RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 SNAP23O00161 211 aa21.53■■□□□ 1.04
CDH3-205ENST00000566808 CSF1RP07333 972 aa21.53■■□□□ 1.04
CDH3-205ENST00000566808 CETPP11597 493 aa21.53■■□□□ 1.04
CDH3-205ENST00000566808 MTFR1Q15390 333 aa21.53■■□□□ 1.04
CDH3-205ENST00000566808 SERPINA10Q9UK55 444 aa21.53■■□□□ 1.04
CDH3-205ENST00000566808 MYBBP1AQ9BQG0 1328 aaKnown RBP21.53■■□□□ 1.04
CDH3-205ENST00000566808 GJA8P48165 433 aa21.52■■□□□ 1.04
CDH3-205ENST00000566808 JAG2Q9Y219 1238 aa21.52■■□□□ 1.04
CDH3-205ENST00000566808 ANKRD18BA2A2Z9 1011 aa21.51■■□□□ 1.03
CDH3-205ENST00000566808 TAF5LO75529 589 aa21.51■■□□□ 1.03
CDH3-205ENST00000566808 GJB1P08034 283 aa21.51■■□□□ 1.03
CDH3-205ENST00000566808 TNNI2P48788 182 aa21.51■■□□□ 1.03
CDH3-205ENST00000566808 GCKRQ14397 625 aa21.51■■□□□ 1.03
CDH3-205ENST00000566808 HELBQ8NG08 1087 aaPredicted RBP21.51■■□□□ 1.03
CDH3-205ENST00000566808 TMEM39BQ9GZU3 492 aa21.51■■□□□ 1.03
CDH3-205ENST00000566808 TDRD3Q9H7E2 651 aaKnown RBP21.51■■□□□ 1.03
CDH3-205ENST00000566808 SRRDQ9UH36 339 aa21.51■■□□□ 1.03
CDH3-205ENST00000566808 MGAMO43451 1857 aa21.51■■□□□ 1.03
CDH3-205ENST00000566808 FAM205AQ6ZU69 1335 aa21.51■■□□□ 1.03
CDH3-205ENST00000566808 BTBD19C9JJ37 291 aa21.5■■□□□ 1.03
CDH3-205ENST00000566808 MNX1P50219 401 aaPredicted RBP21.5■■□□□ 1.03
CDH3-205ENST00000566808 CASP7P55210 303 aa21.5■■□□□ 1.03
CDH3-205ENST00000566808 SNAPC2Q13487 334 aa21.5■■□□□ 1.03
CDH3-205ENST00000566808 ERO1BQ86YB8 467 aa21.5■■□□□ 1.03
CDH3-205ENST00000566808 STK31Q9BXU1 1019 aa21.5■■□□□ 1.03
CDH3-205ENST00000566808 MYH16Q9H6N6 1097 aa21.5■■□□□ 1.03
CDH3-205ENST00000566808 CACNA1FO60840 1977 aa21.5■■□□□ 1.03
CDH3-205ENST00000566808 UNC80Q8N2C7 3258 aa21.49■■□□□ 1.03
CDH3-205ENST00000566808 ZBTB7BO15156 539 aaPredicted RBP21.49■■□□□ 1.03
CDH3-205ENST00000566808 GRK4P32298 578 aa21.49■■□□□ 1.03
CDH3-205ENST00000566808 MFSD14BQ5SR56 506 aa21.49■■□□□ 1.03
CDH3-205ENST00000566808 TTF2Q9UNY4 1162 aaKnown RBP21.49■■□□□ 1.03
CDH3-205ENST00000566808 ADAMTS8Q9UP79 889 aa21.49■■□□□ 1.03
CDH3-205ENST00000566808 SNCAIPQ9Y6H5 919 aa21.49■■□□□ 1.03
CDH3-205ENST00000566808 TCP10L2B9ZVM9 353 aa21.48■■□□□ 1.03
CDH3-205ENST00000566808 CCL5P13501 91 aa21.48■■□□□ 1.03
CDH3-205ENST00000566808 HOXD10P28358 340 aa21.48■■□□□ 1.03
CDH3-205ENST00000566808 DZIP1LQ8IYY4 767 aaKnown RBP21.48■■□□□ 1.03
CDH3-205ENST00000566808 RAET1EQ8TD07 263 aa21.48■■□□□ 1.03
CDH3-205ENST00000566808 TRIM47Q96LD4 638 aa21.48■■□□□ 1.03
CDH3-205ENST00000566808 RIPOR2Q9Y4F9 1068 aa21.48■■□□□ 1.03
CDH3-205ENST00000566808 FARP2O94887 1054 aaPredicted RBP21.47■■□□□ 1.03
CDH3-205ENST00000566808 PSMC4P43686 418 aa21.47■■□□□ 1.03
CDH3-205ENST00000566808 PPIL2Q13356 520 aa21.47■■□□□ 1.03
CDH3-205ENST00000566808 C17orf99Q6UX52 265 aa21.47■■□□□ 1.03
CDH3-205ENST00000566808 IRF6O14896 467 aa21.46■■□□□ 1.03
CDH3-205ENST00000566808 OSBPP22059 807 aa21.46■■□□□ 1.03
CDH3-205ENST00000566808 IFIT5Q13325 482 aaKnown RBP21.46■■□□□ 1.03
CDH3-205ENST00000566808 WRNIP1Q96S55 665 aa21.46■■□□□ 1.03
CDH3-205ENST00000566808 RNF208Q9H0X6 261 aa21.46■■□□□ 1.03
CDH3-205ENST00000566808 ALPK3Q96L96 1907 aa21.46■■□□□ 1.03
CDH3-205ENST00000566808 MYPNQ86TC9 1320 aa21.46■■□□□ 1.03
CDH3-205ENST00000566808 CTGFP29279 349 aa21.45■■□□□ 1.02
CDH3-205ENST00000566808 CRKP46108 304 aa21.45■■□□□ 1.02
CDH3-205ENST00000566808 UBXN2AP68543 259 aa21.45■■□□□ 1.02
CDH3-205ENST00000566808 TSPYL6Q8N831 410 aa21.45■■□□□ 1.02
CDH3-205ENST00000566808 HOOK2Q96ED9 719 aa21.45■■□□□ 1.02
CDH3-205ENST00000566808 ADGRA2Q96PE1 1338 aa21.45■■□□□ 1.02
CDH3-205ENST00000566808 SOX1O00570 391 aaPredicted RBP21.44■■□□□ 1.02
CDH3-205ENST00000566808 CPA4Q9UI42 421 aa21.44■■□□□ 1.02
CDH3-205ENST00000566808 RPAP1Q9BWH6 1393 aaPredicted RBP21.44■■□□□ 1.02
CDH3-205ENST00000566808 ECM2O94769 699 aaPredicted RBP21.43■■□□□ 1.02
CDH3-205ENST00000566808 FMNL1O95466 1100 aaPredicted RBP21.43■■□□□ 1.02
CDH3-205ENST00000566808 LINS1Q8NG48 757 aa21.43■■□□□ 1.02
CDH3-205ENST00000566808 TDRD7Q8NHU6 1098 aaKnown RBP21.43■■□□□ 1.02
CDH3-205ENST00000566808 U2AF1L4Q8WU68 220 aaKnown RBP21.43■■□□□ 1.02
CDH3-205ENST00000566808 LRCH3Q96II8 777 aa21.43■■□□□ 1.02
CDH3-205ENST00000566808 BIN2Q9UBW5 565 aaPredicted RBP21.43■■□□□ 1.02
CDH3-205ENST00000566808 G2E3Q7L622 706 aa21.42■■□□□ 1.02
CDH3-205ENST00000566808 ANKRD23Q86SG2 305 aa21.42■■□□□ 1.02
CDH3-205ENST00000566808 SLAIN1Q8ND83 568 aa21.42■■□□□ 1.02
CDH3-205ENST00000566808 ZKSCAN4Q969J2 545 aaPredicted RBP21.42■■□□□ 1.02
CDH3-205ENST00000566808 APAF1O14727 1248 aa21.41■■□□□ 1.02
CDH3-205ENST00000566808 EVI5O60447 810 aa21.41■■□□□ 1.02
CDH3-205ENST00000566808 CHMP3Q9Y3E7 222 aa21.41■■□□□ 1.02
CDH3-205ENST00000566808 CAPN2P17655 700 aa21.4■■□□□ 1.02
CDH3-205ENST00000566808 PPATQ06203 517 aa21.4■■□□□ 1.02
CDH3-205ENST00000566808 DCAF15Q66K64 600 aa21.4■■□□□ 1.02
CDH3-205ENST00000566808 GPR153Q6NV75 609 aa21.4■■□□□ 1.02
CDH3-205ENST00000566808 FAM83AQ86UY5 434 aa21.4■■□□□ 1.02
CDH3-205ENST00000566808 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.4■■□□□ 1.02
CDH3-205ENST00000566808 DNAAF4Q8WXU2 420 aa21.4■■□□□ 1.02
CDH3-205ENST00000566808 TMOD2Q9NZR1 351 aa21.4■■□□□ 1.02
CDH3-205ENST00000566808 PDHXO00330 501 aa21.39■■□□□ 1.01
CDH3-205ENST00000566808 HIBADHP31937 336 aaKnown RBP21.39■■□□□ 1.01
CDH3-205ENST00000566808 FOXO4P98177 505 aa21.39■■□□□ 1.01
CDH3-205ENST00000566808 HDLBPQ00341 1268 aaKnown RBP21.39■■□□□ 1.01
CDH3-205ENST00000566808 PRKCZQ05513 592 aa21.39■■□□□ 1.01
CDH3-205ENST00000566808 FLIIQ13045 1269 aa21.39■■□□□ 1.01
CDH3-205ENST00000566808 CNNM1Q9NRU3 951 aa21.39■■□□□ 1.01
CDH3-205ENST00000566808 PLIN1O60240 522 aa21.38■■□□□ 1.01
CDH3-205ENST00000566808 SGPL1O95470 568 aa21.38■■□□□ 1.01
CDH3-205ENST00000566808 SLC4A2P04920 1241 aa21.38■■□□□ 1.01
CDH3-205ENST00000566808 CACNB3P54284 484 aa21.38■■□□□ 1.01
CDH3-205ENST00000566808 FCGRTP55899 365 aa21.38■■□□□ 1.01
CDH3-205ENST00000566808 FKBP5Q13451 457 aaPredicted RBP21.38■■□□□ 1.01
CDH3-205ENST00000566808 UBE4AQ14139 1066 aa21.38■■□□□ 1.01
CDH3-205ENST00000566808 TAF7LQ5H9L4 462 aa21.38■■□□□ 1.01
CDH3-205ENST00000566808 FKBP1CQ5VVH2 108 aa21.38■■□□□ 1.01
CDH3-205ENST00000566808 LDHAL6AQ6ZMR3 332 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms