RNA–Protein interactions for RNA: ENST00000570979.1

SPNS2-203, Transcript of sphingolipid transporter 2, humanhuman

TSL 1 (best)

Gene SPNS2, Length 1,768 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPNS2-203ENST00000570979 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.18■■□□□ 1.3
SPNS2-203ENST00000570979 GRPEL1Q9HAV7 217 aa23.18■■□□□ 1.3
SPNS2-203ENST00000570979 CNNM1Q9NRU3 951 aa23.18■■□□□ 1.3
SPNS2-203ENST00000570979 RIPOR2Q9Y4F9 1068 aa23.18■■□□□ 1.3
SPNS2-203ENST00000570979 ZNF445P59923 1031 aa23.17■■□□□ 1.3
SPNS2-203ENST00000570979 ATP2B3Q16720 1220 aa23.17■■□□□ 1.3
SPNS2-203ENST00000570979 EDC3Q96F86 508 aaKnown RBP23.17■■□□□ 1.3
SPNS2-203ENST00000570979 PUS3Q9BZE2 481 aaKnown RBP23.17■■□□□ 1.3
SPNS2-203ENST00000570979 MROH5Q6ZUA9 1318 aa23.17■■□□□ 1.3
SPNS2-203ENST00000570979 PPEF1O14829 653 aaPredicted RBP23.17■■□□□ 1.3
SPNS2-203ENST00000570979 ANP32BQ92688 251 aaKnown RBP23.16■■□□□ 1.3
SPNS2-203ENST00000570979 TAF1P21675 1872 aa23.16■■□□□ 1.3
SPNS2-203ENST00000570979 UQCRFS1P1P0C7P4 283 aa23.15■■□□□ 1.3
SPNS2-203ENST00000570979 IARSP41252 1262 aaKnown RBP23.15■■□□□ 1.3
SPNS2-203ENST00000570979 PSMD1Q99460 953 aa23.15■■□□□ 1.3
SPNS2-203ENST00000570979 COL4A5P29400 1685 aa23.15■■□□□ 1.3
SPNS2-203ENST00000570979 ZNF541Q9H0D2 1346 aa23.15■■□□□ 1.3
SPNS2-203ENST00000570979 DDX60Q8IY21 1712 aaKnown RBP23.15■■□□□ 1.3
SPNS2-203ENST00000570979 XRCC6P12956 609 aaKnown RBP eCLIP23.14■■□□□ 1.3
SPNS2-203ENST00000570979 CCDC83Q8IWF9 413 aa23.14■■□□□ 1.3
SPNS2-203ENST00000570979 TMEM87AQ8NBN3 555 aa23.14■■□□□ 1.3
SPNS2-203ENST00000570979 RRP9O43818 475 aaKnown RBP23.14■■□□□ 1.29
SPNS2-203ENST00000570979 SYT1P21579 422 aa23.14■■□□□ 1.29
SPNS2-203ENST00000570979 CC2D2BQ6DHV5 1058 aa23.14■■□□□ 1.29
SPNS2-203ENST00000570979 GJB2P29033 226 aa23.13■■□□□ 1.29
SPNS2-203ENST00000570979 FSTL1Q12841 308 aa23.13■■□□□ 1.29
SPNS2-203ENST00000570979 ME3Q16798 604 aa23.13■■□□□ 1.29
SPNS2-203ENST00000570979 KIF3AQ9Y496 699 aa23.13■■□□□ 1.29
SPNS2-203ENST00000570979 PDE8BO95263 885 aa23.12■■□□□ 1.29
SPNS2-203ENST00000570979 GREM2Q9H772 168 aa23.12■■□□□ 1.29
SPNS2-203ENST00000570979 ATP6V0A2Q9Y487 856 aa23.12■■□□□ 1.29
SPNS2-203ENST00000570979 RTL9Q8NET4 1388 aa23.11■■□□□ 1.29
SPNS2-203ENST00000570979 F13A1P00488 732 aa23.11■■□□□ 1.29
SPNS2-203ENST00000570979 CPA1P15085 419 aa23.11■■□□□ 1.29
SPNS2-203ENST00000570979 CCDC152Q4G0S7 254 aa23.11■■□□□ 1.29
SPNS2-203ENST00000570979 DHX32Q7L7V1 743 aaKnown RBP23.11■■□□□ 1.29
SPNS2-203ENST00000570979 LPIN2Q92539 896 aa23.11■■□□□ 1.29
SPNS2-203ENST00000570979 APPBP2Q92624 585 aa23.11■■□□□ 1.29
SPNS2-203ENST00000570979 TPCN1Q9ULQ1 816 aa23.11■■□□□ 1.29
SPNS2-203ENST00000570979 COL4A1P02462 1669 aa23.1■■□□□ 1.29
SPNS2-203ENST00000570979 FZD9O00144 591 aa23.1■■□□□ 1.29
SPNS2-203ENST00000570979 CYP21A2P08686 494 aa23.1■■□□□ 1.29
SPNS2-203ENST00000570979 APLP1P51693 650 aa23.1■■□□□ 1.29
SPNS2-203ENST00000570979 HTRA3P83110 453 aa23.1■■□□□ 1.29
SPNS2-203ENST00000570979 FGD1P98174 961 aa23.1■■□□□ 1.29
SPNS2-203ENST00000570979 PUM3Q15397 648 aaKnown RBP23.1■■□□□ 1.29
SPNS2-203ENST00000570979 CAVIN1Q6NZI2 390 aaKnown RBP23.1■■□□□ 1.29
SPNS2-203ENST00000570979 SMC1BQ8NDV3 1235 aa23.1■■□□□ 1.29
SPNS2-203ENST00000570979 LLPHQ9BRT6 129 aaKnown RBP23.1■■□□□ 1.29
SPNS2-203ENST00000570979 LETM1O95202 739 aaPredicted RBP23.09■■□□□ 1.29
SPNS2-203ENST00000570979 POTEIP0CG38 1075 aa23.09■■□□□ 1.29
SPNS2-203ENST00000570979 POTEJP0CG39 1038 aa23.09■■□□□ 1.29
SPNS2-203ENST00000570979 HSPD1P10809 573 aaKnown RBP23.09■■□□□ 1.29
SPNS2-203ENST00000570979 LARP1BQ659C4 914 aaKnown RBP23.09■■□□□ 1.29
SPNS2-203ENST00000570979 BBOX1O75936 387 aa23.08■■□□□ 1.29
SPNS2-203ENST00000570979 SLC5A1P13866 664 aa23.08■■□□□ 1.29
SPNS2-203ENST00000570979 GRAPQ13588 217 aa23.08■■□□□ 1.29
SPNS2-203ENST00000570979 ZSCAN23Q3MJ62 389 aa23.08■■□□□ 1.29
SPNS2-203ENST00000570979 FOXD4L5Q5VV16 416 aaPredicted RBP23.08■■□□□ 1.29
SPNS2-203ENST00000570979 FBXL16Q8N461 479 aa23.08■■□□□ 1.29
SPNS2-203ENST00000570979 GRAPLQ8TC17 118 aaPredicted RBP23.08■■□□□ 1.29
SPNS2-203ENST00000570979 FOXD4L4Q8WXT5 416 aaPredicted RBP23.08■■□□□ 1.29
SPNS2-203ENST00000570979 L3MBTL3Q96JM7 780 aaPredicted RBP23.08■■□□□ 1.29
SPNS2-203ENST00000570979 SEC62Q99442 399 aaKnown RBP23.08■■□□□ 1.29
SPNS2-203ENST00000570979 MPHOSPH8Q99549 860 aa23.08■■□□□ 1.29
SPNS2-203ENST00000570979 NDUFB9Q9Y6M9 179 aa23.08■■□□□ 1.29
SPNS2-203ENST00000570979 MAST3O60307 1309 aa23.07■■□□□ 1.28
SPNS2-203ENST00000570979 TOB2Q14106 344 aaPredicted RBP23.07■■□□□ 1.28
SPNS2-203ENST00000570979 IMMTQ16891 758 aaKnown RBP23.07■■□□□ 1.28
SPNS2-203ENST00000570979 WASHC4Q2M389 1173 aa23.07■■□□□ 1.28
SPNS2-203ENST00000570979 CCDC129Q6ZRS4 1044 aa23.07■■□□□ 1.28
SPNS2-203ENST00000570979 VGLL2Q8N8G2 317 aa23.07■■□□□ 1.28
SPNS2-203ENST00000570979 SF3B3Q15393 1217 aaKnown RBP23.06■■□□□ 1.28
SPNS2-203ENST00000570979 GRIPAP1Q4V328 841 aa23.06■■□□□ 1.28
SPNS2-203ENST00000570979 SP8Q8IXZ3 490 aa23.06■■□□□ 1.28
SPNS2-203ENST00000570979 CCDC85AQ96PX6 553 aaPredicted RBP23.06■■□□□ 1.28
SPNS2-203ENST00000570979 LARGE1O95461 756 aa23.06■■□□□ 1.28
SPNS2-203ENST00000570979 ARID4AP29374 1257 aaPredicted RBP23.06■■□□□ 1.28
SPNS2-203ENST00000570979 ADORA1P30542 326 aa23.06■■□□□ 1.28
SPNS2-203ENST00000570979 IGHMBP2P38935 993 aaKnown RBP23.06■■□□□ 1.28
SPNS2-203ENST00000570979 LARGE2Q8N3Y3 721 aa23.06■■□□□ 1.28
SPNS2-203ENST00000570979 DNAJC5GQ8N7S2 189 aa23.06■■□□□ 1.28
SPNS2-203ENST00000570979 GPT2Q8TD30 523 aa23.06■■□□□ 1.28
SPNS2-203ENST00000570979 UBE3CQ15386 1083 aa23.05■■□□□ 1.28
SPNS2-203ENST00000570979 Q6ZUG5 572 aa23.05■■□□□ 1.28
SPNS2-203ENST00000570979 JDP2Q8WYK2 163 aa23.05■■□□□ 1.28
SPNS2-203ENST00000570979 CELF1Q92879 486 aaKnown RBP23.05■■□□□ 1.28
SPNS2-203ENST00000570979 MTMR6Q9Y217 621 aa23.05■■□□□ 1.28
SPNS2-203ENST00000570979 UBE2HP62256 183 aa23.04■■□□□ 1.28
SPNS2-203ENST00000570979 HMGN5P82970 282 aaKnown RBP23.04■■□□□ 1.28
SPNS2-203ENST00000570979 AOC3Q16853 763 aa23.04■■□□□ 1.28
SPNS2-203ENST00000570979 GTF3C6Q969F1 213 aa23.04■■□□□ 1.28
SPNS2-203ENST00000570979 CDC5LQ99459 802 aaKnown RBP23.04■■□□□ 1.28
SPNS2-203ENST00000570979 RTFDC1Q9BY42 306 aaPredicted RBP23.04■■□□□ 1.28
SPNS2-203ENST00000570979 TAF1DQ9H5J8 278 aaPredicted RBP23.04■■□□□ 1.28
SPNS2-203ENST00000570979 SCN4AP35499 1836 aa23.04■■□□□ 1.28
SPNS2-203ENST00000570979 ZAP70P43403 619 aa23.04■■□□□ 1.28
SPNS2-203ENST00000570979 USP48Q86UV5 1035 aa23.04■■□□□ 1.28
SPNS2-203ENST00000570979 AGXT2Q9BYV1 514 aa23.04■■□□□ 1.28
SPNS2-203ENST00000570979 WDR19Q8NEZ3 1342 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms