RNA–Protein interactions for RNA: ENST00000564255.5

CHD9-209, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 2,896 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-209ENST00000564255 LRRC14Q15048 493 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 RBBP8NLQ8NC74 664 aaPredicted RBP3.84□□□□□ -1.79
CHD9-209ENST00000564255 FBXO27Q8NI29 283 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 STK35Q8TDR2 534 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 HNRNPLLQ8WVV9 542 aaKnown RBP3.84□□□□□ -1.79
CHD9-209ENST00000564255 TRERF1Q96PN7 1200 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 EMILIN2Q9BXX0 1053 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 RBAK-RBAKDNI3L0D1 243 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 ZNF252P-AS1Q0IIN9 211 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 PERM1Q5SV97 790 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 CEP135Q66GS9 1140 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 FOXR1Q6PIV2 292 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 Q6ZNB5 142 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 ZNF662Q6ZS27 426 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 SV2AQ7L0J3 742 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 REXO1Q8N1G1 1221 aaKnown RBP3.84□□□□□ -1.79
CHD9-209ENST00000564255 GAL3ST3Q96A11 431 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 MSRB2Q9Y3D2 182 aa3.84□□□□□ -1.79
CHD9-209ENST00000564255 ANKRD62A6NC57 917 aa3.84□□□□□ -1.8
CHD9-209ENST00000564255 ENPP3O14638 875 aa3.84□□□□□ -1.8
CHD9-209ENST00000564255 ESRRAP11474 423 aaPredicted RBP3.84□□□□□ -1.8
CHD9-209ENST00000564255 PTPRAP18433 802 aa3.84□□□□□ -1.8
CHD9-209ENST00000564255 EIF2AK2P19525 551 aaKnown RBP3.84□□□□□ -1.8
CHD9-209ENST00000564255 SEZ6Q53EL9 994 aa3.84□□□□□ -1.8
CHD9-209ENST00000564255 TNNI3KQ59H18 835 aa3.84□□□□□ -1.8
CHD9-209ENST00000564255 SULF2Q8IWU5 870 aa3.84□□□□□ -1.8
CHD9-209ENST00000564255 CACTIN-AS1Q8N1I8 211 aa3.84□□□□□ -1.8
CHD9-209ENST00000564255 LPIN3Q9BQK8 851 aa3.84□□□□□ -1.8
CHD9-209ENST00000564255 CCDC113Q9H0I3 377 aa3.84□□□□□ -1.8
CHD9-209ENST00000564255 MIR1-1HGQ9H1L0 117 aa3.84□□□□□ -1.8
CHD9-209ENST00000564255 MRVI1Q9Y6F6 885 aa3.84□□□□□ -1.8
CHD9-209ENST00000564255 SBNO2Q9Y2G9 1366 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 SMAD7O15105 426 aaKnown RBP3.83□□□□□ -1.8
CHD9-209ENST00000564255 ARAFP10398 606 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 RASA3Q14644 834 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 TCEAL1Q15170 157 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 PDZD3Q86UT5 571 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 VWA5B2Q8N398 1253 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 PLD4Q96BZ4 506 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 SOX17Q9H6I2 414 aaPredicted RBP3.83□□□□□ -1.8
CHD9-209ENST00000564255 EHMT1Q9H9B1 1298 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 NAGPAQ9UK23 515 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 PRR12Q9ULL5 1215 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 HSD3B2P26439 372 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 ZNF165P49910 485 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 SEPT6Q14141 434 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 KANK3Q6NY19 840 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 GRIN3AQ8TCU5 1115 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 CPLX3Q8WVH0 158 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 SNTG2Q9NY99 539 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 GMPR2Q9P2T1 348 aaKnown RBP3.83□□□□□ -1.8
CHD9-209ENST00000564255 ZNRF3Q9ULT6 936 aa3.83□□□□□ -1.8
CHD9-209ENST00000564255 GPR25O00155 361 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 TLR3O15455 904 aaKnown RBP3.82□□□□□ -1.8
CHD9-209ENST00000564255 TRIM37O94972 964 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 ATE1O95260 518 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 BMP4P12644 408 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 CPB1P15086 417 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 ZNF157P51786 506 aaPredicted RBP3.82□□□□□ -1.8
CHD9-209ENST00000564255 EIF6P56537 245 aaKnown RBP3.82□□□□□ -1.8
CHD9-209ENST00000564255 LLGL2Q6P1M3 1020 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 FAM35AQ86V20 835 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 SNRPBP14678 240 aaKnown RBP3.82□□□□□ -1.8
CHD9-209ENST00000564255 SELPP16109 830 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 RPL6Q02878 288 aaKnown RBP3.82□□□□□ -1.8
CHD9-209ENST00000564255 CLCQ05315 142 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 GRIK5Q16478 980 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 CWF19L2Q2TBE0 894 aaKnown RBP3.82□□□□□ -1.8
CHD9-209ENST00000564255 CCDC81Q6ZN84 652 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 REC114Q7Z4M0 266 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 MICALL1Q8N3F8 863 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 JARID2Q92833 1246 aaPredicted RBP3.82□□□□□ -1.8
CHD9-209ENST00000564255 ANAPC16Q96DE5 110 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 RNPC3Q96LT9 517 aaKnown RBP3.82□□□□□ -1.8
CHD9-209ENST00000564255 TRIM55Q9BYV6 548 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 SMG9Q9H0W8 520 aaKnown RBP3.82□□□□□ -1.8
CHD9-209ENST00000564255 BRMS1Q9HCU9 246 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 PPT2Q9UMR5 302 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 TRIM33Q9UPN9 1127 aa3.82□□□□□ -1.8
CHD9-209ENST00000564255 IMPDH2P12268 514 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 CDC27P30260 824 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 ADH7P40394 386 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 CASP7P55210 303 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 AP3B2Q13367 1082 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 GAS6Q14393 721 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 FAM169BQ8N8A8 192 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 DEPDC7Q96QD5 511 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 IGFLR1Q9H665 355 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 SH2B1Q9NRF2 756 aaPredicted RBP3.81□□□□□ -1.8
CHD9-209ENST00000564255 POLR3KQ9Y2Y1 108 aaPredicted RBP3.81□□□□□ -1.8
CHD9-209ENST00000564255 MRPL42Q9Y6G3 142 aaKnown RBP3.81□□□□□ -1.8
CHD9-209ENST00000564255 SOX1O00570 391 aaPredicted RBP3.81□□□□□ -1.8
CHD9-209ENST00000564255 ELMSAN1Q6PJG2 1045 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 LSRQ86X29 649 aaPredicted RBP3.81□□□□□ -1.8
CHD9-209ENST00000564255 SRPK1Q96SB4 655 aaKnown RBP3.81□□□□□ -1.8
CHD9-209ENST00000564255 FAM221BA6H8Z2 402 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 U2SURPO15042 1029 aaKnown RBP3.81□□□□□ -1.8
CHD9-209ENST00000564255 LMNB1P20700 586 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 MAP2K3P46734 347 aa3.81□□□□□ -1.8
CHD9-209ENST00000564255 PCBP4P57723 403 aaKnown RBP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms