RNA–Protein interactions for RNA: ENST00000568292.1

CDH3-207, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-207ENST00000568292 SUPT20HL1Q3ZLR7 823 aa12.72□□□□□ -0.37
CDH3-207ENST00000568292 PANK1Q8TE04 598 aa12.72□□□□□ -0.37
CDH3-207ENST00000568292 TEKT1Q969V4 418 aa12.72□□□□□ -0.37
CDH3-207ENST00000568292 NEUROD6Q96NK8 337 aa12.72□□□□□ -0.37
CDH3-207ENST00000568292 TDRD3Q9H7E2 651 aaKnown RBP12.72□□□□□ -0.37
CDH3-207ENST00000568292 VEZTQ9HBM0 779 aa12.72□□□□□ -0.37
CDH3-207ENST00000568292 ZNF70Q9UC06 446 aaPredicted RBP12.72□□□□□ -0.37
CDH3-207ENST00000568292 A0A1B0GUL7 405 aa12.71□□□□□ -0.37
CDH3-207ENST00000568292 PHKA1P46020 1223 aa12.71□□□□□ -0.37
CDH3-207ENST00000568292 TNFAIP1Q13829 316 aa12.71□□□□□ -0.37
CDH3-207ENST00000568292 POLA2Q14181 598 aa12.71□□□□□ -0.37
CDH3-207ENST00000568292 MVPQ14764 893 aaKnown RBP12.71□□□□□ -0.37
CDH3-207ENST00000568292 GRIK5Q16478 980 aa12.71□□□□□ -0.37
CDH3-207ENST00000568292 GORABQ5T7V8 394 aa12.71□□□□□ -0.37
CDH3-207ENST00000568292 CCDC102BQ68D86 513 aa12.71□□□□□ -0.37
CDH3-207ENST00000568292 HHIPL2Q6UWX4 724 aa12.71□□□□□ -0.37
CDH3-207ENST00000568292 SSH3Q8TE77 659 aa12.71□□□□□ -0.37
CDH3-207ENST00000568292 XAGE2Q96GT9 111 aa12.71□□□□□ -0.37
CDH3-207ENST00000568292 ZNF646O15015 1829 aaPredicted RBP12.7□□□□□ -0.38
CDH3-207ENST00000568292 FAM155AB1AL88 458 aaPredicted RBP12.7□□□□□ -0.38
CDH3-207ENST00000568292 PPP1R12BO60237 982 aaPredicted RBP12.7□□□□□ -0.38
CDH3-207ENST00000568292 SURF6O75683 361 aaKnown RBP12.7□□□□□ -0.38
CDH3-207ENST00000568292 ADORA1P30542 326 aa12.7□□□□□ -0.38
CDH3-207ENST00000568292 TNNI2P48788 182 aa12.7□□□□□ -0.38
CDH3-207ENST00000568292 OS9Q13438 667 aaPredicted RBP12.7□□□□□ -0.38
CDH3-207ENST00000568292 PRKG1Q13976 671 aa12.7□□□□□ -0.38
CDH3-207ENST00000568292 RASA3Q14644 834 aa12.7□□□□□ -0.38
CDH3-207ENST00000568292 SPDYE2Q495Y8 402 aa12.7□□□□□ -0.38
CDH3-207ENST00000568292 COL13A1Q5TAT6 717 aaPredicted RBP12.7□□□□□ -0.38
CDH3-207ENST00000568292 MOB2Q70IA6 237 aa12.7□□□□□ -0.38
CDH3-207ENST00000568292 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.7□□□□□ -0.38
CDH3-207ENST00000568292 ZDHHC15Q96MV8 337 aa12.7□□□□□ -0.38
CDH3-207ENST00000568292 CHMP4BQ9H444 224 aaKnown RBP12.7□□□□□ -0.38
CDH3-207ENST00000568292 C1orf115Q9H7X2 142 aa12.7□□□□□ -0.38
CDH3-207ENST00000568292 PRDM10Q9NQV6 1147 aa12.7□□□□□ -0.38
CDH3-207ENST00000568292 CA12O43570 354 aa12.69□□□□□ -0.38
CDH3-207ENST00000568292 LDHBP07195 334 aaKnown RBP12.69□□□□□ -0.38
CDH3-207ENST00000568292 KIF23Q02241 960 aaPredicted RBP12.69□□□□□ -0.38
CDH3-207ENST00000568292 REM2Q8IYK8 340 aaPredicted RBP12.69□□□□□ -0.38
CDH3-207ENST00000568292 ZGPATQ8N5A5 531 aaKnown RBP12.69□□□□□ -0.38
CDH3-207ENST00000568292 GPR108Q9NPR9 543 aa12.69□□□□□ -0.38
CDH3-207ENST00000568292 ANGEL1Q9UNK9 670 aaKnown RBP12.69□□□□□ -0.38
CDH3-207ENST00000568292 NOP58Q9Y2X3 529 aaKnown RBP12.69□□□□□ -0.38
CDH3-207ENST00000568292 SALL1Q9NSC2 1324 aa12.68□□□□□ -0.38
CDH3-207ENST00000568292 COL1A1P02452 1464 aaPredicted RBP12.68□□□□□ -0.38
CDH3-207ENST00000568292 TCP10L2B9ZVM9 353 aa12.68□□□□□ -0.38
CDH3-207ENST00000568292 SLC10A3P09131 477 aa12.68□□□□□ -0.38
CDH3-207ENST00000568292 LBX1P52954 281 aa12.68□□□□□ -0.38
CDH3-207ENST00000568292 NBPF12Q5TAG4 269 aaPredicted RBP12.68□□□□□ -0.38
CDH3-207ENST00000568292 SPTY2D1Q68D10 685 aaPredicted RBP12.68□□□□□ -0.38
CDH3-207ENST00000568292 SLC10A4Q96EP9 437 aa12.68□□□□□ -0.38
CDH3-207ENST00000568292 ZIC5Q96T25 663 aa12.68□□□□□ -0.38
CDH3-207ENST00000568292 TMOD2Q9NZR1 351 aa12.68□□□□□ -0.38
CDH3-207ENST00000568292 DDX19BQ9UMR2 479 aa12.68□□□□□ -0.38
CDH3-207ENST00000568292 AOX1Q06278 1338 aa12.67□□□□□ -0.38
CDH3-207ENST00000568292 UNCXA6NJT0 531 aa12.67□□□□□ -0.38
CDH3-207ENST00000568292 UQCRFS1P1P0C7P4 283 aa12.67□□□□□ -0.38
CDH3-207ENST00000568292 HSPA8P11142 646 aaKnown RBP12.67□□□□□ -0.38
CDH3-207ENST00000568292 MAP3K11Q16584 847 aa12.67□□□□□ -0.38
CDH3-207ENST00000568292 LDLRAD1Q5T700 205 aa12.67□□□□□ -0.38
CDH3-207ENST00000568292 IFFO2Q5TF58 517 aa12.67□□□□□ -0.38
CDH3-207ENST00000568292 APOBEC3HQ6NTF7 200 aaKnown RBP12.67□□□□□ -0.38
CDH3-207ENST00000568292 RASAL3Q86YV0 1011 aa12.67□□□□□ -0.38
CDH3-207ENST00000568292 SLF2Q8IX21 1173 aa12.67□□□□□ -0.38
CDH3-207ENST00000568292 RPAP2Q8IXW5 612 aaPredicted RBP12.67□□□□□ -0.38
CDH3-207ENST00000568292 COG6Q9Y2V7 657 aa12.67□□□□□ -0.38
CDH3-207ENST00000568292 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.67□□□□□ -0.38
CDH3-207ENST00000568292 PDS5AQ29RF7 1337 aaKnown RBP12.66□□□□□ -0.38
CDH3-207ENST00000568292 USP2O75604 605 aaPredicted RBP12.66□□□□□ -0.38
CDH3-207ENST00000568292 PRDX5P30044 214 aa12.66□□□□□ -0.38
CDH3-207ENST00000568292 IREB2P48200 963 aaKnown RBP12.66□□□□□ -0.38
CDH3-207ENST00000568292 PDE3AQ14432 1141 aa12.66□□□□□ -0.38
CDH3-207ENST00000568292 CCDC158Q5M9N0 1113 aa12.66□□□□□ -0.38
CDH3-207ENST00000568292 FKBP1CQ5VVH2 108 aa12.66□□□□□ -0.38
CDH3-207ENST00000568292 CEP85Q6P2H3 762 aa12.66□□□□□ -0.38
CDH3-207ENST00000568292 TNS4Q8IZW8 715 aa12.66□□□□□ -0.38
CDH3-207ENST00000568292 CSRNP1Q96S65 589 aa12.66□□□□□ -0.38
CDH3-207ENST00000568292 ABCF2Q9UG63 623 aa12.66□□□□□ -0.38
CDH3-207ENST00000568292 RASGRF1Q13972 1273 aa12.65□□□□□ -0.38
CDH3-207ENST00000568292 HSP90AB4PQ58FF6 505 aa12.65□□□□□ -0.38
CDH3-207ENST00000568292 TNNI3KQ59H18 835 aa12.65□□□□□ -0.38
CDH3-207ENST00000568292 ERICH6Q7L0X2 663 aa12.65□□□□□ -0.38
CDH3-207ENST00000568292 FAM83AQ86UY5 434 aa12.65□□□□□ -0.38
CDH3-207ENST00000568292 HOOK2Q96ED9 719 aa12.65□□□□□ -0.38
CDH3-207ENST00000568292 ZBTB40Q9NUA8 1239 aa12.65□□□□□ -0.38
CDH3-207ENST00000568292 FPGT-TNNI3KV9GXZ4 949 aa12.65□□□□□ -0.38
CDH3-207ENST00000568292 PAPPA2Q9BXP8 1791 aa12.64□□□□□ -0.39
CDH3-207ENST00000568292 HMMRO75330 724 aa12.64□□□□□ -0.39
CDH3-207ENST00000568292 LDHCP07864 332 aa12.64□□□□□ -0.39
CDH3-207ENST00000568292 ARID4AP29374 1257 aaPredicted RBP12.64□□□□□ -0.39
CDH3-207ENST00000568292 CACNB3P54284 484 aa12.64□□□□□ -0.39
CDH3-207ENST00000568292 DIXDC1Q155Q3 683 aa12.64□□□□□ -0.39
CDH3-207ENST00000568292 TTC39AQ5SRH9 613 aa12.64□□□□□ -0.39
CDH3-207ENST00000568292 DZIP1Q86YF9 867 aaKnown RBP12.64□□□□□ -0.39
CDH3-207ENST00000568292 ERC1Q8IUD2 1116 aa12.64□□□□□ -0.39
CDH3-207ENST00000568292 ANKRD13AQ8IZ07 590 aa12.64□□□□□ -0.39
CDH3-207ENST00000568292 SPATA5Q8NB90 893 aa12.64□□□□□ -0.39
CDH3-207ENST00000568292 FAM163AQ96GL9 167 aaPredicted RBP12.64□□□□□ -0.39
CDH3-207ENST00000568292 TEPSINQ96N21 525 aa12.64□□□□□ -0.39
CDH3-207ENST00000568292 TMEM39BQ9GZU3 492 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms