RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 RBM5P52756 815 aaKnown RBP eCLIP23.2■■□□□ 1.3
SMPD3-209ENST00000567223 WDR66Q8TBY9 1149 aa23.2■■□□□ 1.3
SMPD3-209ENST00000567223 ZDHHC15Q96MV8 337 aa23.2■■□□□ 1.3
SMPD3-209ENST00000567223 ZNF70Q9UC06 446 aaPredicted RBP23.2■■□□□ 1.3
SMPD3-209ENST00000567223 SALL1Q9NSC2 1324 aa23.19■■□□□ 1.3
SMPD3-209ENST00000567223 CLRN2A0PK11 232 aa23.19■■□□□ 1.3
SMPD3-209ENST00000567223 TM4SF4P48230 202 aa23.19■■□□□ 1.3
SMPD3-209ENST00000567223 TTLL12Q14166 644 aaPredicted RBP23.19■■□□□ 1.3
SMPD3-209ENST00000567223 RASA3Q14644 834 aa23.19■■□□□ 1.3
SMPD3-209ENST00000567223 ATP2B3Q16720 1220 aa23.19■■□□□ 1.3
SMPD3-209ENST00000567223 ZKSCAN2Q63HK3 967 aa23.19■■□□□ 1.3
SMPD3-209ENST00000567223 TEKT1Q969V4 418 aa23.19■■□□□ 1.3
SMPD3-209ENST00000567223 RNF186Q9NXI6 227 aa23.19■■□□□ 1.3
SMPD3-209ENST00000567223 IQSEC3Q9UPP2 1182 aaPredicted RBP23.19■■□□□ 1.3
SMPD3-209ENST00000567223 AKAP11Q9UKA4 1901 aa23.19■■□□□ 1.3
SMPD3-209ENST00000567223 HHIPL2Q6UWX4 724 aa23.18■■□□□ 1.3
SMPD3-209ENST00000567223 SIL1Q9H173 461 aa23.18■■□□□ 1.3
SMPD3-209ENST00000567223 VEZTQ9HBM0 779 aa23.18■■□□□ 1.3
SMPD3-209ENST00000567223 TSKSQ9UJT2 592 aa23.18■■□□□ 1.3
SMPD3-209ENST00000567223 MYH13Q9UKX3 1938 aa23.18■■□□□ 1.3
SMPD3-209ENST00000567223 PDS5AQ29RF7 1337 aaKnown RBP23.17■■□□□ 1.3
SMPD3-209ENST00000567223 SRGAP3O43295 1099 aa23.17■■□□□ 1.3
SMPD3-209ENST00000567223 GNAI2P04899 355 aa23.17■■□□□ 1.3
SMPD3-209ENST00000567223 CHAF1AQ13111 956 aaPredicted RBP23.17■■□□□ 1.3
SMPD3-209ENST00000567223 GRIK5Q16478 980 aa23.17■■□□□ 1.3
SMPD3-209ENST00000567223 FKBP1CQ5VVH2 108 aa23.17■■□□□ 1.3
SMPD3-209ENST00000567223 CFHR5Q9BXR6 569 aa23.17■■□□□ 1.3
SMPD3-209ENST00000567223 GNL3LQ9NVN8 582 aaKnown RBP23.17■■□□□ 1.3
SMPD3-209ENST00000567223 ANGEL1Q9UNK9 670 aaKnown RBP23.17■■□□□ 1.3
SMPD3-209ENST00000567223 ZBTB48P10074 688 aaPredicted RBP23.16■■□□□ 1.3
SMPD3-209ENST00000567223 NOM1Q5C9Z4 860 aaKnown RBP23.16■■□□□ 1.3
SMPD3-209ENST00000567223 FRAT1Q92837 279 aaPredicted RBP23.16■■□□□ 1.3
SMPD3-209ENST00000567223 TEPSINQ96N21 525 aa23.16■■□□□ 1.3
SMPD3-209ENST00000567223 TDRD3Q9H7E2 651 aaKnown RBP23.16■■□□□ 1.3
SMPD3-209ENST00000567223 PA2G4Q9UQ80 394 aaKnown RBP23.16■■□□□ 1.3
SMPD3-209ENST00000567223 TNNI2P48788 182 aa23.15■■□□□ 1.3
SMPD3-209ENST00000567223 SREBF2Q12772 1141 aa23.15■■□□□ 1.3
SMPD3-209ENST00000567223 NBPF12Q5TAG4 269 aaPredicted RBP23.15■■□□□ 1.3
SMPD3-209ENST00000567223 SPRYD7Q5W111 196 aa23.14■■□□□ 1.29
SMPD3-209ENST00000567223 FAM83AQ86UY5 434 aa23.14■■□□□ 1.29
SMPD3-209ENST00000567223 DENND2AQ9ULE3 1009 aa23.14■■□□□ 1.29
SMPD3-209ENST00000567223 AKAP2Q9Y2D5 859 aa23.14■■□□□ 1.29
SMPD3-209ENST00000567223 RPAP1Q9BWH6 1393 aaPredicted RBP23.14■■□□□ 1.29
SMPD3-209ENST00000567223 TRPA1O75762 1119 aa23.13■■□□□ 1.29
SMPD3-209ENST00000567223 IREB2P48200 963 aaKnown RBP23.13■■□□□ 1.29
SMPD3-209ENST00000567223 INHBEP58166 350 aa23.13■■□□□ 1.29
SMPD3-209ENST00000567223 APOBEC3HQ6NTF7 200 aaKnown RBP23.13■■□□□ 1.29
SMPD3-209ENST00000567223 USP2O75604 605 aaPredicted RBP23.12■■□□□ 1.29
SMPD3-209ENST00000567223 ANKRD13AQ8IZ07 590 aa23.12■■□□□ 1.29
SMPD3-209ENST00000567223 TMEM57Q8N5G2 664 aa23.12■■□□□ 1.29
SMPD3-209ENST00000567223 ABHD8Q96I13 439 aa23.12■■□□□ 1.29
SMPD3-209ENST00000567223 TNNQ9UQP3 1299 aa23.12■■□□□ 1.29
SMPD3-209ENST00000567223 PRKG1Q13976 671 aa23.11■■□□□ 1.29
SMPD3-209ENST00000567223 CCDC102BQ68D86 513 aa23.11■■□□□ 1.29
SMPD3-209ENST00000567223 ZGPATQ8N5A5 531 aaKnown RBP23.11■■□□□ 1.29
SMPD3-209ENST00000567223 CLUAP1Q96AJ1 413 aa23.11■■□□□ 1.29
SMPD3-209ENST00000567223 MANSC4A6NHS7 340 aaPredicted RBP23.1■■□□□ 1.29
SMPD3-209ENST00000567223 PHKA1P46020 1223 aa23.1■■□□□ 1.29
SMPD3-209ENST00000567223 SLC10A4Q96EP9 437 aa23.1■■□□□ 1.29
SMPD3-209ENST00000567223 TMOD2Q9NZR1 351 aa23.1■■□□□ 1.29
SMPD3-209ENST00000567223 CASP8AP2Q9UKL3 1982 aa23.09■■□□□ 1.29
SMPD3-209ENST00000567223 A0A1B0GUL7 405 aa23.09■■□□□ 1.29
SMPD3-209ENST00000567223 ALDH1A1P00352 501 aa23.09■■□□□ 1.29
SMPD3-209ENST00000567223 MVPQ14764 893 aaKnown RBP23.09■■□□□ 1.29
SMPD3-209ENST00000567223 HOOK2Q96ED9 719 aa23.09■■□□□ 1.29
SMPD3-209ENST00000567223 WNK4Q96J92 1243 aa23.09■■□□□ 1.29
SMPD3-209ENST00000567223 OTOFQ9HC10 1997 aa23.09■■□□□ 1.29
SMPD3-209ENST00000567223 PNMA6EA0A0J9YXQ4 647 aa23.08■■□□□ 1.29
SMPD3-209ENST00000567223 TCP10L2B9ZVM9 353 aa23.08■■□□□ 1.29
SMPD3-209ENST00000567223 PRDX5P30044 214 aa23.08■■□□□ 1.29
SMPD3-209ENST00000567223 POLA2Q14181 598 aa23.08■■□□□ 1.29
SMPD3-209ENST00000567223 TMEM39BQ9GZU3 492 aa23.08■■□□□ 1.29
SMPD3-209ENST00000567223 FZD1Q9UP38 647 aa23.08■■□□□ 1.29
SMPD3-209ENST00000567223 CAPN15O75808 1086 aa23.07■■□□□ 1.28
SMPD3-209ENST00000567223 LDHBP07195 334 aaKnown RBP23.07■■□□□ 1.28
SMPD3-209ENST00000567223 TFCP2Q12800 502 aa23.07■■□□□ 1.28
SMPD3-209ENST00000567223 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.07■■□□□ 1.28
SMPD3-209ENST00000567223 SSH3Q8TE77 659 aa23.07■■□□□ 1.28
SMPD3-209ENST00000567223 CLMNQ96JQ2 1002 aa23.07■■□□□ 1.28
SMPD3-209ENST00000567223 TESPA1A2RU30 521 aaPredicted RBP23.06■■□□□ 1.28
SMPD3-209ENST00000567223 ADORA1P30542 326 aa23.06■■□□□ 1.28
SMPD3-209ENST00000567223 TIMM10P62072 90 aa23.06■■□□□ 1.28
SMPD3-209ENST00000567223 RASGRF1Q13972 1273 aa23.06■■□□□ 1.28
SMPD3-209ENST00000567223 FTSJ3Q8IY81 847 aaKnown RBP23.06■■□□□ 1.28
SMPD3-209ENST00000567223 XAGE2Q96GT9 111 aa23.06■■□□□ 1.28
SMPD3-209ENST00000567223 MCOLN1Q9GZU1 580 aa23.06■■□□□ 1.28
SMPD3-209ENST00000567223 DAGLAQ9Y4D2 1042 aa23.06■■□□□ 1.28
SMPD3-209ENST00000567223 ZBTB7BO15156 539 aaPredicted RBP23.05■■□□□ 1.28
SMPD3-209ENST00000567223 CDAN1Q8IWY9 1227 aa23.05■■□□□ 1.28
SMPD3-209ENST00000567223 FAM163AQ96GL9 167 aaPredicted RBP23.05■■□□□ 1.28
SMPD3-209ENST00000567223 GPR108Q9NPR9 543 aa23.05■■□□□ 1.28
SMPD3-209ENST00000567223 GAKO14976 1311 aa23.05■■□□□ 1.28
SMPD3-209ENST00000567223 ATP8B2P98198 1209 aa23.04■■□□□ 1.28
SMPD3-209ENST00000567223 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.04■■□□□ 1.28
SMPD3-209ENST00000567223 FAM151AQ8WW52 585 aa23.04■■□□□ 1.28
SMPD3-209ENST00000567223 G3BP1Q13283 466 aaKnown RBP eCLIP23.03■■□□□ 1.28
SMPD3-209ENST00000567223 DGKZQ13574 1117 aa23.03■■□□□ 1.28
SMPD3-209ENST00000567223 IFNL1Q8IU54 200 aa23.03■■□□□ 1.28
SMPD3-209ENST00000567223 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.03■■□□□ 1.28
SMPD3-209ENST00000567223 RLBP1P12271 317 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms