RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 SUPT20HL1Q3ZLR7 823 aa13.31□□□□□ -0.28
SF3B3-204ENST00000563739 SLC9C1Q4G0N8 1177 aa13.31□□□□□ -0.28
SF3B3-204ENST00000563739 CHRDL2Q6WN34 429 aa13.31□□□□□ -0.28
SF3B3-204ENST00000563739 ZNF594Q96JF6 807 aaPredicted RBP13.31□□□□□ -0.28
SF3B3-204ENST00000563739 SPDYE5A6NIY4 337 aa13.3□□□□□ -0.28
SF3B3-204ENST00000563739 BTBD19C9JJ37 291 aa13.3□□□□□ -0.28
SF3B3-204ENST00000563739 FLIIQ13045 1269 aa13.3□□□□□ -0.28
SF3B3-204ENST00000563739 MOGSQ13724 837 aa13.3□□□□□ -0.28
SF3B3-204ENST00000563739 SLC17A8Q8NDX2 589 aa13.3□□□□□ -0.28
SF3B3-204ENST00000563739 TDRD7Q8NHU6 1098 aaKnown RBP13.3□□□□□ -0.28
SF3B3-204ENST00000563739 MPHOSPH8Q99549 860 aa13.3□□□□□ -0.28
SF3B3-204ENST00000563739 PHIPQ8WWQ0 1821 aa13.29□□□□□ -0.28
SF3B3-204ENST00000563739 LACTBP83111 547 aaPredicted RBP13.29□□□□□ -0.28
SF3B3-204ENST00000563739 NEXNQ0ZGT2 675 aa13.29□□□□□ -0.28
SF3B3-204ENST00000563739 LINS1Q8NG48 757 aa13.29□□□□□ -0.28
SF3B3-204ENST00000563739 MYH13Q9UKX3 1938 aa13.29□□□□□ -0.28
SF3B3-204ENST00000563739 SOX1O00570 391 aaPredicted RBP13.28□□□□□ -0.28
SF3B3-204ENST00000563739 TLR2O60603 784 aa13.28□□□□□ -0.28
SF3B3-204ENST00000563739 KCNJ4P48050 445 aa13.28□□□□□ -0.28
SF3B3-204ENST00000563739 CACNB3P54284 484 aa13.28□□□□□ -0.28
SF3B3-204ENST00000563739 DDX10Q13206 875 aaKnown RBP13.28□□□□□ -0.28
SF3B3-204ENST00000563739 OTUD7BQ6GQQ9 843 aa13.28□□□□□ -0.28
SF3B3-204ENST00000563739 ZNF804AQ7Z570 1209 aa13.28□□□□□ -0.28
SF3B3-204ENST00000563739 DZIP1LQ8IYY4 767 aaKnown RBP13.28□□□□□ -0.28
SF3B3-204ENST00000563739 DNAAF4Q8WXU2 420 aa13.28□□□□□ -0.28
SF3B3-204ENST00000563739 KAZALD1Q96I82 304 aa13.28□□□□□ -0.28
SF3B3-204ENST00000563739 TMEM106CQ9BVX2 250 aa13.28□□□□□ -0.28
SF3B3-204ENST00000563739 SERPINA10Q9UK55 444 aa13.28□□□□□ -0.28
SF3B3-204ENST00000563739 ANKRD18BA2A2Z9 1011 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 TCP10L2B9ZVM9 353 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 SLC4A2P04920 1241 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 CRKP46108 304 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 GYG1P46976 350 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 GTF2A2P52657 109 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 MAP3K9P80192 1104 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 TWISTNBQ3B726 338 aaPredicted RBP13.27□□□□□ -0.29
SF3B3-204ENST00000563739 CCDC184Q52MB2 194 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 MFSD14BQ5SR56 506 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 BEND3Q5T5X7 828 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 C17orf99Q6UX52 265 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 FAM84BQ96KN1 310 aaPredicted RBP13.27□□□□□ -0.29
SF3B3-204ENST00000563739 TRIM47Q96LD4 638 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 PUS3Q9BZE2 481 aaKnown RBP13.27□□□□□ -0.29
SF3B3-204ENST00000563739 PRKRIP1Q9H875 184 aaPredicted RBP13.27□□□□□ -0.29
SF3B3-204ENST00000563739 ZFYVE28Q9HCC9 887 aa13.27□□□□□ -0.29
SF3B3-204ENST00000563739 TTF2Q9UNY4 1162 aaKnown RBP13.27□□□□□ -0.29
SF3B3-204ENST00000563739 UNC80Q8N2C7 3258 aa13.26□□□□□ -0.29
SF3B3-204ENST00000563739 IRF6O14896 467 aa13.26□□□□□ -0.29
SF3B3-204ENST00000563739 MYO1BO43795 1136 aa13.26□□□□□ -0.29
SF3B3-204ENST00000563739 SLC4A8Q2Y0W8 1093 aa13.26□□□□□ -0.29
SF3B3-204ENST00000563739 LMBR1LQ6UX01 489 aa13.26□□□□□ -0.29
SF3B3-204ENST00000563739 DOCK2Q92608 1830 aa13.26□□□□□ -0.29
SF3B3-204ENST00000563739 ZKSCAN4Q969J2 545 aaPredicted RBP13.26□□□□□ -0.29
SF3B3-204ENST00000563739 RPAP1Q9BWH6 1393 aaPredicted RBP13.26□□□□□ -0.29
SF3B3-204ENST00000563739 F6X3S4 739 aa13.25□□□□□ -0.29
SF3B3-204ENST00000563739 CALD1Q05682 793 aaKnown RBP13.25□□□□□ -0.29
SF3B3-204ENST00000563739 ZCCHC17Q9NP64 241 aaKnown RBP13.25□□□□□ -0.29
SF3B3-204ENST00000563739 DOCK3Q8IZD9 2030 aa13.25□□□□□ -0.29
SF3B3-204ENST00000563739 ATRNL1Q5VV63 1379 aa13.24□□□□□ -0.29
SF3B3-204ENST00000563739 FANCIQ9NVI1 1328 aa13.24□□□□□ -0.29
SF3B3-204ENST00000563739 ECM2O94769 699 aaPredicted RBP13.24□□□□□ -0.29
SF3B3-204ENST00000563739 OSBPP22059 807 aa13.24□□□□□ -0.29
SF3B3-204ENST00000563739 RBM5P52756 815 aaKnown RBP eCLIP13.24□□□□□ -0.29
SF3B3-204ENST00000563739 IFIT5Q13325 482 aaKnown RBP13.24□□□□□ -0.29
SF3B3-204ENST00000563739 TNFAIP1Q13829 316 aa13.24□□□□□ -0.29
SF3B3-204ENST00000563739 STK31Q9BXU1 1019 aa13.24□□□□□ -0.29
SF3B3-204ENST00000563739 MYH16Q9H6N6 1097 aa13.24□□□□□ -0.29
SF3B3-204ENST00000563739 SRRDQ9UH36 339 aa13.24□□□□□ -0.29
SF3B3-204ENST00000563739 PLXNB2O15031 1838 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 INPP5BP32019 993 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 GJA8P48165 433 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 PPIL2Q13356 520 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 FKBP5Q13451 457 aaPredicted RBP13.23□□□□□ -0.29
SF3B3-204ENST00000563739 CCDC27Q2M243 656 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 APOBEC3HQ6NTF7 200 aaKnown RBP13.23□□□□□ -0.29
SF3B3-204ENST00000563739 FBXO33Q7Z6M2 555 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 NBPF11Q86T75 865 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 ERO1BQ86YB8 467 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 POTEDQ86YR6 584 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 WWC1Q8IX03 1113 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 VGLL2Q8N8G2 317 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 WRNIP1Q96S55 665 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 CPA4Q9UI42 421 aa13.23□□□□□ -0.29
SF3B3-204ENST00000563739 IQSEC3Q9UPP2 1182 aaPredicted RBP13.23□□□□□ -0.29
SF3B3-204ENST00000563739 SPTBN5Q9NRC6 3674 aaKnown RBP13.23□□□□□ -0.29
SF3B3-204ENST00000563739 ZBTB7BO15156 539 aaPredicted RBP13.22□□□□□ -0.29
SF3B3-204ENST00000563739 PLIN1O60240 522 aa13.22□□□□□ -0.29
SF3B3-204ENST00000563739 VAMP4O75379 141 aa13.22□□□□□ -0.29
SF3B3-204ENST00000563739 BCRP11274 1271 aa13.22□□□□□ -0.29
SF3B3-204ENST00000563739 CETPP11597 493 aa13.22□□□□□ -0.29
SF3B3-204ENST00000563739 UBE4AQ14139 1066 aa13.22□□□□□ -0.29
SF3B3-204ENST00000563739 LRCH3Q96II8 777 aa13.22□□□□□ -0.29
SF3B3-204ENST00000563739 KCNH4Q9UQ05 1017 aa13.22□□□□□ -0.29
SF3B3-204ENST00000563739 RIPOR2Q9Y4F9 1068 aa13.22□□□□□ -0.29
SF3B3-204ENST00000563739 RFX7Q2KHR2 1363 aa13.21□□□□□ -0.29
SF3B3-204ENST00000563739 DOCK1Q14185 1865 aa13.21□□□□□ -0.29
SF3B3-204ENST00000563739 GJB1P08034 283 aa13.21□□□□□ -0.29
SF3B3-204ENST00000563739 CCL5P13501 91 aa13.21□□□□□ -0.29
SF3B3-204ENST00000563739 HIBADHP31937 336 aaKnown RBP13.21□□□□□ -0.29
SF3B3-204ENST00000563739 GPAT2Q6NUI2 795 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms