RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 SALL3Q9BXA9 1300 aa12.15□□□□□ -0.46
CLN3-220ENST00000566040 SMARCA5O60264 1052 aaPredicted RBP12.15□□□□□ -0.46
CLN3-220ENST00000566040 CRKP46108 304 aa12.15□□□□□ -0.46
CLN3-220ENST00000566040 DIXDC1Q155Q3 683 aa12.15□□□□□ -0.46
CLN3-220ENST00000566040 APOBEC3HQ6NTF7 200 aaKnown RBP12.15□□□□□ -0.46
CLN3-220ENST00000566040 USP48Q86UV5 1035 aa12.15□□□□□ -0.46
CLN3-220ENST00000566040 ZNF512BQ96KM6 892 aaPredicted RBP12.15□□□□□ -0.46
CLN3-220ENST00000566040 NEUROD6Q96NK8 337 aa12.15□□□□□ -0.46
CLN3-220ENST00000566040 SERPINA10Q9UK55 444 aa12.15□□□□□ -0.46
CLN3-220ENST00000566040 NDUFB9Q9Y6M9 179 aa12.15□□□□□ -0.46
CLN3-220ENST00000566040 PHIPQ8WWQ0 1821 aa12.15□□□□□ -0.46
CLN3-220ENST00000566040 NAV1Q8NEY1 1877 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 GAKO14976 1311 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 ATAD5Q96QE3 1844 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 MYH1P12882 1939 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 CYP2E1P05181 493 aaPredicted RBP12.14□□□□□ -0.47
CLN3-220ENST00000566040 SPDYE2Q495Y8 402 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 TBC1D9Q6ZT07 1266 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 VPS37DQ86XT2 251 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 SPATA5Q8NB90 893 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 WDR66Q8TBY9 1149 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 TBC1D22AQ8WUA7 517 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 DENND2AQ9ULE3 1009 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 DAGLAQ9Y4D2 1042 aa12.14□□□□□ -0.47
CLN3-220ENST00000566040 AK9Q5TCS8 1911 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 CLRN2A0PK11 232 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 APBB1O00213 710 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 MMP14P50281 582 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 IRX6P78412 446 aaPredicted RBP12.13□□□□□ -0.47
CLN3-220ENST00000566040 HDLBPQ00341 1268 aaKnown RBP12.13□□□□□ -0.47
CLN3-220ENST00000566040 OS9Q13438 667 aaPredicted RBP12.13□□□□□ -0.47
CLN3-220ENST00000566040 PRAMEF18Q5VWM3 479 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 KRT26Q7Z3Y9 468 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 ADGRA1Q86SQ6 560 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 AACSQ86V21 672 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 OTUD7AQ8TE49 926 aaPredicted RBP12.13□□□□□ -0.47
CLN3-220ENST00000566040 KIF1BPQ96EK5 621 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 CDCA5Q96FF9 252 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 ZDHHC15Q96MV8 337 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 TEPSINQ96N21 525 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 PIH1D3Q9NQM4 214 aaKnown RBP12.13□□□□□ -0.47
CLN3-220ENST00000566040 SNRKQ9NRH2 765 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 CREBZFQ9NS37 354 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 SUGT1Q9Y2Z0 365 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 PTPRFP10586 1907 aa12.13□□□□□ -0.47
CLN3-220ENST00000566040 RAB11FIP3O75154 756 aa12.12□□□□□ -0.47
CLN3-220ENST00000566040 HMMRO75330 724 aa12.12□□□□□ -0.47
CLN3-220ENST00000566040 IGHDP01880 384 aa12.12□□□□□ -0.47
CLN3-220ENST00000566040 ZAP70P43403 619 aa12.12□□□□□ -0.47
CLN3-220ENST00000566040 CDC37L1Q7L3B6 337 aa12.12□□□□□ -0.47
CLN3-220ENST00000566040 ERC1Q8IUD2 1116 aa12.12□□□□□ -0.47
CLN3-220ENST00000566040 MRIQ9BWK5 157 aa12.12□□□□□ -0.47
CLN3-220ENST00000566040 CHMP4BQ9H444 224 aaKnown RBP12.12□□□□□ -0.47
CLN3-220ENST00000566040 ANTXR1Q9H6X2 564 aa12.12□□□□□ -0.47
CLN3-220ENST00000566040 TDRD3Q9H7E2 651 aaKnown RBP12.12□□□□□ -0.47
CLN3-220ENST00000566040 ZNF70Q9UC06 446 aaPredicted RBP12.12□□□□□ -0.47
CLN3-220ENST00000566040 ATRNL1Q5VV63 1379 aa12.12□□□□□ -0.47
CLN3-220ENST00000566040 BAZ2AQ9UIF9 1905 aaKnown RBP12.11□□□□□ -0.47
CLN3-220ENST00000566040 RASSF10A6NK89 507 aa12.11□□□□□ -0.47
CLN3-220ENST00000566040 CACNB3P54284 484 aa12.11□□□□□ -0.47
CLN3-220ENST00000566040 MECOMQ03112 1051 aa12.11□□□□□ -0.47
CLN3-220ENST00000566040 HDAC1Q13547 482 aaPredicted RBP12.11□□□□□ -0.47
CLN3-220ENST00000566040 DLGAP5Q15398 846 aa12.11□□□□□ -0.47
CLN3-220ENST00000566040 HHIPL2Q6UWX4 724 aa12.11□□□□□ -0.47
CLN3-220ENST00000566040 MOB2Q70IA6 237 aa12.11□□□□□ -0.47
CLN3-220ENST00000566040 OGFOD1Q8N543 542 aa12.11□□□□□ -0.47
CLN3-220ENST00000566040 NSUN4Q96CB9 384 aaKnown RBP12.11□□□□□ -0.47
CLN3-220ENST00000566040 EDC3Q96F86 508 aaKnown RBP12.11□□□□□ -0.47
CLN3-220ENST00000566040 HDAC9Q9UKV0 1011 aa12.11□□□□□ -0.47
CLN3-220ENST00000566040 FZD1Q9UP38 647 aa12.11□□□□□ -0.47
CLN3-220ENST00000566040 TLL2Q9Y6L7 1015 aa12.11□□□□□ -0.47
CLN3-220ENST00000566040 DOCK1Q14185 1865 aa12.1□□□□□ -0.47
CLN3-220ENST00000566040 TMEM88BA6NKF7 163 aa12.1□□□□□ -0.47
CLN3-220ENST00000566040 CELF2O95319 508 aaKnown RBP12.1□□□□□ -0.47
CLN3-220ENST00000566040 CHGBP05060 677 aa12.1□□□□□ -0.47
CLN3-220ENST00000566040 UQCRFS1P1P0C7P4 283 aa12.1□□□□□ -0.47
CLN3-220ENST00000566040 RHBDL3P58872 404 aa12.1□□□□□ -0.47
CLN3-220ENST00000566040 NFIAQ12857 509 aa12.1□□□□□ -0.47
CLN3-220ENST00000566040 HSP90AB4PQ58FF6 505 aa12.1□□□□□ -0.47
CLN3-220ENST00000566040 SAPCD2Q86UD0 394 aa12.1□□□□□ -0.47
CLN3-220ENST00000566040 GNL3LQ9NVN8 582 aaKnown RBP12.1□□□□□ -0.47
CLN3-220ENST00000566040 MROH7-TTC4A0A0A0MT08 1334 aa12.1□□□□□ -0.47
CLN3-220ENST00000566040 RPAP1Q9BWH6 1393 aaPredicted RBP12.09□□□□□ -0.47
CLN3-220ENST00000566040 FRAT2O75474 233 aaPredicted RBP12.09□□□□□ -0.47
CLN3-220ENST00000566040 LDHBP07195 334 aaKnown RBP12.09□□□□□ -0.47
CLN3-220ENST00000566040 TTC39AQ5SRH9 613 aa12.09□□□□□ -0.47
CLN3-220ENST00000566040 TSHZ3Q63HK5 1081 aa12.09□□□□□ -0.47
CLN3-220ENST00000566040 CDC42EP5Q6NZY7 148 aa12.09□□□□□ -0.47
CLN3-220ENST00000566040 SMC5Q8IY18 1101 aa12.09□□□□□ -0.47
CLN3-220ENST00000566040 TEKT1Q969V4 418 aa12.09□□□□□ -0.47
CLN3-220ENST00000566040 DCPSQ96C86 337 aaKnown RBP12.09□□□□□ -0.47
CLN3-220ENST00000566040 KLRG1Q96E93 195 aa12.09□□□□□ -0.47
CLN3-220ENST00000566040 FAM163AQ96GL9 167 aaPredicted RBP12.09□□□□□ -0.47
CLN3-220ENST00000566040 LRRCC1Q9C099 1032 aa12.09□□□□□ -0.47
CLN3-220ENST00000566040 FAM198AQ9UFP1 575 aa12.09□□□□□ -0.47
CLN3-220ENST00000566040 WDHD1O75717 1129 aaPredicted RBP12.08□□□□□ -0.48
CLN3-220ENST00000566040 SLFNL1Q499Z3 407 aa12.08□□□□□ -0.48
CLN3-220ENST00000566040 NBPF12Q5TAG4 269 aaPredicted RBP12.08□□□□□ -0.48
CLN3-220ENST00000566040 SH3BP5LQ7L8J4 393 aa12.08□□□□□ -0.48
CLN3-220ENST00000566040 APOBEC3FQ8IUX4 373 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms