RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 USP17L8P0C7I0 530 aa11.99□□□□□ -0.49
CLK3-208ENST00000562626 VEGFAP15692 232 aaPredicted RBP11.99□□□□□ -0.49
CLK3-208ENST00000562626 RPS12P25398 132 aaKnown RBP11.99□□□□□ -0.49
CLK3-208ENST00000562626 CCDC158Q5M9N0 1113 aa11.99□□□□□ -0.49
CLK3-208ENST00000562626 RBM26Q5T8P6 1007 aaKnown RBP11.99□□□□□ -0.49
CLK3-208ENST00000562626 ZBED3Q96IU2 234 aaPredicted RBP11.99□□□□□ -0.49
CLK3-208ENST00000562626 GNL3LQ9NVN8 582 aaKnown RBP11.99□□□□□ -0.49
CLK3-208ENST00000562626 SCAF8Q9UPN6 1271 aaKnown RBP11.99□□□□□ -0.49
CLK3-208ENST00000562626 PDS5AQ29RF7 1337 aaKnown RBP11.99□□□□□ -0.49
CLK3-208ENST00000562626 SALL1Q9NSC2 1324 aa11.99□□□□□ -0.49
CLK3-208ENST00000562626 DDX60LQ5H9U9 1706 aaKnown RBP11.99□□□□□ -0.49
CLK3-208ENST00000562626 PAPPA2Q9BXP8 1791 aa11.98□□□□□ -0.49
CLK3-208ENST00000562626 MYO3BQ8WXR4 1341 aa11.98□□□□□ -0.49
CLK3-208ENST00000562626 CHGBP05060 677 aa11.98□□□□□ -0.49
CLK3-208ENST00000562626 UQCRFS1P1P0C7P4 283 aa11.98□□□□□ -0.49
CLK3-208ENST00000562626 DIXDC1Q155Q3 683 aa11.98□□□□□ -0.49
CLK3-208ENST00000562626 DLK2Q6UY11 383 aa11.98□□□□□ -0.49
CLK3-208ENST00000562626 CHD1LQ86WJ1 897 aa11.98□□□□□ -0.49
CLK3-208ENST00000562626 WDR66Q8TBY9 1149 aa11.98□□□□□ -0.49
CLK3-208ENST00000562626 PI4K2BQ8TCG2 481 aa11.98□□□□□ -0.49
CLK3-208ENST00000562626 BOLA2Q9H3K6 86 aa11.98□□□□□ -0.49
CLK3-208ENST00000562626 TTF2Q9UNY4 1162 aaKnown RBP11.98□□□□□ -0.49
CLK3-208ENST00000562626 MYH8P13535 1937 aa11.98□□□□□ -0.49
CLK3-208ENST00000562626 ATP5JP18859 108 aa11.97□□□□□ -0.49
CLK3-208ENST00000562626 LMOD1P29536 600 aaPredicted RBP11.97□□□□□ -0.49
CLK3-208ENST00000562626 KIF4BQ2VIQ3 1234 aa11.97□□□□□ -0.49
CLK3-208ENST00000562626 NBPF9Q3BBW0 867 aa11.97□□□□□ -0.49
CLK3-208ENST00000562626 SLFNL1Q499Z3 407 aa11.97□□□□□ -0.49
CLK3-208ENST00000562626 EAPPQ56P03 285 aaPredicted RBP11.97□□□□□ -0.49
CLK3-208ENST00000562626 MYOZ2Q9NPC6 264 aa11.97□□□□□ -0.49
CLK3-208ENST00000562626 ADARB2Q9NS39 739 aaKnown RBP11.97□□□□□ -0.49
CLK3-208ENST00000562626 ECHDC1Q9NTX5 307 aa11.97□□□□□ -0.49
CLK3-208ENST00000562626 ABCF2Q9UG63 623 aa11.97□□□□□ -0.49
CLK3-208ENST00000562626 ATAD5Q96QE3 1844 aa11.96□□□□□ -0.49
CLK3-208ENST00000562626 IQCA1LA6NCM1 817 aa11.96□□□□□ -0.49
CLK3-208ENST00000562626 MAP4K4O95819 1239 aaPredicted RBP11.96□□□□□ -0.49
CLK3-208ENST00000562626 MX1P20591 662 aa11.96□□□□□ -0.49
CLK3-208ENST00000562626 FMR1Q06787 632 aaKnown RBP eCLIP11.96□□□□□ -0.49
CLK3-208ENST00000562626 CFAP100Q494V2 611 aa11.96□□□□□ -0.49
CLK3-208ENST00000562626 ADGRA1Q86SQ6 560 aa11.96□□□□□ -0.49
CLK3-208ENST00000562626 PLEKHM2Q8IWE5 1019 aa11.96□□□□□ -0.49
CLK3-208ENST00000562626 JMYQ8N9B5 988 aa11.96□□□□□ -0.49
CLK3-208ENST00000562626 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.96□□□□□ -0.49
CLK3-208ENST00000562626 TBC1D22AQ8WUA7 517 aa11.96□□□□□ -0.49
CLK3-208ENST00000562626 PRMT6Q96LA8 375 aaPredicted RBP11.96□□□□□ -0.49
CLK3-208ENST00000562626 DNAJC2Q99543 621 aaKnown RBP11.96□□□□□ -0.49
CLK3-208ENST00000562626 HAUS7Q99871 368 aa11.96□□□□□ -0.49
CLK3-208ENST00000562626 LAMB1P07942 1786 aa11.95□□□□□ -0.5
CLK3-208ENST00000562626 H7C1D1 291 aa11.95□□□□□ -0.5
CLK3-208ENST00000562626 GOLIM4O00461 696 aa11.95□□□□□ -0.5
CLK3-208ENST00000562626 WNT10BO00744 389 aa11.95□□□□□ -0.5
CLK3-208ENST00000562626 LDHBP07195 334 aaKnown RBP11.95□□□□□ -0.5
CLK3-208ENST00000562626 CRKP46108 304 aa11.95□□□□□ -0.5
CLK3-208ENST00000562626 PDE1AP54750 535 aa11.95□□□□□ -0.5
CLK3-208ENST00000562626 MECOMQ03112 1051 aa11.95□□□□□ -0.5
CLK3-208ENST00000562626 MAP1SQ66K74 1059 aaPredicted RBP11.95□□□□□ -0.5
CLK3-208ENST00000562626 USP50Q70EL3 339 aaPredicted RBP11.95□□□□□ -0.5
CLK3-208ENST00000562626 NSUN4Q96CB9 384 aaKnown RBP11.95□□□□□ -0.5
CLK3-208ENST00000562626 KLRG1Q96E93 195 aa11.95□□□□□ -0.5
CLK3-208ENST00000562626 CCDC136Q96JN2 1154 aa11.95□□□□□ -0.5
CLK3-208ENST00000562626 STAP2Q9UGK3 403 aa11.95□□□□□ -0.5
CLK3-208ENST00000562626 DAGLAQ9Y4D2 1042 aa11.95□□□□□ -0.5
CLK3-208ENST00000562626 TTC41PQ6P2S7 1318 aa11.94□□□□□ -0.5
CLK3-208ENST00000562626 SPDYE2BA6NHP3 402 aa11.94□□□□□ -0.5
CLK3-208ENST00000562626 SPDYE6P0CI01 402 aa11.94□□□□□ -0.5
CLK3-208ENST00000562626 GAKO14976 1311 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 CLRN2A0PK11 232 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 CACNB3P54284 484 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 ANGEL2Q5VTE6 544 aaKnown RBP11.93□□□□□ -0.5
CLK3-208ENST00000562626 APOBEC3HQ6NTF7 200 aaKnown RBP11.93□□□□□ -0.5
CLK3-208ENST00000562626 ERICH6Q7L0X2 663 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 CENPQQ7L2Z9 268 aaPredicted RBP11.93□□□□□ -0.5
CLK3-208ENST00000562626 MTMR14Q8NCE2 650 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 PAG1Q9NWQ8 432 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 PPP4R2Q9NY27 417 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 GGA3Q9NZ52 723 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 RAI14Q9P0K7 980 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 PGAP2Q9UHJ9 254 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 SERPINA10Q9UK55 444 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 SUGT1Q9Y2Z0 365 aa11.93□□□□□ -0.5
CLK3-208ENST00000562626 RFX7Q2KHR2 1363 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 ADM5C9JUS6 153 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 TRAF5O00463 557 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 IDH1O75874 414 aaKnown RBP11.92□□□□□ -0.5
CLK3-208ENST00000562626 ITGBL1O95965 494 aaPredicted RBP11.92□□□□□ -0.5
CLK3-208ENST00000562626 RBM5P52756 815 aaKnown RBP eCLIP11.92□□□□□ -0.5
CLK3-208ENST00000562626 DLGAP5Q15398 846 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 PNMA8AQ86V59 439 aaPredicted RBP11.92□□□□□ -0.5
CLK3-208ENST00000562626 LDHDQ86WU2 507 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 DZIP1Q86YF9 867 aaKnown RBP11.92□□□□□ -0.5
CLK3-208ENST00000562626 CDAN1Q8IWY9 1227 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 OGFOD1Q8N543 542 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 TEKT1Q969V4 418 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 ZDHHC15Q96MV8 337 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 GLIS2Q9BZE0 524 aaPredicted RBP11.92□□□□□ -0.5
CLK3-208ENST00000562626 TDRD3Q9H7E2 651 aaKnown RBP11.92□□□□□ -0.5
CLK3-208ENST00000562626 LRP2BPQ9P2M1 347 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 HDAC9Q9UKV0 1011 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 CLEC11AQ9Y240 323 aa11.92□□□□□ -0.5
CLK3-208ENST00000562626 SSC5DA1L4H1 1573 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms