RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 PTPN22Q9Y2R2 807 aa23.9■■□□□ 1.42
VPS35-202ENST00000561713 RABL6Q3YEC7 729 aaPredicted RBP23.89■■□□□ 1.41
VPS35-202ENST00000561713 LRRC24Q50LG9 513 aa23.89■■□□□ 1.41
VPS35-202ENST00000561713 INTS3Q68E01 1043 aaKnown RBP23.89■■□□□ 1.41
VPS35-202ENST00000561713 OTUD7BQ6GQQ9 843 aa23.89■■□□□ 1.41
VPS35-202ENST00000561713 ELP3Q9H9T3 547 aa23.89■■□□□ 1.41
VPS35-202ENST00000561713 FAM205AQ6ZU69 1335 aa23.88■■□□□ 1.41
VPS35-202ENST00000561713 TESPA1A2RU30 521 aaPredicted RBP23.88■■□□□ 1.41
VPS35-202ENST00000561713 CAP1Q01518 475 aa23.88■■□□□ 1.41
VPS35-202ENST00000561713 SPDYE2Q495Y8 402 aa23.88■■□□□ 1.41
VPS35-202ENST00000561713 MFSD14BQ5SR56 506 aa23.88■■□□□ 1.41
VPS35-202ENST00000561713 CDAN1Q8IWY9 1227 aa23.88■■□□□ 1.41
VPS35-202ENST00000561713 ZNF70Q9UC06 446 aaPredicted RBP23.88■■□□□ 1.41
VPS35-202ENST00000561713 TDRD7Q8NHU6 1098 aaKnown RBP23.87■■□□□ 1.41
VPS35-202ENST00000561713 OPTNQ96CV9 577 aa23.87■■□□□ 1.41
VPS35-202ENST00000561713 TDRD3Q9H7E2 651 aaKnown RBP23.87■■□□□ 1.41
VPS35-202ENST00000561713 TTF2Q9UNY4 1162 aaKnown RBP23.87■■□□□ 1.41
VPS35-202ENST00000561713 IQSEC3Q9UPP2 1182 aaPredicted RBP23.87■■□□□ 1.41
VPS35-202ENST00000561713 SP3Q02447 781 aa23.86■■□□□ 1.41
VPS35-202ENST00000561713 EFCC1Q9HA90 598 aa23.86■■□□□ 1.41
VPS35-202ENST00000561713 SERPINA10Q9UK55 444 aa23.86■■□□□ 1.41
VPS35-202ENST00000561713 RIPOR2Q9Y4F9 1068 aa23.86■■□□□ 1.41
VPS35-202ENST00000561713 TNFAIP1Q13829 316 aa23.85■■□□□ 1.41
VPS35-202ENST00000561713 UBE4AQ14139 1066 aa23.85■■□□□ 1.41
VPS35-202ENST00000561713 METTL24Q5JXM2 366 aa23.85■■□□□ 1.41
VPS35-202ENST00000561713 CNKSR2Q8WXI2 1034 aa23.85■■□□□ 1.41
VPS35-202ENST00000561713 MS4A4AQ96JQ5 239 aa23.85■■□□□ 1.41
VPS35-202ENST00000561713 FAM84BQ96KN1 310 aaPredicted RBP23.85■■□□□ 1.41
VPS35-202ENST00000561713 TEPSINQ96N21 525 aa23.85■■□□□ 1.41
VPS35-202ENST00000561713 USP44Q9H0E7 712 aa23.85■■□□□ 1.41
VPS35-202ENST00000561713 MROH5Q6ZUA9 1318 aa23.84■■□□□ 1.41
VPS35-202ENST00000561713 TCP10L2B9ZVM9 353 aa23.84■■□□□ 1.41
VPS35-202ENST00000561713 HIBADHP31937 336 aaKnown RBP23.84■■□□□ 1.41
VPS35-202ENST00000561713 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.84■■□□□ 1.41
VPS35-202ENST00000561713 DZIP1LQ8IYY4 767 aaKnown RBP23.84■■□□□ 1.41
VPS35-202ENST00000561713 TMEM39BQ9GZU3 492 aa23.84■■□□□ 1.41
VPS35-202ENST00000561713 VGLL2Q8N8G2 317 aa23.83■■□□□ 1.41
VPS35-202ENST00000561713 ARMC5Q96C12 935 aa23.83■■□□□ 1.41
VPS35-202ENST00000561713 GCC1Q96CN9 775 aa23.83■■□□□ 1.41
VPS35-202ENST00000561713 EN2P19622 333 aaPredicted RBP23.82■■□□□ 1.4
VPS35-202ENST00000561713 CRKP46108 304 aa23.82■■□□□ 1.4
VPS35-202ENST00000561713 CHAF1AQ13111 956 aaPredicted RBP23.82■■□□□ 1.4
VPS35-202ENST00000561713 GRIK5Q16478 980 aa23.82■■□□□ 1.4
VPS35-202ENST00000561713 ALDH1L2Q3SY69 923 aa23.82■■□□□ 1.4
VPS35-202ENST00000561713 BRI3BPQ8WY22 251 aa23.82■■□□□ 1.4
VPS35-202ENST00000561713 VGLL4Q14135 290 aa23.81■■□□□ 1.4
VPS35-202ENST00000561713 TRMT2AQ8IZ69 625 aaKnown RBP23.81■■□□□ 1.4
VPS35-202ENST00000561713 RBBP6Q7Z6E9 1792 aaKnown RBP23.8■■□□□ 1.4
VPS35-202ENST00000561713 HABP4Q5JVS0 413 aaKnown RBP23.8■■□□□ 1.4
VPS35-202ENST00000561713 KIAA0100Q14667 2235 aaKnown RBP23.79■■□□□ 1.4
VPS35-202ENST00000561713 CCL15-CCL14A0A0B4J2E2 113 aa23.79■■□□□ 1.4
VPS35-202ENST00000561713 MAP3K9P80192 1104 aa23.79■■□□□ 1.4
VPS35-202ENST00000561713 CCL15Q16663 113 aa23.79■■□□□ 1.4
VPS35-202ENST00000561713 VPS37DQ86XT2 251 aa23.79■■□□□ 1.4
VPS35-202ENST00000561713 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.79■■□□□ 1.4
VPS35-202ENST00000561713 RFX5P48382 616 aaPredicted RBP23.78■■□□□ 1.4
VPS35-202ENST00000561713 TNNI2P48788 182 aa23.78■■□□□ 1.4
VPS35-202ENST00000561713 GTF2A2P52657 109 aa23.78■■□□□ 1.4
VPS35-202ENST00000561713 TAF1CQ15572 869 aaPredicted RBP23.78■■□□□ 1.4
VPS35-202ENST00000561713 FAM43AQ8N2R8 423 aa23.78■■□□□ 1.4
VPS35-202ENST00000561713 OTUD5Q96G74 571 aa23.78■■□□□ 1.4
VPS35-202ENST00000561713 NOB1Q9ULX3 412 aaKnown RBP23.78■■□□□ 1.4
VPS35-202ENST00000561713 CCER2I3L3R5 266 aa23.77■■□□□ 1.4
VPS35-202ENST00000561713 PDE8BO95263 885 aa23.77■■□□□ 1.4
VPS35-202ENST00000561713 CACNB3P54284 484 aa23.77■■□□□ 1.4
VPS35-202ENST00000561713 FBXO33Q7Z6M2 555 aa23.77■■□□□ 1.4
VPS35-202ENST00000561713 ZNF333Q96JL9 665 aa23.77■■□□□ 1.4
VPS35-202ENST00000561713 ZFYVE28Q9HCC9 887 aa23.77■■□□□ 1.4
VPS35-202ENST00000561713 CSADQ9Y600 493 aa23.77■■□□□ 1.4
VPS35-202ENST00000561713 BCAMP50895 628 aa23.76■■□□□ 1.39
VPS35-202ENST00000561713 SIL1Q9H173 461 aa23.76■■□□□ 1.39
VPS35-202ENST00000561713 PTCH2Q9Y6C5 1203 aa23.76■■□□□ 1.39
VPS35-202ENST00000561713 FRAT2O75474 233 aaPredicted RBP23.75■■□□□ 1.39
VPS35-202ENST00000561713 UBTFL1P0CB47 393 aaPredicted RBP23.75■■□□□ 1.39
VPS35-202ENST00000561713 TMEM106CQ9BVX2 250 aa23.75■■□□□ 1.39
VPS35-202ENST00000561713 EYA2O00167 538 aa23.74■■□□□ 1.39
VPS35-202ENST00000561713 PUM3Q15397 648 aaKnown RBP23.74■■□□□ 1.39
VPS35-202ENST00000561713 SLC9C1Q4G0N8 1177 aa23.74■■□□□ 1.39
VPS35-202ENST00000561713 LRRFIP2Q9Y608 721 aaKnown RBP23.74■■□□□ 1.39
VPS35-202ENST00000561713 FGFR2P21802 821 aa23.73■■□□□ 1.39
VPS35-202ENST00000561713 ARHGEF6Q15052 776 aa23.73■■□□□ 1.39
VPS35-202ENST00000561713 CAVIN4Q5BKX8 364 aa23.73■■□□□ 1.39
VPS35-202ENST00000561713 TEKT1Q969V4 418 aa23.73■■□□□ 1.39
VPS35-202ENST00000561713 MEIS3Q99687 375 aa23.73■■□□□ 1.39
VPS35-202ENST00000561713 SNCAIPQ9Y6H5 919 aa23.73■■□□□ 1.39
VPS35-202ENST00000561713 SPDYE5A6NIY4 337 aa23.72■■□□□ 1.39
VPS35-202ENST00000561713 HDLBPQ00341 1268 aaKnown RBP23.72■■□□□ 1.39
VPS35-202ENST00000561713 NBPF11Q86T75 865 aa23.72■■□□□ 1.39
VPS35-202ENST00000561713 TBC1D22AQ8WUA7 517 aa23.72■■□□□ 1.39
VPS35-202ENST00000561713 ZKSCAN4Q969J2 545 aaPredicted RBP23.72■■□□□ 1.39
VPS35-202ENST00000561713 ARHGAP39Q9C0H5 1083 aa23.72■■□□□ 1.39
VPS35-202ENST00000561713 AK9Q5TCS8 1911 aa23.71■■□□□ 1.39
VPS35-202ENST00000561713 MYCP01106 439 aaPredicted RBP23.71■■□□□ 1.39
VPS35-202ENST00000561713 RARSP54136 660 aaKnown RBP23.71■■□□□ 1.39
VPS35-202ENST00000561713 ATG9AQ7Z3C6 839 aa23.71■■□□□ 1.39
VPS35-202ENST00000561713 WRNIP1Q96S55 665 aa23.71■■□□□ 1.39
VPS35-202ENST00000561713 API5Q9BZZ5 524 aaKnown RBP23.71■■□□□ 1.39
VPS35-202ENST00000561713 PA2G4Q9UQ80 394 aaKnown RBP23.71■■□□□ 1.39
VPS35-202ENST00000561713 TNNQ9UQP3 1299 aa23.71■■□□□ 1.39
VPS35-202ENST00000561713 BTBD19C9JJ37 291 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms