RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 COL4A1P02462 1669 aa6.58□□□□□ -1.36
SPG11-220ENST00000559933 TNRC6CQ9HCJ0 1690 aaKnown RBP6.58□□□□□ -1.36
SPG11-220ENST00000559933 USP42Q9H9J4 1324 aaKnown RBP6.57□□□□□ -1.36
SPG11-220ENST00000559933 DDX58O95786 925 aaKnown RBP6.57□□□□□ -1.36
SPG11-220ENST00000559933 NBPF7P0C2Y1 421 aaPredicted RBP6.57□□□□□ -1.36
SPG11-220ENST00000559933 TBC1D9BQ66K14 1250 aa6.57□□□□□ -1.36
SPG11-220ENST00000559933 SKAP1Q86WV1 359 aa6.57□□□□□ -1.36
SPG11-220ENST00000559933 IL27Q8NEV9 243 aa6.57□□□□□ -1.36
SPG11-220ENST00000559933 LRRN4Q8WUT4 740 aa6.57□□□□□ -1.36
SPG11-220ENST00000559933 SUCLG2Q96I99 432 aa6.57□□□□□ -1.36
SPG11-220ENST00000559933 SRCIN1Q9C0H9 1055 aa6.57□□□□□ -1.36
SPG11-220ENST00000559933 FKBPLQ9UIM3 349 aa6.57□□□□□ -1.36
SPG11-220ENST00000559933 CASZ1Q86V15 1759 aa6.57□□□□□ -1.36
SPG11-220ENST00000559933 ABCC12Q96J65 1359 aa6.57□□□□□ -1.36
SPG11-220ENST00000559933 QSER1Q2KHR3 1735 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 ZC3H4Q9UPT8 1303 aaKnown RBP6.56□□□□□ -1.36
SPG11-220ENST00000559933 ZBTB7BO15156 539 aaPredicted RBP6.56□□□□□ -1.36
SPG11-220ENST00000559933 BMP1P13497 986 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 GYS1P13807 737 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 RFC4P35249 363 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 CCT4P50991 539 aaKnown RBP6.56□□□□□ -1.36
SPG11-220ENST00000559933 SCARF1Q14162 830 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 GCKRQ14397 625 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 TPRNQ4KMQ1 711 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 EPHA10Q5JZY3 1008 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 TRAPPC3LQ5T215 181 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 SUSD4Q5VX71 490 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 VASH1Q7L8A9 365 aaPredicted RBP6.56□□□□□ -1.36
SPG11-220ENST00000559933 UBE3BQ7Z3V4 1068 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 SLC51AQ86UW1 340 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 NLRP10Q86W26 655 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 ARHGAP9Q9BRR9 750 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 ISCA1Q9BUE6 129 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 USP44Q9H0E7 712 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 GOPCQ9HD26 462 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 STK32BQ9NY57 414 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 NIP7Q9Y221 180 aaKnown RBP eCLIP6.56□□□□□ -1.36
SPG11-220ENST00000559933 LRRFIP2Q9Y608 721 aaKnown RBP6.56□□□□□ -1.36
SPG11-220ENST00000559933 DDX60Q8IY21 1712 aaKnown RBP6.56□□□□□ -1.36
SPG11-220ENST00000559933 CARMIL3Q8ND23 1372 aa6.56□□□□□ -1.36
SPG11-220ENST00000559933 A0A087WZG4 1122 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 UPP2O95045 317 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 IGHDP01880 384 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 SSFA2P28290 1259 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 CASP7P55210 303 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 PTK2Q05397 1052 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 DDR1Q08345 913 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 NEXNQ0ZGT2 675 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 TCIRG1Q13488 830 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 R3HDM1Q15032 1099 aaKnown RBP6.55□□□□□ -1.36
SPG11-220ENST00000559933 NR6A1Q15406 480 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 SLC15A2Q16348 729 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 C4orf48Q5BLP8 95 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 PDXDC2PQ6P474 469 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 SH3BP5LQ7L8J4 393 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 NPM2Q86SE8 214 aaKnown RBP6.55□□□□□ -1.36
SPG11-220ENST00000559933 ZBTB33Q86T24 672 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 SIRT2Q8IXJ6 389 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 ZNF34Q8IZ26 560 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 LINS1Q8NG48 757 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 FAM89AQ96GI7 184 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 KAZALD1Q96I82 304 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 CCDC85AQ96PX6 553 aaPredicted RBP6.55□□□□□ -1.36
SPG11-220ENST00000559933 CHMP4AQ9BY43 222 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 ZBTB40Q9NUA8 1239 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 NARFQ9UHQ1 456 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 DDX19BQ9UMR2 479 aa6.55□□□□□ -1.36
SPG11-220ENST00000559933 LAMB2P55268 1798 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 PNMA6EA0A0J9YXQ4 647 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 ERVV-1B6SEH8 477 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 GRM8O00222 908 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 ALDH1L1O75891 902 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 ZIC2O95409 532 aaPredicted RBP6.54□□□□□ -1.36
SPG11-220ENST00000559933 NTSR2O95665 410 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 UBTFL1P0CB47 393 aaPredicted RBP6.54□□□□□ -1.36
SPG11-220ENST00000559933 HCLS1P14317 486 aaPredicted RBP6.54□□□□□ -1.36
SPG11-220ENST00000559933 SNRPBP14678 240 aaKnown RBP6.54□□□□□ -1.36
SPG11-220ENST00000559933 FSHRP23945 695 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 RFC5P40937 340 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 NFIXQ14938 502 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 TMEM259Q4ZIN3 620 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 CEP85Q6P2H3 762 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 TREML4Q6UXN2 200 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 SH3RF1Q7Z6J0 888 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 ANKRD44Q8N8A2 993 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 SLC10A4Q96EP9 437 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 C1QTNF2Q9BXJ5 285 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 BICC1Q9H694 974 aaKnown RBP6.54□□□□□ -1.36
SPG11-220ENST00000559933 CWC25Q9NXE8 425 aaPredicted RBP6.54□□□□□ -1.36
SPG11-220ENST00000559933 C9orf78Q9NZ63 289 aaPredicted RBP6.54□□□□□ -1.36
SPG11-220ENST00000559933 MAP4K5Q9Y4K4 846 aa6.54□□□□□ -1.36
SPG11-220ENST00000559933 SPEF2Q9C093 1822 aa6.53□□□□□ -1.36
SPG11-220ENST00000559933 H7C1W4 665 aa6.53□□□□□ -1.36
SPG11-220ENST00000559933 ZBTB7AO95365 584 aa6.53□□□□□ -1.36
SPG11-220ENST00000559933 USP17L8P0C7I0 530 aa6.53□□□□□ -1.36
SPG11-220ENST00000559933 TIMP2P16035 220 aa6.53□□□□□ -1.36
SPG11-220ENST00000559933 ERFEQ4G0M1 354 aa6.53□□□□□ -1.36
SPG11-220ENST00000559933 MRPL14Q6P1L8 145 aaKnown RBP6.53□□□□□ -1.36
SPG11-220ENST00000559933 TRIM46Q7Z4K8 759 aa6.53□□□□□ -1.36
SPG11-220ENST00000559933 TRMT44Q8IYL2 757 aaKnown RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms