RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 FAM200AQ8TCP9 573 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 BICD2Q8TD16 824 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 TNMDQ9H2S6 317 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 CLSTN2Q9H4D0 955 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 CNNM1Q9NRU3 951 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 RIPOR2Q9Y4F9 1068 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 MROH5Q6ZUA9 1318 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 SALL1Q9NSC2 1324 aa8.53□□□□□ -1.04
VPS13C-206ENST00000558338 CTAGE5O15320 804 aa8.52□□□□□ -1.05
VPS13C-206ENST00000558338 ADORA1P30542 326 aa8.52□□□□□ -1.05
VPS13C-206ENST00000558338 APOBRQ0VD83 1088 aa8.52□□□□□ -1.05
VPS13C-206ENST00000558338 COL9A3Q14050 684 aaPredicted RBP8.52□□□□□ -1.05
VPS13C-206ENST00000558338 RBM43Q6ZSC3 357 aaKnown RBP8.52□□□□□ -1.05
VPS13C-206ENST00000558338 TTLL11Q8NHH1 800 aa8.52□□□□□ -1.05
VPS13C-206ENST00000558338 NCOA7Q8NI08 942 aa8.52□□□□□ -1.05
VPS13C-206ENST00000558338 UBE2Q2Q8WVN8 375 aa8.52□□□□□ -1.05
VPS13C-206ENST00000558338 OSBP2Q969R2 916 aa8.52□□□□□ -1.05
VPS13C-206ENST00000558338 USP25Q9UHP3 1055 aa8.52□□□□□ -1.05
VPS13C-206ENST00000558338 TBC1D2BQ9UPU7 963 aa8.52□□□□□ -1.05
VPS13C-206ENST00000558338 THRAP3Q9Y2W1 955 aaKnown RBP8.52□□□□□ -1.05
VPS13C-206ENST00000558338 AKAP11Q9UKA4 1901 aa8.52□□□□□ -1.05
VPS13C-206ENST00000558338 NRAPQ86VF7 1730 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 STK25O00506 426 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 ZNF213O14771 459 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 ONECUT3O60422 494 aaPredicted RBP8.51□□□□□ -1.05
VPS13C-206ENST00000558338 ADCY5O95622 1261 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 CHGBP05060 677 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 PDIA3P30101 505 aaKnown RBP8.51□□□□□ -1.05
VPS13C-206ENST00000558338 ZAP70P43403 619 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 UBE3CQ15386 1083 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 DZIP3Q86Y13 1208 aaKnown RBP8.51□□□□□ -1.05
VPS13C-206ENST00000558338 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.51□□□□□ -1.05
VPS13C-206ENST00000558338 TRMT112Q9UI30 125 aaKnown RBP8.51□□□□□ -1.05
VPS13C-206ENST00000558338 ZMYM6O95789 1325 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 PHLPP1O60346 1717 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 DOCK2Q92608 1830 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 GPAA1O43292 621 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 PDE8BO95263 885 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 LIG1P18858 919 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 ARID4AP29374 1257 aaPredicted RBP8.51□□□□□ -1.05
VPS13C-206ENST00000558338 ADD2P35612 726 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 TYRO3Q06418 890 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 TRDNQ13061 729 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 PUM3Q15397 648 aaKnown RBP8.51□□□□□ -1.05
VPS13C-206ENST00000558338 SASS6Q6UVJ0 657 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 DDX11Q96FC9 970 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 LRRC2Q9BYS8 371 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 GREM2Q9H772 168 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 ANO8Q9HCE9 1232 aaPredicted RBP8.51□□□□□ -1.05
VPS13C-206ENST00000558338 DACT1Q9NYF0 836 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 ZBTB1Q9Y2K1 713 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 CARMIL3Q8ND23 1372 aa8.51□□□□□ -1.05
VPS13C-206ENST00000558338 A6NJR5 290 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 PRC1O43663 620 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 CTDNEP1O95476 244 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 SLC5A1P13866 664 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 GPTP24298 496 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 IRX5P78411 483 aaPredicted RBP8.5□□□□□ -1.05
VPS13C-206ENST00000558338 HLFQ16534 295 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 PARP10Q53GL7 1025 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 CCDC73Q6ZRK6 1079 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 MB21D2Q8IYB1 491 aaPredicted RBP8.5□□□□□ -1.05
VPS13C-206ENST00000558338 ZNF34Q8IZ26 560 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 FAM177A1Q8N128 213 aaPredicted RBP8.5□□□□□ -1.05
VPS13C-206ENST00000558338 VGLL2Q8N8G2 317 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 LPIN2Q92539 896 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 RCOR1Q9UKL0 485 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 NAP1L2Q9ULW6 460 aaPredicted RBP8.5□□□□□ -1.05
VPS13C-206ENST00000558338 RTL9Q8NET4 1388 aa8.5□□□□□ -1.05
VPS13C-206ENST00000558338 C4AP0C0L4 1744 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 C4BP0C0L5 1744 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 TIAM2Q8IVF5 1701 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 ZNF831Q5JPB2 1677 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 CDKL5O76039 1030 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 FGAP02671 866 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 MCAMP43121 646 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 FAM173BQ6P4H8 233 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 CPLX2Q6PUV4 134 aaKnown RBP8.49□□□□□ -1.05
VPS13C-206ENST00000558338 BRAPQ7Z569 592 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 RETREG2Q8NC44 543 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 TMEM106CQ9BVX2 250 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 TFIP11Q9UBB9 837 aaKnown RBP8.49□□□□□ -1.05
VPS13C-206ENST00000558338 MRVI1Q9Y6F6 885 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.49□□□□□ -1.05
VPS13C-206ENST00000558338 KDM4FA0A1W2PPD8 638 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 GOLGA8BA8MQT2 603 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 CPLX1O14810 134 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 CCT2P78371 535 aaKnown RBP8.49□□□□□ -1.05
VPS13C-206ENST00000558338 SCARF1Q14162 830 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 SLFNL1Q499Z3 407 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.49□□□□□ -1.05
VPS13C-206ENST00000558338 PGBD1Q96JS3 809 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 CCDC85AQ96PX6 553 aaPredicted RBP8.49□□□□□ -1.05
VPS13C-206ENST00000558338 CCDC87Q9NVE4 849 aa8.49□□□□□ -1.05
VPS13C-206ENST00000558338 BCORQ6W2J9 1755 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 KLF18A0A0U1RQI7 1052 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 FOXP2O15409 715 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 KINO60870 393 aaKnown RBP8.48□□□□□ -1.05
VPS13C-206ENST00000558338 NR1I2O75469 434 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 MAP3K12Q12852 859 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms