□□□ 1.48
NUP88-203ENST00000572019 RIPOR2Q9Y4F9 1068 aa24.3■■□□□ 1.48
NUP88-203ENST00000572019 HABP4Q5JVS0 413 aaKnown RBP24.29■■□□□ 1.48
NUP88-203ENST00000572019 OTUD7BQ6GQQ9 843 aa24.29■■□□□ 1.48
NUP88-203ENST00000572019 CCL15-CCL14A0A0B4J2E2 113 aa24.28■■□□□ 1.48
NUP88-203ENST00000572019 TNFAIP1Q13829 316 aa24.28■■□□□ 1.48
NUP88-203ENST00000572019 CCL15Q16663 113 aa24.28■■□□□ 1.48
NUP88-203ENST00000572019 LRRC24Q50LG9 513 aa24.28■■□□□ 1.48
NUP88-203ENST00000572019 OTUD5Q96G74 571 aa24.28■■□□□ 1.48
NUP88-203ENST00000572019 PTCH2Q9Y6C5 1203 aa24.28■■□□□ 1.48
NUP88-203ENST00000572019 CHAF1AQ13111 956 aaPredicted RBP24.27■■□□□ 1.48
NUP88-203ENST00000572019 FBXO33Q7Z6M2 555 aa24.27■■□□□ 1.48
NUP88-203ENST00000572019 ZNF333Q96JL9 665 aa24.27■■□□□ 1.48
NUP88-203ENST00000572019 ARHGAP39Q9C0H5 1083 aa24.27■■□□□ 1.48
NUP88-203ENST00000572019 MYH13Q9UKX3 1938 aa24.26■■□□□ 1.47
NUP88-203ENST00000572019 ALDH1L1O75891 902 aa24.26■■□□□ 1.47
NUP88-203ENST00000572019 MAP3K9P80192 1104 aa24.26■■□□□ 1.47
NUP88-203ENST00000572019 TAF1CQ15572 869 aaPredicted RBP24.26■■□□□ 1.47
NUP88-203ENST00000572019 MYCP01106 439 aaPredicted RBP24.25■■□□□ 1.47
NUP88-203ENST00000572019 ANKRD44Q8N8A2 993 aa24.25■■□□□ 1.47
NUP88-203ENST00000572019 SRCIN1Q9C0H9 1055 aa24.25■■□□□ 1.47
NUP88-203ENST00000572019 BICC1Q9H694 974 aaKnown RBP24.25■■□□□ 1.47
NUP88-203ENST00000572019 SNCAIPQ9Y6H5 919 aa24.25■■□□□ 1.47
NUP88-203ENST00000572019 VGLL2Q8N8G2 317 aa24.24■■□□□ 1.47
NUP88-203ENST00000572019 KLHDC4Q8TBB5 520 aa24.24■■□□□ 1.47
NUP88-203ENST00000572019 GCC1Q96CN9 775 aa24.23■■□□□ 1.47
NUP88-203ENST00000572019 UTYO14607 1347 aa24.23■■□□□ 1.47
NUP88-203ENST00000572019 CEP290O15078 2479 aa24.23■■□□□ 1.47
NUP88-203ENST00000572019 SPDYE5A6NIY4 337 aa24.22■■□□□ 1.47
NUP88-203ENST00000572019 GTF2A2P52657 109 aa24.22■■□□□ 1.47
NUP88-203ENST00000572019 RABL6Q3YEC7 729 aaPredicted RBP24.22■■□□□ 1.47
NUP88-203ENST00000572019 ZKSCAN4Q969J2 545 aaPredicted RBP24.22■■□□□ 1.47
NUP88-203ENST00000572019 ZFYVE28Q9HCC9 887 aa24.22■■□□□ 1.47
NUP88-203ENST00000572019 MROH5Q6ZUA9 1318 aa24.21■■□□□ 1.47
NUP88-203ENST00000572019 ECM2O94769 699 aaPredicted RBP24.21■■□□□ 1.47
NUP88-203ENST00000572019 BCAMP50895 628 aa24.21■■□□□ 1.47
NUP88-203ENST00000572019 APOBEC3HQ6NTF7 200 aaKnown RBP24.21■■□□□ 1.47
NUP88-203ENST00000572019 CSADQ9Y600 493 aa24.21■■□□□ 1.47
NUP88-203ENST00000572019 AK9Q5TCS8 1911 aa24.2■■□□□ 1.46
NUP88-203ENST00000572019 BTBD19C9JJ37 291 aa24.2■■□□□ 1.46
NUP88-203ENST00000572019 TNNI2P48788 182 aa24.2■■□□□ 1.46
NUP88-203ENST00000572019 SLC9C1Q4G0N8 1177 aa24.2■■□□□ 1.46
NUP88-203ENST00000572019 SH3TC2Q8TF17 1288 aa24.2■■□□□ 1.46
NUP88-203ENST00000572019 WRNIP1Q96S55 665 aa24.2■■□□□ 1.46
NUP88-203ENST00000572019 IRF6O14896 467 aa24.19■■□□□ 1.46
NUP88-203ENST00000572019 CTGFP29279 349 aa24.19■■□□□ 1.46
NUP88-203ENST00000572019 METTL24Q5JXM2 366 aa24.19■■□□□ 1.46
NUP88-203ENST00000572019 VPS37DQ86XT2 251 aa24.19■■□□□ 1.46
NUP88-203ENST00000572019 TEKT1Q969V4 418 aa24.19■■□□□ 1.46
NUP88-203ENST00000572019 HDLBPQ00341 1268 aaKnown RBP24.18■■□□□ 1.46
NUP88-203ENST00000572019 ZDHHC15Q96MV8 337 aa24.18■■□□□ 1.46
NUP88-203ENST00000572019 TLR2O60603 784 aa24.17■■□□□ 1.46
NUP88-203ENST00000572019 PDE8BO95263 885 aa24.17■■□□□ 1.46
NUP88-203ENST00000572019 FXR1P51114 621 aaKnown RBP eCLIP24.17■■□□□ 1.46
NUP88-203ENST00000572019 MIGA2Q7L4E1 593 aa24.17■■□□□ 1.46
NUP88-203ENST00000572019 TMEM106CQ9BVX2 250 aa24.17■■□□□ 1.46
NUP88-203ENST00000572019 TRIOBPQ9H2D6 2365 aa24.16■■□□□ 1.46
NUP88-203ENST00000572019 INPP5BP32019 993 aa24.16■■□□□ 1.46
NUP88-203ENST00000572019 LACTBP83111 547 aaPredicted RBP24.16■■□□□ 1.46
NUP88-203ENST00000572019 ERO1BQ86YB8 467 aa24.16■■□□□ 1.46
NUP88-203ENST00000572019 FRAT2O75474 233 aaPredicted RBP24.15■■□□□ 1.46
NUP88-203ENST00000572019 FGFR2P21802 821 aa24.15■■□□□ 1.46
NUP88-203ENST00000572019 SLC4A8Q2Y0W8 1093 aa24.15■■□□□ 1.46
NUP88-203ENST00000572019 TBC1D22AQ8WUA7 517 aa24.15■■□□□ 1.46
NUP88-203ENST00000572019 COLQQ9Y215 455 aaPredicted RBP24.15■■□□□ 1.46
NUP88-203ENST00000572019 CETPP11597 493 aa24.14■■□□□ 1.45
NUP88-203ENST00000572019 CAVIN4Q5BKX8 364 aa24.14■■□□□ 1.45
NUP88-203ENST00000572019 FAM83AQ86UY5 434 aa24.14■■□□□ 1.45
NUP88-203ENST00000572019 MRPL50Q8N5N7 158 aaKnown RBP24.14■■□□□ 1.45
NUP88-203ENST00000572019 MGAMO43451 1857 aa24.13■■□□□ 1.45
NUP88-203ENST00000572019 PPIL2Q13356 520 aa24.13■■□□□ 1.45
NUP88-203ENST00000572019 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.13■■□□□ 1.45
NUP88-203ENST00000572019 SNAPC2Q13487 334 aa24.12■■□□□ 1.45
NUP88-203ENST00000572019 MTFR1Q15390 333 aa24.12■■□□□ 1.45
NUP88-203ENST00000572019 NBPF11Q86T75 865 aa24.12■■□□□ 1.45
NUP88-203ENST00000572019 SHISA4Q96DD7 197 aa24.12■■□□□ 1.45
NUP88-203ENST00000572019 USP44Q9H0E7 712 aa24.12■■□□□ 1.45
NUP88-203ENST00000572019 CPA4Q9UI42 421 aa24.12■■□□□ 1.45
NUP88-203ENST00000572019 RPAP1Q9BWH6 1393 aaPredicted RBP24.12■■□□□ 1.45
NUP88-203ENST00000572019 ZNF521Q96K83 1311 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms