RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 GAL3ST3Q96A11 431 aa8.76□□□□□ -1.01
UBR1-208ENST00000569066 SEC16BQ96JE7 1060 aa8.76□□□□□ -1.01
UBR1-208ENST00000569066 ZC3H12CQ9C0D7 883 aaKnown RBP8.76□□□□□ -1.01
UBR1-208ENST00000569066 ZSWIM4Q9H7M6 989 aa8.76□□□□□ -1.01
UBR1-208ENST00000569066 ZFYVE1Q9HBF4 777 aa8.76□□□□□ -1.01
UBR1-208ENST00000569066 CBX8Q9HC52 389 aa8.76□□□□□ -1.01
UBR1-208ENST00000569066 SLC7A3Q8WY07 619 aa8.75□□□□□ -1.01
UBR1-208ENST00000569066 AVENQ9NQS1 362 aaPredicted RBP8.75□□□□□ -1.01
UBR1-208ENST00000569066 NXF1Q9UBU9 619 aaKnown RBP8.75□□□□□ -1.01
UBR1-208ENST00000569066 STARD13Q9Y3M8 1113 aa8.75□□□□□ -1.01
UBR1-208ENST00000569066 CDK8P49336 464 aa8.75□□□□□ -1.01
UBR1-208ENST00000569066 BMS1Q14692 1282 aaKnown RBP8.75□□□□□ -1.01
UBR1-208ENST00000569066 ADAM19Q9H013 955 aa8.75□□□□□ -1.01
UBR1-208ENST00000569066 IGF1RP08069 1367 aa8.75□□□□□ -1.01
UBR1-208ENST00000569066 FAM221AA4D161 298 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 SOX1O00570 391 aaPredicted RBP8.74□□□□□ -1.01
UBR1-208ENST00000569066 IKBKEQ14164 716 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 ANAPC16Q96DE5 110 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 MIR1-1HGQ9H1L0 117 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 MBIPQ9NS73 344 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 ELOA3CA0A087WX78 387 aaPredicted RBP8.74□□□□□ -1.01
UBR1-208ENST00000569066 ELOA3DA6NLF2 546 aaPredicted RBP8.74□□□□□ -1.01
UBR1-208ENST00000569066 ALBP02768 609 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 RPS26P62854 115 aaKnown RBP8.74□□□□□ -1.01
UBR1-208ENST00000569066 PPP2R3AQ06190 1150 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 GRIK5Q16478 980 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 ELOA3BQ3SY89 546 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 ELOA3Q8NG57 546 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 SPATA32Q96LK8 384 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 COL25A1Q9BXS0 654 aaPredicted RBP8.74□□□□□ -1.01
UBR1-208ENST00000569066 JPH1Q9HDC5 661 aaPredicted RBP8.74□□□□□ -1.01
UBR1-208ENST00000569066 ERBB4Q15303 1308 aa8.74□□□□□ -1.01
UBR1-208ENST00000569066 NME2P22392 152 aa8.73□□□□□ -1.01
UBR1-208ENST00000569066 PDZD3Q86UT5 571 aa8.73□□□□□ -1.01
UBR1-208ENST00000569066 FAM169BQ8N8A8 192 aa8.73□□□□□ -1.01
UBR1-208ENST00000569066 HIRIP3Q9BW71 556 aaPredicted RBP8.73□□□□□ -1.01
UBR1-208ENST00000569066 KRT76Q01546 638 aa8.73□□□□□ -1.01
UBR1-208ENST00000569066 MAP1SQ66K74 1059 aaPredicted RBP8.73□□□□□ -1.01
UBR1-208ENST00000569066 GATAD2BQ8WXI9 593 aa8.73□□□□□ -1.01
UBR1-208ENST00000569066 NKD1Q969G9 470 aa8.73□□□□□ -1.01
UBR1-208ENST00000569066 RGS9O75916 674 aaPredicted RBP8.72□□□□□ -1.01
UBR1-208ENST00000569066 LMNB1P20700 586 aa8.72□□□□□ -1.01
UBR1-208ENST00000569066 BAG6P46379 1132 aa8.72□□□□□ -1.01
UBR1-208ENST00000569066 LLGL2Q6P1M3 1020 aa8.72□□□□□ -1.01
UBR1-208ENST00000569066 HNRNPLLQ8WVV9 542 aaKnown RBP8.72□□□□□ -1.01
UBR1-208ENST00000569066 SELPP16109 830 aa8.71□□□□□ -1.01
UBR1-208ENST00000569066 NFX1Q12986 1120 aaKnown RBP8.71□□□□□ -1.01
UBR1-208ENST00000569066 SLITRK4Q8IW52 837 aa8.71□□□□□ -1.01
UBR1-208ENST00000569066 CARD10Q9BWT7 1032 aa8.71□□□□□ -1.01
UBR1-208ENST00000569066 OSBPL2Q9H1P3 480 aa8.71□□□□□ -1.01
UBR1-208ENST00000569066 FRRS1LQ9P0K9 344 aa8.71□□□□□ -1.01
UBR1-208ENST00000569066 H3BM21 787 aa8.71□□□□□ -1.02
UBR1-208ENST00000569066 LINC01387J3KSC0 135 aa8.71□□□□□ -1.02
UBR1-208ENST00000569066 CDC27P30260 824 aa8.71□□□□□ -1.02
UBR1-208ENST00000569066 MCM4P33991 863 aa8.71□□□□□ -1.02
UBR1-208ENST00000569066 ZNF252P-AS1Q0IIN9 211 aa8.71□□□□□ -1.02
UBR1-208ENST00000569066 ANKS3Q6ZW76 656 aa8.71□□□□□ -1.02
UBR1-208ENST00000569066 IL22RA1Q8N6P7 574 aa8.71□□□□□ -1.02
UBR1-208ENST00000569066 BRMS1Q9HCU9 246 aa8.71□□□□□ -1.02
UBR1-208ENST00000569066 GRIN3BO60391 1043 aa8.7□□□□□ -1.02
UBR1-208ENST00000569066 GK5Q6ZS86 529 aa8.7□□□□□ -1.02
UBR1-208ENST00000569066 SHDQ96IW2 340 aa8.7□□□□□ -1.02
UBR1-208ENST00000569066 CILPO75339 1184 aa8.7□□□□□ -1.02
UBR1-208ENST00000569066 ARNTP27540 789 aa8.7□□□□□ -1.02
UBR1-208ENST00000569066 AFF1P51825 1210 aaKnown RBP8.7□□□□□ -1.02
UBR1-208ENST00000569066 FBXW10Q5XX13 1052 aa8.7□□□□□ -1.02
UBR1-208ENST00000569066 C20orf204Q6ZNR8 217 aa8.7□□□□□ -1.02
UBR1-208ENST00000569066 REC114Q7Z4M0 266 aa8.7□□□□□ -1.02
UBR1-208ENST00000569066 CPLX3Q8WVH0 158 aa8.7□□□□□ -1.02
UBR1-208ENST00000569066 H3BRJ5 948 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 CTSBP07858 339 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 MAP2K3P46734 347 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 GSTM4Q03013 218 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 EPXP11678 715 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 CLCQ05315 142 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 SLCO4C1Q6ZQN7 724 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 CKAP2LQ8IYA6 745 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 KCNB2Q92953 911 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 ACDQ96AP0 544 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 SRRTQ9BXP5 876 aaKnown RBP8.69□□□□□ -1.02
UBR1-208ENST00000569066 LRRC3Q9BY71 257 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 CYP8B1Q9UNU6 501 aa8.69□□□□□ -1.02
UBR1-208ENST00000569066 CCDC85CA6NKD9 419 aa8.68□□□□□ -1.02
UBR1-208ENST00000569066 NRSN2Q9GZP1 204 aa8.68□□□□□ -1.02
UBR1-208ENST00000569066 M0R082 166 aa8.68□□□□□ -1.02
UBR1-208ENST00000569066 GSTP1P09211 210 aaKnown RBP8.68□□□□□ -1.02
UBR1-208ENST00000569066 SERINC3Q13530 473 aa8.68□□□□□ -1.02
UBR1-208ENST00000569066 MPP2Q14168 576 aa8.68□□□□□ -1.02
UBR1-208ENST00000569066 CWF19L2Q2TBE0 894 aaKnown RBP8.68□□□□□ -1.02
UBR1-208ENST00000569066 ZNF417Q8TAU3 575 aa8.68□□□□□ -1.02
UBR1-208ENST00000569066 ZNF587Q96SQ5 575 aaPredicted RBP8.68□□□□□ -1.02
UBR1-208ENST00000569066 POLR3KQ9Y2Y1 108 aaPredicted RBP8.68□□□□□ -1.02
UBR1-208ENST00000569066 KLF4O43474 513 aa8.67□□□□□ -1.02
UBR1-208ENST00000569066 CABP4P57796 275 aa8.67□□□□□ -1.02
UBR1-208ENST00000569066 NLGN1Q8N2Q7 840 aa8.67□□□□□ -1.02
UBR1-208ENST00000569066 NSFL1CQ9UNZ2 370 aaKnown RBP8.67□□□□□ -1.02
UBR1-208ENST00000569066 SAMM50Q9Y512 469 aa8.67□□□□□ -1.02
UBR1-208ENST00000569066 FAM177BA6PVY3 158 aa8.66□□□□□ -1.02
UBR1-208ENST00000569066 SMAD7O15105 426 aaKnown RBP8.66□□□□□ -1.02
UBR1-208ENST00000569066 JAZF1Q86VZ6 243 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms