RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MYH2Q9UKX2 1941 aa23.95■■□□□ 1.42
CLN3-225ENST00000566824 CYP2E1P05181 493 aaPredicted RBP23.94■■□□□ 1.42
CLN3-225ENST00000566824 ANKRD45Q5TZF3 282 aa23.94■■□□□ 1.42
CLN3-225ENST00000566824 SMC5Q8IY18 1101 aa23.94■■□□□ 1.42
CLN3-225ENST00000566824 ZNF384Q8TF68 577 aa23.94■■□□□ 1.42
CLN3-225ENST00000566824 PRMT6Q96LA8 375 aaPredicted RBP23.94■■□□□ 1.42
CLN3-225ENST00000566824 ABCF2Q9UG63 623 aa23.94■■□□□ 1.42
CLN3-225ENST00000566824 ITGBL1O95965 494 aaPredicted RBP23.93■■□□□ 1.42
CLN3-225ENST00000566824 CRKP46108 304 aa23.93■■□□□ 1.42
CLN3-225ENST00000566824 DIXDC1Q155Q3 683 aa23.93■■□□□ 1.42
CLN3-225ENST00000566824 TSHZ3Q63HK5 1081 aa23.93■■□□□ 1.42
CLN3-225ENST00000566824 CNTROBQ8N137 903 aa23.93■■□□□ 1.42
CLN3-225ENST00000566824 GCC1Q96CN9 775 aa23.93■■□□□ 1.42
CLN3-225ENST00000566824 PIH1D3Q9NQM4 214 aaKnown RBP23.93■■□□□ 1.42
CLN3-225ENST00000566824 GGA3Q9NZ52 723 aa23.93■■□□□ 1.42
CLN3-225ENST00000566824 LDHBP07195 334 aaKnown RBP23.92■■□□□ 1.42
CLN3-225ENST00000566824 FSTL1Q12841 308 aa23.92■■□□□ 1.42
CLN3-225ENST00000566824 DLGAP5Q15398 846 aa23.92■■□□□ 1.42
CLN3-225ENST00000566824 ANGEL2Q5VTE6 544 aaKnown RBP23.92■■□□□ 1.42
CLN3-225ENST00000566824 B4GALNT3Q6L9W6 998 aa23.92■■□□□ 1.42
CLN3-225ENST00000566824 MTMR14Q8NCE2 650 aa23.92■■□□□ 1.42
CLN3-225ENST00000566824 GLIS2Q9BZE0 524 aaPredicted RBP23.92■■□□□ 1.42
CLN3-225ENST00000566824 ANTXR1Q9H6X2 564 aa23.92■■□□□ 1.42
CLN3-225ENST00000566824 SPDYE2BA6NHP3 402 aa23.91■■□□□ 1.42
CLN3-225ENST00000566824 TRAF5O00463 557 aa23.91■■□□□ 1.42
CLN3-225ENST00000566824 SPDYE6P0CI01 402 aa23.91■■□□□ 1.42
CLN3-225ENST00000566824 RBM5P52756 815 aaKnown RBP eCLIP23.91■■□□□ 1.42
CLN3-225ENST00000566824 ZC3H15Q8WU90 426 aaKnown RBP23.91■■□□□ 1.42
CLN3-225ENST00000566824 SERPINA10Q9UK55 444 aa23.91■■□□□ 1.42
CLN3-225ENST00000566824 SUGT1Q9Y2Z0 365 aa23.91■■□□□ 1.42
CLN3-225ENST00000566824 DOCK2Q92608 1830 aa23.91■■□□□ 1.42
CLN3-225ENST00000566824 EDC3Q96F86 508 aaKnown RBP23.9■■□□□ 1.42
CLN3-225ENST00000566824 ADM5C9JUS6 153 aa23.89■■□□□ 1.42
CLN3-225ENST00000566824 MMP14P50281 582 aa23.89■■□□□ 1.42
CLN3-225ENST00000566824 USP48Q86UV5 1035 aa23.89■■□□□ 1.42
CLN3-225ENST00000566824 CLRN2A0PK11 232 aa23.88■■□□□ 1.41
CLN3-225ENST00000566824 ATP5JP18859 108 aa23.88■■□□□ 1.41
CLN3-225ENST00000566824 HDLBPQ00341 1268 aaKnown RBP23.88■■□□□ 1.41
CLN3-225ENST00000566824 MECOMQ03112 1051 aa23.88■■□□□ 1.41
CLN3-225ENST00000566824 BOLA2Q9H3K6 86 aa23.88■■□□□ 1.41
CLN3-225ENST00000566824 DAGLAQ9Y4D2 1042 aa23.88■■□□□ 1.41
CLN3-225ENST00000566824 PASKQ96RG2 1323 aa23.88■■□□□ 1.41
CLN3-225ENST00000566824 SALL3Q9BXA9 1300 aa23.88■■□□□ 1.41
CLN3-225ENST00000566824 MAST2Q6P0Q8 1798 aa23.87■■□□□ 1.41
CLN3-225ENST00000566824 APOBEC3HQ6NTF7 200 aaKnown RBP23.87■■□□□ 1.41
CLN3-225ENST00000566824 ERICH6Q7L0X2 663 aa23.87■■□□□ 1.41
CLN3-225ENST00000566824 ZGPATQ8N5A5 531 aaKnown RBP23.87■■□□□ 1.41
CLN3-225ENST00000566824 TEKT1Q969V4 418 aa23.87■■□□□ 1.41
CLN3-225ENST00000566824 LNPKQ9C0E8 428 aa23.87■■□□□ 1.41
CLN3-225ENST00000566824 TDRD3Q9H7E2 651 aaKnown RBP23.87■■□□□ 1.41
CLN3-225ENST00000566824 HHIPL2Q6UWX4 724 aa23.86■■□□□ 1.41
CLN3-225ENST00000566824 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.86■■□□□ 1.41
CLN3-225ENST00000566824 DCPSQ96C86 337 aaKnown RBP23.86■■□□□ 1.41
CLN3-225ENST00000566824 NSUN4Q96CB9 384 aaKnown RBP23.86■■□□□ 1.41
CLN3-225ENST00000566824 ZDHHC15Q96MV8 337 aa23.86■■□□□ 1.41
CLN3-225ENST00000566824 DNAJC2Q99543 621 aaKnown RBP23.86■■□□□ 1.41
CLN3-225ENST00000566824 MRIQ9BWK5 157 aa23.86■■□□□ 1.41
CLN3-225ENST00000566824 ECHDC1Q9NTX5 307 aa23.86■■□□□ 1.41
CLN3-225ENST00000566824 RAI14Q9P0K7 980 aa23.86■■□□□ 1.41
CLN3-225ENST00000566824 TRPM7Q96QT4 1865 aa23.86■■□□□ 1.41
CLN3-225ENST00000566824 MAST3O60307 1309 aa23.86■■□□□ 1.41
CLN3-225ENST00000566824 NUCB1Q02818 461 aa23.85■■□□□ 1.41
CLN3-225ENST00000566824 SPTY2D1Q68D10 685 aaPredicted RBP23.85■■□□□ 1.41
CLN3-225ENST00000566824 KRT26Q7Z3Y9 468 aa23.85■■□□□ 1.41
CLN3-225ENST00000566824 DZIP1Q86YF9 867 aaKnown RBP23.85■■□□□ 1.41
CLN3-225ENST00000566824 LRP2BPQ9P2M1 347 aa23.85■■□□□ 1.41
CLN3-225ENST00000566824 ZNF70Q9UC06 446 aaPredicted RBP23.85■■□□□ 1.41
CLN3-225ENST00000566824 GOLIM4O00461 696 aa23.84■■□□□ 1.41
CLN3-225ENST00000566824 CACNB3P54284 484 aa23.84■■□□□ 1.41
CLN3-225ENST00000566824 PRAMEF18Q5VWM3 479 aa23.84■■□□□ 1.41
CLN3-225ENST00000566824 SPDYE2Q495Y8 402 aa23.84■■□□□ 1.41
CLN3-225ENST00000566824 CDC37L1Q7L3B6 337 aa23.84■■□□□ 1.41
CLN3-225ENST00000566824 CHD1LQ86WJ1 897 aa23.84■■□□□ 1.41
CLN3-225ENST00000566824 HAUS7Q99871 368 aa23.84■■□□□ 1.41
CLN3-225ENST00000566824 GAKO14976 1311 aa23.83■■□□□ 1.41
CLN3-225ENST00000566824 HTRA3P83110 453 aa23.83■■□□□ 1.4
CLN3-225ENST00000566824 ADGRA1Q86SQ6 560 aa23.83■■□□□ 1.4
CLN3-225ENST00000566824 PI4K2BQ8TCG2 481 aa23.83■■□□□ 1.4
CLN3-225ENST00000566824 PITPNM2Q9BZ72 1349 aa23.82■■□□□ 1.4
CLN3-225ENST00000566824 IDH1O75874 414 aaKnown RBP23.82■■□□□ 1.4
CLN3-225ENST00000566824 MX1P20591 662 aa23.82■■□□□ 1.4
CLN3-225ENST00000566824 VEZTQ9HBM0 779 aa23.82■■□□□ 1.4
CLN3-225ENST00000566824 MROH7-TTC4A0A0A0MT08 1334 aa23.82■■□□□ 1.4
CLN3-225ENST00000566824 MAP4K4O95819 1239 aaPredicted RBP23.81■■□□□ 1.4
CLN3-225ENST00000566824 CHGBP05060 677 aa23.81■■□□□ 1.4
CLN3-225ENST00000566824 CST9Q5W186 159 aa23.81■■□□□ 1.4
CLN3-225ENST00000566824 CDC42EP5Q6NZY7 148 aa23.81■■□□□ 1.4
CLN3-225ENST00000566824 SULF1Q8IWU6 871 aa23.81■■□□□ 1.4
CLN3-225ENST00000566824 FAM163AQ96GL9 167 aaPredicted RBP23.81■■□□□ 1.4
CLN3-225ENST00000566824 PAG1Q9NWQ8 432 aa23.81■■□□□ 1.4
CLN3-225ENST00000566824 MYH7P12883 1935 aa23.8■■□□□ 1.4
CLN3-225ENST00000566824 SLFNL1Q499Z3 407 aa23.8■■□□□ 1.4
CLN3-225ENST00000566824 CDCA5Q96FF9 252 aa23.8■■□□□ 1.4
CLN3-225ENST00000566824 ZBTB47Q9UFB7 747 aaPredicted RBP23.8■■□□□ 1.4
CLN3-225ENST00000566824 TTC41PQ6P2S7 1318 aa23.79■■□□□ 1.4
CLN3-225ENST00000566824 TCP10L2B9ZVM9 353 aa23.79■■□□□ 1.4
CLN3-225ENST00000566824 NEFLP07196 543 aa23.79■■□□□ 1.4
CLN3-225ENST00000566824 HSPA6P17066 643 aa23.79■■□□□ 1.4
CLN3-225ENST00000566824 PDE4AP27815 886 aa23.79■■□□□ 1.4
CLN3-225ENST00000566824 BTDP43251 543 aa23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms