RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 FBXO46Q6PJ61 603 aaPredicted RBP18.77■□□□□ 0.6
CLN3-236ENST00000568558 DZIP1LQ8IYY4 767 aaKnown RBP18.77■□□□□ 0.6
CLN3-236ENST00000568558 ANKRD13AQ8IZ07 590 aa18.77■□□□□ 0.6
CLN3-236ENST00000568558 IQSEC3Q9UPP2 1182 aaPredicted RBP18.77■□□□□ 0.6
CLN3-236ENST00000568558 GJA5P36382 358 aa18.76■□□□□ 0.59
CLN3-236ENST00000568558 CRKP46108 304 aa18.76■□□□□ 0.59
CLN3-236ENST00000568558 VPS37DQ86XT2 251 aa18.76■□□□□ 0.59
CLN3-236ENST00000568558 KLHDC4Q8TBB5 520 aa18.76■□□□□ 0.59
CLN3-236ENST00000568558 TEPSINQ96N21 525 aa18.76■□□□□ 0.59
CLN3-236ENST00000568558 SLFN5Q08AF3 891 aa18.75■□□□□ 0.59
CLN3-236ENST00000568558 CHAF1AQ13111 956 aaPredicted RBP18.75■□□□□ 0.59
CLN3-236ENST00000568558 CAVIN4Q5BKX8 364 aa18.75■□□□□ 0.59
CLN3-236ENST00000568558 CDAN1Q8IWY9 1227 aa18.75■□□□□ 0.59
CLN3-236ENST00000568558 TBC1D22AQ8WUA7 517 aa18.75■□□□□ 0.59
CLN3-236ENST00000568558 USP44Q9H0E7 712 aa18.75■□□□□ 0.59
CLN3-236ENST00000568558 SLC34A2O95436 690 aa18.74■□□□□ 0.59
CLN3-236ENST00000568558 HDLBPQ00341 1268 aaKnown RBP18.74■□□□□ 0.59
CLN3-236ENST00000568558 KIF16BQ96L93 1317 aa18.74■□□□□ 0.59
CLN3-236ENST00000568558 RBBP6Q7Z6E9 1792 aaKnown RBP18.73■□□□□ 0.59
CLN3-236ENST00000568558 TCP10L2B9ZVM9 353 aa18.73■□□□□ 0.59
CLN3-236ENST00000568558 FRAT2O75474 233 aaPredicted RBP18.73■□□□□ 0.59
CLN3-236ENST00000568558 TNNI2P48788 182 aa18.73■□□□□ 0.59
CLN3-236ENST00000568558 ALDH1L2Q3SY69 923 aa18.73■□□□□ 0.59
CLN3-236ENST00000568558 TMEM39BQ9GZU3 492 aa18.73■□□□□ 0.59
CLN3-236ENST00000568558 ELP3Q9H9T3 547 aa18.73■□□□□ 0.59
CLN3-236ENST00000568558 TESPA1A2RU30 521 aaPredicted RBP18.72■□□□□ 0.59
CLN3-236ENST00000568558 FGFR2P21802 821 aa18.72■□□□□ 0.59
CLN3-236ENST00000568558 BCAMP50895 628 aa18.72■□□□□ 0.59
CLN3-236ENST00000568558 OPTNQ96CV9 577 aa18.72■□□□□ 0.59
CLN3-236ENST00000568558 HTTP42858 3142 aa18.71■□□□□ 0.59
CLN3-236ENST00000568558 RFX5P48382 616 aaPredicted RBP18.71■□□□□ 0.59
CLN3-236ENST00000568558 CRHR2Q13324 411 aa18.71■□□□□ 0.59
CLN3-236ENST00000568558 PUM3Q15397 648 aaKnown RBP18.71■□□□□ 0.59
CLN3-236ENST00000568558 OTUD7BQ6GQQ9 843 aa18.71■□□□□ 0.59
CLN3-236ENST00000568558 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.71■□□□□ 0.59
CLN3-236ENST00000568558 TEKT1Q969V4 418 aa18.71■□□□□ 0.59
CLN3-236ENST00000568558 PTPN18Q99952 460 aa18.71■□□□□ 0.59
CLN3-236ENST00000568558 AK9Q5TCS8 1911 aa18.7■□□□□ 0.58
CLN3-236ENST00000568558 EYA2O00167 538 aa18.7■□□□□ 0.58
CLN3-236ENST00000568558 IFIT1P09914 478 aaKnown RBP18.7■□□□□ 0.58
CLN3-236ENST00000568558 OTOP1Q7RTM1 612 aa18.7■□□□□ 0.58
CLN3-236ENST00000568558 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.7■□□□□ 0.58
CLN3-236ENST00000568558 CDCA7LQ96GN5 454 aa18.7■□□□□ 0.58
CLN3-236ENST00000568558 ZDHHC15Q96MV8 337 aa18.7■□□□□ 0.58
CLN3-236ENST00000568558 MRIQ9BWK5 157 aa18.7■□□□□ 0.58
CLN3-236ENST00000568558 TRIM17Q9Y577 477 aa18.7■□□□□ 0.58
CLN3-236ENST00000568558 CACNB3P54284 484 aa18.69■□□□□ 0.58
CLN3-236ENST00000568558 MAP3K9P80192 1104 aa18.69■□□□□ 0.58
CLN3-236ENST00000568558 VGLL4Q14135 290 aa18.69■□□□□ 0.58
CLN3-236ENST00000568558 CNKSR2Q8WXI2 1034 aa18.69■□□□□ 0.58
CLN3-236ENST00000568558 MS4A4AQ96JQ5 239 aa18.69■□□□□ 0.58
CLN3-236ENST00000568558 SMC4Q9NTJ3 1288 aa18.69■□□□□ 0.58
CLN3-236ENST00000568558 SUGT1Q9Y2Z0 365 aa18.69■□□□□ 0.58
CLN3-236ENST00000568558 MAST3O60307 1309 aa18.69■□□□□ 0.58
CLN3-236ENST00000568558 TRMT2AQ8IZ69 625 aaKnown RBP18.68■□□□□ 0.58
CLN3-236ENST00000568558 ERO1AQ96HE7 468 aa18.68■□□□□ 0.58
CLN3-236ENST00000568558 SLC5A1P13866 664 aa18.67■□□□□ 0.58
CLN3-236ENST00000568558 FKBP1CQ5VVH2 108 aa18.67■□□□□ 0.58
CLN3-236ENST00000568558 APOBEC3HQ6NTF7 200 aaKnown RBP18.67■□□□□ 0.58
CLN3-236ENST00000568558 ATG9AQ7Z3C6 839 aa18.67■□□□□ 0.58
CLN3-236ENST00000568558 FAM83AQ86UY5 434 aa18.67■□□□□ 0.58
CLN3-236ENST00000568558 CD99L2Q8TCZ2 262 aa18.67■□□□□ 0.58
CLN3-236ENST00000568558 LPIN2Q92539 896 aa18.67■□□□□ 0.58
CLN3-236ENST00000568558 TMOD2Q9NZR1 351 aa18.67■□□□□ 0.58
CLN3-236ENST00000568558 CSADQ9Y600 493 aa18.67■□□□□ 0.58
CLN3-236ENST00000568558 RPAP1Q9BWH6 1393 aaPredicted RBP18.67■□□□□ 0.58
CLN3-236ENST00000568558 MYH2Q9UKX2 1941 aa18.66■□□□□ 0.58
CLN3-236ENST00000568558 HHIPL2Q6UWX4 724 aa18.66■□□□□ 0.58
CLN3-236ENST00000568558 BRI3BPQ8WY22 251 aa18.66■□□□□ 0.58
CLN3-236ENST00000568558 CENPFP49454 3210 aa18.66■□□□□ 0.58
CLN3-236ENST00000568558 ZSWIM8A7E2V4 1837 aa18.65■□□□□ 0.58
CLN3-236ENST00000568558 DOCK2Q92608 1830 aa18.65■□□□□ 0.58
CLN3-236ENST00000568558 CCL15-CCL14A0A0B4J2E2 113 aa18.65■□□□□ 0.58
CLN3-236ENST00000568558 UBTFL1P0CB47 393 aaPredicted RBP18.65■□□□□ 0.58
CLN3-236ENST00000568558 GTF2A2P52657 109 aa18.65■□□□□ 0.58
CLN3-236ENST00000568558 SP3Q02447 781 aa18.65■□□□□ 0.58
CLN3-236ENST00000568558 CCL15Q16663 113 aa18.65■□□□□ 0.58
CLN3-236ENST00000568558 WDR66Q8TBY9 1149 aa18.65■□□□□ 0.58
CLN3-236ENST00000568558 OTUD5Q96G74 571 aa18.65■□□□□ 0.58
CLN3-236ENST00000568558 FBXO3Q9UK99 471 aa18.65■□□□□ 0.58
CLN3-236ENST00000568558 SPDYE5A6NIY4 337 aa18.64■□□□□ 0.57
CLN3-236ENST00000568558 CT47B1P0C2W7 299 aaPredicted RBP18.64■□□□□ 0.57
CLN3-236ENST00000568558 PRPF38BQ5VTL8 546 aaKnown RBP18.64■□□□□ 0.57
CLN3-236ENST00000568558 PTPN22Q9Y2R2 807 aa18.64■□□□□ 0.57
CLN3-236ENST00000568558 SNCAIPQ9Y6H5 919 aa18.64■□□□□ 0.57
CLN3-236ENST00000568558 CIAO1O76071 339 aa18.63■□□□□ 0.57
CLN3-236ENST00000568558 CAP1Q01518 475 aa18.63■□□□□ 0.57
CLN3-236ENST00000568558 TAF1CQ15572 869 aaPredicted RBP18.63■□□□□ 0.57
CLN3-236ENST00000568558 HOOK2Q96ED9 719 aa18.63■□□□□ 0.57
CLN3-236ENST00000568558 WRNIP1Q96S55 665 aa18.63■□□□□ 0.57
CLN3-236ENST00000568558 SIL1Q9H173 461 aa18.63■□□□□ 0.57
CLN3-236ENST00000568558 EFCC1Q9HA90 598 aa18.63■□□□□ 0.57
CLN3-236ENST00000568558 NOB1Q9ULX3 412 aaKnown RBP18.63■□□□□ 0.57
CLN3-236ENST00000568558 KIAA0100Q14667 2235 aaKnown RBP18.62■□□□□ 0.57
CLN3-236ENST00000568558 ATP2B3Q16720 1220 aa18.62■□□□□ 0.57
CLN3-236ENST00000568558 INTS3Q68E01 1043 aaKnown RBP18.62■□□□□ 0.57
CLN3-236ENST00000568558 ERO1BQ86YB8 467 aa18.62■□□□□ 0.57
CLN3-236ENST00000568558 FAM43AQ8N2R8 423 aa18.62■□□□□ 0.57
CLN3-236ENST00000568558 ZFYVE28Q9HCC9 887 aa18.62■□□□□ 0.57
CLN3-236ENST00000568558 DAGLAQ9Y4D2 1042 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms