RNA–Protein interactions for RNA: ENST00000563366.5

UBFD1-202, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 3

Gene UBFD1, Length 709 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-202ENST00000563366 UQCRFS1P1P0C7P4 283 aa11.69□□□□□ -0.54
UBFD1-202ENST00000563366 EMP3P54852 163 aa11.69□□□□□ -0.54
UBFD1-202ENST00000563366 RABEP1Q15276 862 aa11.69□□□□□ -0.54
UBFD1-202ENST00000563366 DDX46Q7L014 1031 aaKnown RBP11.69□□□□□ -0.54
UBFD1-202ENST00000563366 KBTBD3Q8NAB2 608 aa11.69□□□□□ -0.54
UBFD1-202ENST00000563366 DNAJC2Q99543 621 aaKnown RBP11.69□□□□□ -0.54
UBFD1-202ENST00000563366 PAG1Q9NWQ8 432 aa11.69□□□□□ -0.54
UBFD1-202ENST00000563366 DOCK2Q92608 1830 aa11.69□□□□□ -0.54
UBFD1-202ENST00000563366 ZFYP08048 801 aaPredicted RBP11.68□□□□□ -0.54
UBFD1-202ENST00000563366 TTF1Q15361 905 aaPredicted RBP11.68□□□□□ -0.54
UBFD1-202ENST00000563366 PACS2Q86VP3 889 aa11.68□□□□□ -0.54
UBFD1-202ENST00000563366 AMIGO3Q86WK7 504 aa11.68□□□□□ -0.54
UBFD1-202ENST00000563366 ANKRD2Q9GZV1 360 aa11.68□□□□□ -0.54
UBFD1-202ENST00000563366 SEC31BQ9NQW1 1179 aa11.68□□□□□ -0.54
UBFD1-202ENST00000563366 SNRKQ9NRH2 765 aa11.68□□□□□ -0.54
UBFD1-202ENST00000563366 TAF1P21675 1872 aa11.68□□□□□ -0.54
UBFD1-202ENST00000563366 SERPINB2P05120 415 aa11.67□□□□□ -0.54
UBFD1-202ENST00000563366 FGFR2P21802 821 aa11.67□□□□□ -0.54
UBFD1-202ENST00000563366 TM4SF1P30408 202 aa11.67□□□□□ -0.54
UBFD1-202ENST00000563366 SSTR3P32745 418 aaPredicted RBP11.67□□□□□ -0.54
UBFD1-202ENST00000563366 BAG6P46379 1132 aa11.67□□□□□ -0.54
UBFD1-202ENST00000563366 ZSCAN25Q6NSZ9 544 aa11.67□□□□□ -0.54
UBFD1-202ENST00000563366 CWC27Q6UX04 472 aaKnown RBP11.67□□□□□ -0.54
UBFD1-202ENST00000563366 NUDT18Q6ZVK8 323 aa11.67□□□□□ -0.54
UBFD1-202ENST00000563366 HSCBQ8IWL3 235 aa11.67□□□□□ -0.54
UBFD1-202ENST00000563366 RPGRQ92834 1020 aaKnown RBP11.67□□□□□ -0.54
UBFD1-202ENST00000563366 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.67□□□□□ -0.54
UBFD1-202ENST00000563366 PNMA3Q9UL41 463 aa11.67□□□□□ -0.54
UBFD1-202ENST00000563366 ARID4AP29374 1257 aaPredicted RBP11.66□□□□□ -0.54
UBFD1-202ENST00000563366 RPS8P62241 208 aaKnown RBP11.66□□□□□ -0.54
UBFD1-202ENST00000563366 CHRNDQ07001 517 aa11.66□□□□□ -0.54
UBFD1-202ENST00000563366 UBE4AQ14139 1066 aa11.66□□□□□ -0.54
UBFD1-202ENST00000563366 PROX2Q3B8N5 592 aa11.66□□□□□ -0.54
UBFD1-202ENST00000563366 PRR5LQ6MZQ0 368 aa11.66□□□□□ -0.54
UBFD1-202ENST00000563366 SMIM5Q71RC9 77 aa11.66□□□□□ -0.54
UBFD1-202ENST00000563366 TMC4Q7Z404 712 aa11.66□□□□□ -0.54
UBFD1-202ENST00000563366 SNX21Q969T3 373 aa11.66□□□□□ -0.54
UBFD1-202ENST00000563366 MED23Q9ULK4 1368 aa11.66□□□□□ -0.54
UBFD1-202ENST00000563366 RCCD1A6NED2 376 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 GOLIM4O00461 696 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 PSEN2P49810 448 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 ZNF827Q17R98 1081 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 CRY2Q49AN0 593 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 CCDC102BQ68D86 513 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 TATDN2Q93075 761 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 MARVELD3Q96A59 401 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 IL17RAQ96F46 866 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 HELLSQ9NRZ9 838 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 FAM217BQ9NTX9 383 aaPredicted RBP11.65□□□□□ -0.54
UBFD1-202ENST00000563366 GNL3LQ9NVN8 582 aaKnown RBP11.65□□□□□ -0.54
UBFD1-202ENST00000563366 STK32BQ9NY57 414 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 LRRC37AA6NMS7 1700 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 ANKRD31Q8N7Z5 1873 aa11.65□□□□□ -0.54
UBFD1-202ENST00000563366 CCDC171Q6TFL3 1326 aa11.64□□□□□ -0.55
UBFD1-202ENST00000563366 DUOX1Q9NRD9 1551 aa11.64□□□□□ -0.55
UBFD1-202ENST00000563366 POLRMTO00411 1230 aaKnown RBP11.64□□□□□ -0.55
UBFD1-202ENST00000563366 ARHGAP33O14559 1287 aa11.64□□□□□ -0.55
UBFD1-202ENST00000563366 ADORA1P30542 326 aa11.64□□□□□ -0.55
UBFD1-202ENST00000563366 HSPA4P34932 840 aa11.64□□□□□ -0.55
UBFD1-202ENST00000563366 FKBP4Q02790 459 aaKnown RBP eCLIP11.64□□□□□ -0.55
UBFD1-202ENST00000563366 NMIQ13287 307 aaPredicted RBP11.64□□□□□ -0.55
UBFD1-202ENST00000563366 GRAPQ13588 217 aa11.64□□□□□ -0.55
UBFD1-202ENST00000563366 CAVIN4Q5BKX8 364 aa11.64□□□□□ -0.55
UBFD1-202ENST00000563366 RNF20Q5VTR2 975 aa11.64□□□□□ -0.55
UBFD1-202ENST00000563366 CCDC125Q86Z20 511 aa11.64□□□□□ -0.55
UBFD1-202ENST00000563366 GRAPLQ8TC17 118 aaPredicted RBP11.64□□□□□ -0.55
UBFD1-202ENST00000563366 RBM17Q96I25 401 aaKnown RBP11.64□□□□□ -0.55
UBFD1-202ENST00000563366 CAMKK2Q96RR4 588 aa11.64□□□□□ -0.55
UBFD1-202ENST00000563366 LSG1Q9H089 658 aaKnown RBP11.64□□□□□ -0.55
UBFD1-202ENST00000563366 PARP3Q9Y6F1 533 aa11.64□□□□□ -0.55
UBFD1-202ENST00000563366 PNPLA7Q6ZV29 1317 aa11.63□□□□□ -0.55
UBFD1-202ENST00000563366 IGSF3O75054 1194 aa11.63□□□□□ -0.55
UBFD1-202ENST00000563366 ZKSCAN1P17029 563 aaPredicted RBP11.63□□□□□ -0.55
UBFD1-202ENST00000563366 KCNJ4P48050 445 aa11.63□□□□□ -0.55
UBFD1-202ENST00000563366 MCM2P49736 904 aa11.63□□□□□ -0.55
UBFD1-202ENST00000563366 SLC15A2Q16348 729 aa11.63□□□□□ -0.55
UBFD1-202ENST00000563366 MCMDC2Q4G0Z9 681 aa11.63□□□□□ -0.55
UBFD1-202ENST00000563366 COL23A1Q86Y22 540 aaPredicted RBP11.63□□□□□ -0.55
UBFD1-202ENST00000563366 CELF1Q92879 486 aaKnown RBP11.63□□□□□ -0.55
UBFD1-202ENST00000563366 KIF2CQ99661 725 aa11.63□□□□□ -0.55
UBFD1-202ENST00000563366 ZBED2Q9BTP6 218 aa11.63□□□□□ -0.55
UBFD1-202ENST00000563366 HMG20BQ9P0W2 317 aa11.63□□□□□ -0.55
UBFD1-202ENST00000563366 MINPP1Q9UNW1 487 aa11.63□□□□□ -0.55
UBFD1-202ENST00000563366 MAST2Q6P0Q8 1798 aa11.63□□□□□ -0.55
UBFD1-202ENST00000563366 COL4A1P02462 1669 aa11.62□□□□□ -0.55
UBFD1-202ENST00000563366 CCDC88AQ3V6T2 1871 aa11.62□□□□□ -0.55
UBFD1-202ENST00000563366 A0A0D9SFI3 127 aa11.62□□□□□ -0.55
UBFD1-202ENST00000563366 KLRG2A4D1S0 409 aaPredicted RBP11.62□□□□□ -0.55
UBFD1-202ENST00000563366 FAM205CA6NFA0 338 aa11.62□□□□□ -0.55
UBFD1-202ENST00000563366 RNF113AO15541 343 aaKnown RBP11.62□□□□□ -0.55
UBFD1-202ENST00000563366 DNAJB2P25686 324 aa11.62□□□□□ -0.55
UBFD1-202ENST00000563366 HOXA10P31260 410 aaPredicted RBP11.62□□□□□ -0.55
UBFD1-202ENST00000563366 PDE6BP35913 854 aa11.62□□□□□ -0.55
UBFD1-202ENST00000563366 MCAMP43121 646 aa11.62□□□□□ -0.55
UBFD1-202ENST00000563366 TMED8Q6PL24 325 aaPredicted RBP11.62□□□□□ -0.55
UBFD1-202ENST00000563366 HELBQ8NG08 1087 aaPredicted RBP11.62□□□□□ -0.55
UBFD1-202ENST00000563366 FAM163AQ96GL9 167 aaPredicted RBP11.62□□□□□ -0.55
UBFD1-202ENST00000563366 FAM227BQ96M60 508 aa11.62□□□□□ -0.55
UBFD1-202ENST00000563366 BRIP1Q9BX63 1249 aa11.62□□□□□ -0.55
UBFD1-202ENST00000563366 TBC1D2Q9BYX2 928 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms