RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 RFX7Q2KHR2 1363 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 MED23Q9ULK4 1368 aa10.73□□□□□ -0.69
VPS39-207ENST00000563692 TRAF5O00463 557 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 HSPA1AP0DMV8 641 aaKnown RBP10.72□□□□□ -0.69
VPS39-207ENST00000563692 HSPA1BP0DMV9 641 aaKnown RBP10.72□□□□□ -0.69
VPS39-207ENST00000563692 HSPA4P34932 840 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 ECE1P42892 770 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 MCM2P49736 904 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 TTF1Q15361 905 aaPredicted RBP10.72□□□□□ -0.69
VPS39-207ENST00000563692 KIF4BQ2VIQ3 1234 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 TBC1D10BQ4KMP7 808 aaPredicted RBP10.72□□□□□ -0.69
VPS39-207ENST00000563692 RBM26Q5T8P6 1007 aaKnown RBP10.72□□□□□ -0.69
VPS39-207ENST00000563692 RSBN1LQ6PCB5 846 aaPredicted RBP10.72□□□□□ -0.69
VPS39-207ENST00000563692 SAMD7Q7Z3H4 446 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 KBTBD3Q8NAB2 608 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 AGBL3Q8NEM8 1001 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 FBXW7Q969H0 707 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 DCPSQ96C86 337 aaKnown RBP10.72□□□□□ -0.69
VPS39-207ENST00000563692 COA1Q9GZY4 146 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 ZNF408Q9H9D4 720 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 ZNF804BA4D1E1 1349 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 ZNF609O15014 1411 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 LTBP1Q14766 1721 aa10.72□□□□□ -0.69
VPS39-207ENST00000563692 SHTN1A0MZ66 631 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 RASSF10A6NK89 507 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 GOLIM4O00461 696 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 CELF2O95319 508 aaKnown RBP10.71□□□□□ -0.69
VPS39-207ENST00000563692 COL4A1P02462 1669 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 ZFYP08048 801 aaPredicted RBP10.71□□□□□ -0.69
VPS39-207ENST00000563692 USP17L8P0C7I0 530 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 CHRNDQ07001 517 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 NMIQ13287 307 aaPredicted RBP10.71□□□□□ -0.69
VPS39-207ENST00000563692 MCMDC2Q4G0Z9 681 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 ZSCAN25Q6NSZ9 544 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 KRT26Q7Z3Y9 468 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 SULF1Q8IWU6 871 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 OGFOD1Q8N543 542 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 ADAMTSL1Q8N6G6 1762 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 VGLL2Q8N8G2 317 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 GLIS2Q9BZE0 524 aaPredicted RBP10.71□□□□□ -0.69
VPS39-207ENST00000563692 LSG1Q9H089 658 aaKnown RBP10.71□□□□□ -0.69
VPS39-207ENST00000563692 KCNQ5Q9NR82 932 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 SNRKQ9NRH2 765 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 HELLSQ9NRZ9 838 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 PGAP2Q9UHJ9 254 aa10.71□□□□□ -0.69
VPS39-207ENST00000563692 MYO3BQ8WXR4 1341 aa10.7□□□□□ -0.7
VPS39-207ENST00000563692 HSP90AA1P07900 732 aaKnown RBP10.7□□□□□ -0.7
VPS39-207ENST00000563692 ZKSCAN1P17029 563 aaPredicted RBP10.7□□□□□ -0.7
VPS39-207ENST00000563692 VEGFBP49765 207 aa10.7□□□□□ -0.7
VPS39-207ENST00000563692 HIRAP54198 1017 aaPredicted RBP10.7□□□□□ -0.7
VPS39-207ENST00000563692 GRM1Q13255 1194 aa10.7□□□□□ -0.7
VPS39-207ENST00000563692 RNF20Q5VTR2 975 aa10.7□□□□□ -0.7
VPS39-207ENST00000563692 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.7□□□□□ -0.71e-6■■■■■ 30.3
VPS39-207ENST00000563692 WDR33Q9C0J8 1336 aaKnown RBP10.69□□□□□ -0.7
VPS39-207ENST00000563692 K7ELQ4 463 aaPredicted RBP10.69□□□□□ -0.7
VPS39-207ENST00000563692 RNF113AO15541 343 aaKnown RBP10.69□□□□□ -0.7
VPS39-207ENST00000563692 FGFR2P21802 821 aa10.69□□□□□ -0.7
VPS39-207ENST00000563692 ADORA1P30542 326 aa10.69□□□□□ -0.7
VPS39-207ENST00000563692 ZNF280AP59817 542 aaPredicted RBP10.69□□□□□ -0.7
VPS39-207ENST00000563692 STRIP1Q5VSL9 837 aa10.69□□□□□ -0.7
VPS39-207ENST00000563692 CST9Q5W186 159 aa10.69□□□□□ -0.7
VPS39-207ENST00000563692 USP48Q86UV5 1035 aa10.69□□□□□ -0.7
VPS39-207ENST00000563692 IL17RAQ96F46 866 aa10.69□□□□□ -0.7
VPS39-207ENST00000563692 FAM227BQ96M60 508 aa10.69□□□□□ -0.7
VPS39-207ENST00000563692 BEGAINQ9BUH8 593 aa10.69□□□□□ -0.7
VPS39-207ENST00000563692 GNL3LQ9NVN8 582 aaKnown RBP10.69□□□□□ -0.7
VPS39-207ENST00000563692 TLL2Q9Y6L7 1015 aa10.69□□□□□ -0.7
VPS39-207ENST00000563692 MYH3P11055 1940 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 CCDC171Q6TFL3 1326 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 MMP14P50281 582 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 NEK4P51957 841 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 MAP2K1Q02750 393 aaPredicted RBP10.68□□□□□ -0.7
VPS39-207ENST00000563692 FMR1Q06787 632 aaKnown RBP eCLIP10.68□□□□□ -0.7
VPS39-207ENST00000563692 UBE4AQ14139 1066 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 CAVIN4Q5BKX8 364 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 CCDC102BQ68D86 513 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 TTLL5Q6EMB2 1281 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 ZNF804AQ7Z570 1209 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 HELBQ8NG08 1087 aaPredicted RBP10.68□□□□□ -0.7
VPS39-207ENST00000563692 MAP4K1Q92918 833 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 EDC3Q96F86 508 aaKnown RBP10.68□□□□□ -0.7
VPS39-207ENST00000563692 CAPNS2Q96L46 248 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 MYOZ2Q9NPC6 264 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 GGA3Q9NZ52 723 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 HDAC9Q9UKV0 1011 aa10.68□□□□□ -0.7
VPS39-207ENST00000563692 A0A0D9SFI3 127 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 WTIPA6NIX2 430 aaPredicted RBP10.67□□□□□ -0.7
VPS39-207ENST00000563692 TAF5LO75529 589 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 EGFRP00533 1210 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 PSMA5P28066 241 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 ARID4AP29374 1257 aaPredicted RBP10.67□□□□□ -0.7
VPS39-207ENST00000563692 ZAP70P43403 619 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 SCARF1Q14162 830 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 DACT2Q5SW24 774 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 IFFO2Q5TF58 517 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 SAPCD2Q86UD0 394 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 C2orf69Q8N8R5 385 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 CD209Q9NNX6 404 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 HMG20BQ9P0W2 317 aa10.67□□□□□ -0.7
VPS39-207ENST00000563692 U3KPZ7 1027 aaPredicted RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms