RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 ZSCAN16Q9H4T2 348 aaPredicted RBP13□□□□□ -0.33
SPG11-217ENST00000559511 SRP68Q9UHB9 627 aaKnown RBP13□□□□□ -0.33
SPG11-217ENST00000559511 NARFQ9UHQ1 456 aa13□□□□□ -0.33
SPG11-217ENST00000559511 DENND2AQ9ULE3 1009 aa13□□□□□ -0.33
SPG11-217ENST00000559511 TCRBV5S4A2TA0A5A2 114 aa13□□□□□ -0.33
SPG11-217ENST00000559511 UQCRFS1P1P0C7P4 283 aa13□□□□□ -0.33
SPG11-217ENST00000559511 MCM5P33992 734 aa13□□□□□ -0.33
SPG11-217ENST00000559511 BICDL1Q6ZP65 573 aa13□□□□□ -0.33
SPG11-217ENST00000559511 AMIGO3Q86WK7 504 aa13□□□□□ -0.33
SPG11-217ENST00000559511 NKX2-3Q8TAU0 364 aa13□□□□□ -0.33
SPG11-217ENST00000559511 EIF2AK3Q9NZJ5 1116 aaKnown RBP13□□□□□ -0.33
SPG11-217ENST00000559511 UBR3Q6ZT12 1888 aa12.99□□□□□ -0.33
SPG11-217ENST00000559511 CARMIL3Q8ND23 1372 aa12.99□□□□□ -0.33
SPG11-217ENST00000559511 FDPSP14324 419 aaKnown RBP12.99□□□□□ -0.33
SPG11-217ENST00000559511 ADD1P35611 737 aaKnown RBP12.99□□□□□ -0.33
SPG11-217ENST00000559511 RASGRF1Q13972 1273 aa12.99□□□□□ -0.33
SPG11-217ENST00000559511 UVSSAQ2YD98 709 aa12.99□□□□□ -0.33
SPG11-217ENST00000559511 C3orf67Q6ZVT6 689 aa12.99□□□□□ -0.33
SPG11-217ENST00000559511 NCOA7Q8NI08 942 aa12.99□□□□□ -0.33
SPG11-217ENST00000559511 SLC5A1P13866 664 aa12.98□□□□□ -0.33
SPG11-217ENST00000559511 IGHMBP2P38935 993 aaKnown RBP12.98□□□□□ -0.33
SPG11-217ENST00000559511 CAMK4Q16566 473 aa12.98□□□□□ -0.33
SPG11-217ENST00000559511 TBC1D10CQ8IV04 446 aa12.98□□□□□ -0.33
SPG11-217ENST00000559511 KLHL34Q8N239 644 aa12.98□□□□□ -0.33
SPG11-217ENST00000559511 SPATA5Q8NB90 893 aa12.98□□□□□ -0.33
SPG11-217ENST00000559511 DACT1Q9NYF0 836 aa12.98□□□□□ -0.33
SPG11-217ENST00000559511 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.98□□□□□ -0.33
SPG11-217ENST00000559511 USP25Q9UHP3 1055 aa12.98□□□□□ -0.33
SPG11-217ENST00000559511 NOL7Q9UMY1 257 aaKnown RBP12.98□□□□□ -0.33
SPG11-217ENST00000559511 HPS5Q9UPZ3 1129 aa12.98□□□□□ -0.33
SPG11-217ENST00000559511 KLF18A0A0U1RQI7 1052 aa12.98□□□□□ -0.33
SPG11-217ENST00000559511 GOLGA6L4A6NEF3 574 aa12.98□□□□□ -0.33
SPG11-217ENST00000559511 MSNP26038 577 aaKnown RBP12.98□□□□□ -0.33
SPG11-217ENST00000559511 SF3B3Q15393 1217 aaKnown RBP12.98□□□□□ -0.33
SPG11-217ENST00000559511 RALYLQ86SE5 291 aaKnown RBP12.98□□□□□ -0.33
SPG11-217ENST00000559511 FTOQ9C0B1 505 aaKnown RBP eCLIP12.98□□□□□ -0.33
SPG11-217ENST00000559511 NUP62CLQ9H1M0 184 aa12.98□□□□□ -0.33
SPG11-217ENST00000559511 RTCBQ9Y3I0 505 aaKnown RBP12.98□□□□□ -0.33
SPG11-217ENST00000559511 GUCY1B3Q02153 619 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 CEBPZQ03701 1054 aaKnown RBP12.97□□□□□ -0.33
SPG11-217ENST00000559511 RAB11FIP4Q86YS3 637 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 ARHGEF1Q92888 912 aaKnown RBP12.97□□□□□ -0.33
SPG11-217ENST00000559511 KIF3AQ9Y496 699 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 MYH13Q9UKX3 1938 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 GOLGA8BA8MQT2 603 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 ZPR1O75312 459 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 NR1I2O75469 434 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 APPP05067 770 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 CHRNDQ07001 517 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 MAP3K11Q16584 847 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 SLC10A5Q5PT55 438 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 STRBPQ96SI9 672 aaKnown RBP12.97□□□□□ -0.33
SPG11-217ENST00000559511 CDC5LQ99459 802 aaKnown RBP12.97□□□□□ -0.33
SPG11-217ENST00000559511 QTRT2Q9H974 415 aaKnown RBP12.97□□□□□ -0.33
SPG11-217ENST00000559511 CFAP45Q9UL16 551 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 ECM29Q5VYK3 1845 aa12.97□□□□□ -0.33
SPG11-217ENST00000559511 WDR19Q8NEZ3 1342 aa12.96□□□□□ -0.33
SPG11-217ENST00000559511 CCDC192P0DO97 292 aa12.96□□□□□ -0.33
SPG11-217ENST00000559511 BCAMP50895 628 aa12.96□□□□□ -0.33
SPG11-217ENST00000559511 CYB5R4Q7L1T6 521 aa12.96□□□□□ -0.33
SPG11-217ENST00000559511 MAGEB6Q8N7X4 407 aa12.96□□□□□ -0.33
SPG11-217ENST00000559511 BICD2Q8TD16 824 aa12.96□□□□□ -0.33
SPG11-217ENST00000559511 SETDB2Q96T68 719 aa12.96□□□□□ -0.33
SPG11-217ENST00000559511 BCL11BQ9C0K0 894 aaPredicted RBP12.96□□□□□ -0.33
SPG11-217ENST00000559511 TNMDQ9H2S6 317 aa12.96□□□□□ -0.33
SPG11-217ENST00000559511 CCDC39Q9UFE4 941 aa12.96□□□□□ -0.33
SPG11-217ENST00000559511 TNRC6CQ9HCJ0 1690 aaKnown RBP12.96□□□□□ -0.34
SPG11-217ENST00000559511 CKAP2LQ8IYA6 745 aa12.95□□□□□ -0.34
SPG11-217ENST00000559511 AIDAQ96BJ3 306 aa12.95□□□□□ -0.34
SPG11-217ENST00000559511 USP28Q96RU2 1077 aa12.95□□□□□ -0.34
SPG11-217ENST00000559511 ZKSCAN5Q9Y2L8 839 aa12.95□□□□□ -0.34
SPG11-217ENST00000559511 GTF2E1P29083 439 aaPredicted RBP12.95□□□□□ -0.34
SPG11-217ENST00000559511 RBM43Q6ZSC3 357 aaKnown RBP12.95□□□□□ -0.34
SPG11-217ENST00000559511 CHMP4CQ96CF2 233 aa12.95□□□□□ -0.34
SPG11-217ENST00000559511 NYXQ9GZU5 481 aa12.95□□□□□ -0.34
SPG11-217ENST00000559511 CLSTN2Q9H4D0 955 aa12.95□□□□□ -0.34
SPG11-217ENST00000559511 EPB41L4AQ9HCS5 686 aaPredicted RBP12.95□□□□□ -0.34
SPG11-217ENST00000559511 LRRC4BQ9NT99 713 aa12.95□□□□□ -0.34
SPG11-217ENST00000559511 DDX19AQ9NUU7 478 aaKnown RBP12.95□□□□□ -0.34
SPG11-217ENST00000559511 RCOR1Q9UKL0 485 aa12.95□□□□□ -0.34
SPG11-217ENST00000559511 NEDD4P46934 1319 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 KDM4AO75164 1064 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 MBD4O95243 580 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 ADCY5O95622 1261 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 TYRO3Q06418 890 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 MAP3K12Q12852 859 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 TRDNQ13061 729 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 OTUD7BQ6GQQ9 843 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 ANKRD18AQ8IVF6 992 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 INCENPQ9NQS7 918 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 MRVI1Q9Y6F6 885 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 TIAM2Q8IVF5 1701 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 B4E1Z4 1266 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 AP5Z1O43299 807 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 ALX1Q15699 326 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 FAM196AQ6ZSG2 479 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 NBPF5PQ86XG9 351 aaPredicted RBP12.94□□□□□ -0.34
SPG11-217ENST00000559511 ARMT1Q9H993 441 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 SENP2Q9HC62 589 aa12.94□□□□□ -0.34
SPG11-217ENST00000559511 ANGEL1Q9UNK9 670 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms