RNA–Protein interactions for RNA: ENST00000563917.2

CLN6-203, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-203ENST00000563917 GPR25O00155 361 aa11.93□□□□□ -0.5
CLN6-203ENST00000563917 HDLBPQ00341 1268 aaKnown RBP11.93□□□□□ -0.5
CLN6-203ENST00000563917 SPDYE2Q495Y8 402 aa11.93□□□□□ -0.5
CLN6-203ENST00000563917 NBPF12Q5TAG4 269 aaPredicted RBP11.93□□□□□ -0.5
CLN6-203ENST00000563917 FBXO33Q7Z6M2 555 aa11.93□□□□□ -0.5
CLN6-203ENST00000563917 ANKRD44Q8N8A2 993 aa11.93□□□□□ -0.5
CLN6-203ENST00000563917 WNK4Q96J92 1243 aa11.93□□□□□ -0.5
CLN6-203ENST00000563917 GNL3LQ9NVN8 582 aaKnown RBP11.93□□□□□ -0.5
CLN6-203ENST00000563917 PCDHAC2Q9Y5I4 1007 aa11.93□□□□□ -0.5
CLN6-203ENST00000563917 KIF16BQ96L93 1317 aa11.92□□□□□ -0.5
CLN6-203ENST00000563917 TCP10L2B9ZVM9 353 aa11.92□□□□□ -0.5
CLN6-203ENST00000563917 EYA2O00167 538 aa11.92□□□□□ -0.5
CLN6-203ENST00000563917 WDHD1O75717 1129 aaPredicted RBP11.92□□□□□ -0.5
CLN6-203ENST00000563917 IFNL1Q8IU54 200 aa11.92□□□□□ -0.5
CLN6-203ENST00000563917 WDR66Q8TBY9 1149 aa11.92□□□□□ -0.5
CLN6-203ENST00000563917 LPIN2Q92539 896 aa11.92□□□□□ -0.5
CLN6-203ENST00000563917 FZD1Q9UP38 647 aa11.92□□□□□ -0.5
CLN6-203ENST00000563917 SUGT1Q9Y2Z0 365 aa11.92□□□□□ -0.5
CLN6-203ENST00000563917 CSADQ9Y600 493 aa11.92□□□□□ -0.5
CLN6-203ENST00000563917 USP2O75604 605 aaPredicted RBP11.91□□□□□ -0.5
CLN6-203ENST00000563917 BCAMP50895 628 aa11.91□□□□□ -0.5
CLN6-203ENST00000563917 KLHDC4Q8TBB5 520 aa11.91□□□□□ -0.5
CLN6-203ENST00000563917 CDCA7LQ96GN5 454 aa11.91□□□□□ -0.5
CLN6-203ENST00000563917 CLMNQ96JQ2 1002 aa11.91□□□□□ -0.5
CLN6-203ENST00000563917 CFHR5Q9BXR6 569 aa11.91□□□□□ -0.5
CLN6-203ENST00000563917 CEP126Q9P2H0 1117 aa11.91□□□□□ -0.5
CLN6-203ENST00000563917 FBXO3Q9UK99 471 aa11.91□□□□□ -0.5
CLN6-203ENST00000563917 CCER2I3L3R5 266 aa11.9□□□□□ -0.5
CLN6-203ENST00000563917 SOX10P56693 466 aa11.9□□□□□ -0.5
CLN6-203ENST00000563917 FBXO46Q6PJ61 603 aaPredicted RBP11.9□□□□□ -0.5
CLN6-203ENST00000563917 VGLL2Q8N8G2 317 aa11.9□□□□□ -0.5
CLN6-203ENST00000563917 MRIQ9BWK5 157 aa11.9□□□□□ -0.5
CLN6-203ENST00000563917 ELP3Q9H9T3 547 aa11.9□□□□□ -0.5
CLN6-203ENST00000563917 NOB1Q9ULX3 412 aaKnown RBP11.9□□□□□ -0.5
CLN6-203ENST00000563917 HPS5Q9UPZ3 1129 aa11.9□□□□□ -0.5
CLN6-203ENST00000563917 MAP3K9P80192 1104 aa11.89□□□□□ -0.51
CLN6-203ENST00000563917 ARHGEF6Q15052 776 aa11.89□□□□□ -0.51
CLN6-203ENST00000563917 ATP2B3Q16720 1220 aa11.89□□□□□ -0.51
CLN6-203ENST00000563917 DCAF15Q66K64 600 aa11.89□□□□□ -0.51
CLN6-203ENST00000563917 OPTNQ96CV9 577 aa11.89□□□□□ -0.51
CLN6-203ENST00000563917 ERO1AQ96HE7 468 aa11.89□□□□□ -0.51
CLN6-203ENST00000563917 ZDHHC15Q96MV8 337 aa11.89□□□□□ -0.51
CLN6-203ENST00000563917 TMEM39BQ9GZU3 492 aa11.89□□□□□ -0.51
CLN6-203ENST00000563917 SIL1Q9H173 461 aa11.89□□□□□ -0.51
CLN6-203ENST00000563917 ARAP2Q8WZ64 1704 aa11.89□□□□□ -0.51
CLN6-203ENST00000563917 IPO8O15397 1037 aaKnown RBP11.88□□□□□ -0.51
CLN6-203ENST00000563917 CIAO1O76071 339 aa11.88□□□□□ -0.51
CLN6-203ENST00000563917 GNAI3P08754 354 aa11.88□□□□□ -0.51
CLN6-203ENST00000563917 IL15P40933 162 aaPredicted RBP11.88□□□□□ -0.51
CLN6-203ENST00000563917 GTF2A2P52657 109 aa11.88□□□□□ -0.51
CLN6-203ENST00000563917 FKBP1CQ5VVH2 108 aa11.88□□□□□ -0.51
CLN6-203ENST00000563917 HHIPL2Q6UWX4 724 aa11.88□□□□□ -0.51
CLN6-203ENST00000563917 FAM83AQ86UY5 434 aa11.88□□□□□ -0.51
CLN6-203ENST00000563917 SSC5DA1L4H1 1573 aa11.88□□□□□ -0.51
CLN6-203ENST00000563917 AOX1Q06278 1338 aa11.87□□□□□ -0.51
CLN6-203ENST00000563917 LDHBP07195 334 aaKnown RBP11.87□□□□□ -0.51
CLN6-203ENST00000563917 FGFR2P21802 821 aa11.87□□□□□ -0.51
CLN6-203ENST00000563917 TRMT2AQ8IZ69 625 aaKnown RBP11.87□□□□□ -0.51
CLN6-203ENST00000563917 ZGPATQ8N5A5 531 aaKnown RBP11.87□□□□□ -0.51
CLN6-203ENST00000563917 DENND2AQ9ULE3 1009 aa11.87□□□□□ -0.51
CLN6-203ENST00000563917 TRIM17Q9Y577 477 aa11.87□□□□□ -0.51
CLN6-203ENST00000563917 LRRFIP2Q9Y608 721 aaKnown RBP11.87□□□□□ -0.51
CLN6-203ENST00000563917 CCL15-CCL14A0A0B4J2E2 113 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 IGF2BP3O00425 579 aaKnown RBP eCLIP11.86□□□□□ -0.51
CLN6-203ENST00000563917 SEMA3EO15041 775 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 RFX5P48382 616 aaPredicted RBP11.86□□□□□ -0.51
CLN6-203ENST00000563917 CACNB3P54284 484 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 GRIK5Q16478 980 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 CCL15Q16663 113 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 SLF2Q8IX21 1173 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 ARHGAP45Q92619 1136 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 OTUD5Q96G74 571 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 TEPSINQ96N21 525 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 WRNIP1Q96S55 665 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 ZFYVE28Q9HCC9 887 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 AKAP2Q9Y2D5 859 aa11.86□□□□□ -0.51
CLN6-203ENST00000563917 TESPA1A2RU30 521 aaPredicted RBP11.85□□□□□ -0.51
CLN6-203ENST00000563917 RARSP54136 660 aaKnown RBP11.85□□□□□ -0.51
CLN6-203ENST00000563917 SP3Q02447 781 aa11.85□□□□□ -0.51
CLN6-203ENST00000563917 CRHR2Q13324 411 aa11.85□□□□□ -0.51
CLN6-203ENST00000563917 VGLL4Q14135 290 aa11.85□□□□□ -0.51
CLN6-203ENST00000563917 TAF1CQ15572 869 aaPredicted RBP11.85□□□□□ -0.51
CLN6-203ENST00000563917 INTS3Q68E01 1043 aaKnown RBP11.85□□□□□ -0.51
CLN6-203ENST00000563917 APOBEC3HQ6NTF7 200 aaKnown RBP11.85□□□□□ -0.51
CLN6-203ENST00000563917 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.85□□□□□ -0.51
CLN6-203ENST00000563917 ATG9AQ7Z3C6 839 aa11.85□□□□□ -0.51
CLN6-203ENST00000563917 ERO1BQ86YB8 467 aa11.85□□□□□ -0.51
CLN6-203ENST00000563917 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLN6-203ENST00000563917 ZNF341Q9BYN7 854 aa11.85□□□□□ -0.51
CLN6-203ENST00000563917 R3HDMLQ9H3Y0 253 aa11.85□□□□□ -0.51
CLN6-203ENST00000563917 EFCC1Q9HA90 598 aa11.85□□□□□ -0.51
CLN6-203ENST00000563917 SRGAP3O43295 1099 aa11.84□□□□□ -0.51
CLN6-203ENST00000563917 CETPP11597 493 aa11.84□□□□□ -0.51
CLN6-203ENST00000563917 GJA5P36382 358 aa11.84□□□□□ -0.51
CLN6-203ENST00000563917 SNAPC2Q13487 334 aa11.84□□□□□ -0.51
CLN6-203ENST00000563917 KIF22Q14807 665 aa11.84□□□□□ -0.51
CLN6-203ENST00000563917 GORABQ5T7V8 394 aa11.84□□□□□ -0.51
CLN6-203ENST00000563917 SPTY2D1Q68D10 685 aaPredicted RBP11.84□□□□□ -0.51
CLN6-203ENST00000563917 OTOP1Q7RTM1 612 aa11.84□□□□□ -0.51
CLN6-203ENST00000563917 FAM151AQ8WW52 585 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms