RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 CDPF1Q6NVV7 123 aa5.67□□□□□ -1.5
VPS13C-205ENST00000558088 TP53INP2Q8IXH6 220 aa5.67□□□□□ -1.5
VPS13C-205ENST00000558088 ABI1Q8IZP0 508 aa5.67□□□□□ -1.5
VPS13C-205ENST00000558088 GJD3Q8N144 294 aa5.67□□□□□ -1.5
VPS13C-205ENST00000558088 C2CD4AQ8NCU7 369 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-205ENST00000558088 CLEC4MQ9H2X3 399 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-205ENST00000558088 ZFYVE28Q9HCC9 887 aa5.67□□□□□ -1.5
VPS13C-205ENST00000558088 LATS2Q9NRM7 1088 aa5.67□□□□□ -1.5
VPS13C-205ENST00000558088 RAD18Q9NS91 495 aa5.67□□□□□ -1.5
VPS13C-205ENST00000558088 BSDC1Q9NW68 430 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-205ENST00000558088 A0A096LPE4 126 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 A0A1W2PPZ6 126 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 ARID3CA6NKF2 412 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 DLGAP3O95886 979 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 ADH5P11766 374 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 RAB6AP20340 208 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 POU4F3Q15319 338 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 PEAR1Q5VY43 1037 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-205ENST00000558088 ZAR1Q86SH2 424 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 AGBL5Q8NDL9 886 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 CORO1BQ9BR76 489 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 CCDC39Q9UFE4 941 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 PRKAG2Q9UGJ0 569 aa5.66□□□□□ -1.5
VPS13C-205ENST00000558088 TMEM88BA6NKF7 163 aa5.65□□□□□ -1.5
VPS13C-205ENST00000558088 METTL12A8MUP2 240 aa5.65□□□□□ -1.5
VPS13C-205ENST00000558088 FZD6O60353 706 aa5.65□□□□□ -1.5
VPS13C-205ENST00000558088 PRNPP04156 253 aa5.65□□□□□ -1.5
VPS13C-205ENST00000558088 POLR3DP05423 398 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-205ENST00000558088 MAOBP27338 520 aa5.65□□□□□ -1.5
VPS13C-205ENST00000558088 HNRNPUQ00839 825 aaKnown RBP eCLIP5.65□□□□□ -1.5
VPS13C-205ENST00000558088 AKAP4Q5JQC9 854 aa5.65□□□□□ -1.5
VPS13C-205ENST00000558088 B4GALNT3Q6L9W6 998 aa5.65□□□□□ -1.5
VPS13C-205ENST00000558088 DYMQ7RTS9 669 aa5.65□□□□□ -1.5
VPS13C-205ENST00000558088 CCNJLQ8IV13 435 aa5.65□□□□□ -1.5
VPS13C-205ENST00000558088 EZH1Q92800 747 aaPredicted RBP5.65□□□□□ -1.5
VPS13C-205ENST00000558088 LIN7BQ9HAP6 207 aa5.65□□□□□ -1.5
VPS13C-205ENST00000558088 AP4E1Q9UPM8 1137 aa5.65□□□□□ -1.5
VPS13C-205ENST00000558088 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-205ENST00000558088 ZNF211Q13398 564 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-205ENST00000558088 CCDC82Q8N4S0 544 aa5.64□□□□□ -1.51
VPS13C-205ENST00000558088 FLCNQ8NFG4 579 aa5.64□□□□□ -1.51
VPS13C-205ENST00000558088 ASIC4Q96FT7 647 aa5.64□□□□□ -1.51
VPS13C-205ENST00000558088 LRRC4CQ9HCJ2 640 aa5.64□□□□□ -1.51
VPS13C-205ENST00000558088 CCDC87Q9NVE4 849 aa5.64□□□□□ -1.51
VPS13C-205ENST00000558088 BRPF3Q9ULD4 1205 aa5.64□□□□□ -1.51
VPS13C-205ENST00000558088 ACTL7BQ9Y614 415 aa5.64□□□□□ -1.51
VPS13C-205ENST00000558088 A0A1W2PP55 124 aa5.63□□□□□ -1.51
VPS13C-205ENST00000558088 FAM170BA6NMN3 283 aa5.63□□□□□ -1.51
VPS13C-205ENST00000558088 NFICP08651 508 aa5.63□□□□□ -1.51
VPS13C-205ENST00000558088 GALNT12Q8IXK2 581 aa5.63□□□□□ -1.51
VPS13C-205ENST00000558088 ANO2Q9NQ90 1003 aa5.63□□□□□ -1.51
VPS13C-205ENST00000558088 NDUFB5O43674 189 aa5.62□□□□□ -1.51
VPS13C-205ENST00000558088 ADMP35318 185 aa5.62□□□□□ -1.51
VPS13C-205ENST00000558088 ASPAP45381 313 aa5.62□□□□□ -1.51
VPS13C-205ENST00000558088 PDE3AQ14432 1141 aa5.62□□□□□ -1.51
VPS13C-205ENST00000558088 SPRED3Q2MJR0 410 aa5.62□□□□□ -1.51
VPS13C-205ENST00000558088 NRSN2Q9GZP1 204 aa5.62□□□□□ -1.51
VPS13C-205ENST00000558088 EHD4Q9H223 541 aa5.62□□□□□ -1.51
VPS13C-205ENST00000558088 EGFL7Q9UHF1 273 aa5.62□□□□□ -1.51
VPS13C-205ENST00000558088 B3GALT4O96024 378 aa5.61□□□□□ -1.51
VPS13C-205ENST00000558088 JUNBP17275 347 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-205ENST00000558088 GRIA4P48058 902 aa5.61□□□□□ -1.51
VPS13C-205ENST00000558088 AP3B2Q13367 1082 aa5.61□□□□□ -1.51
VPS13C-205ENST00000558088 PDE3BQ13370 1112 aa5.61□□□□□ -1.51
VPS13C-205ENST00000558088 ZNF423Q2M1K9 1284 aa5.61□□□□□ -1.51
VPS13C-205ENST00000558088 GLYCTKQ8IVS8 523 aa5.61□□□□□ -1.51
VPS13C-205ENST00000558088 STK11IPQ8N1F8 1099 aa5.61□□□□□ -1.51
VPS13C-205ENST00000558088 TCF12Q99081 682 aa5.61□□□□□ -1.51
VPS13C-205ENST00000558088 SEMA6CQ9H3T2 930 aa5.61□□□□□ -1.51
VPS13C-205ENST00000558088 DAGLAQ9Y4D2 1042 aa5.61□□□□□ -1.51
VPS13C-205ENST00000558088 CYP27C1Q4G0S4 372 aa5.6□□□□□ -1.51
VPS13C-205ENST00000558088 ZNF765Q7L2R6 523 aa5.6□□□□□ -1.51
VPS13C-205ENST00000558088 SHISA5Q8N114 240 aa5.6□□□□□ -1.51
VPS13C-205ENST00000558088 ACSS3Q9H6R3 686 aa5.6□□□□□ -1.51
VPS13C-205ENST00000558088 FAM105AQ9NUU6 356 aa5.6□□□□□ -1.51
VPS13C-205ENST00000558088 H3BRB1 525 aa5.59□□□□□ -1.51
VPS13C-205ENST00000558088 ICMTO60725 284 aa5.59□□□□□ -1.51
VPS13C-205ENST00000558088 CPNE3O75131 537 aaKnown RBP5.59□□□□□ -1.51
VPS13C-205ENST00000558088 FZD5Q13467 585 aa5.59□□□□□ -1.51
VPS13C-205ENST00000558088 KIAA0319Q5VV43 1072 aa5.59□□□□□ -1.51
VPS13C-205ENST00000558088 CBLL1Q75N03 491 aa5.59□□□□□ -1.51
VPS13C-205ENST00000558088 GATA6Q92908 595 aa5.59□□□□□ -1.51
VPS13C-205ENST00000558088 ZNF576Q9H609 170 aa5.59□□□□□ -1.51
VPS13C-205ENST00000558088 TUT1Q9H6E5 874 aaKnown RBP5.59□□□□□ -1.51
VPS13C-205ENST00000558088 PIDD1Q9HB75 910 aa5.59□□□□□ -1.51
VPS13C-205ENST00000558088 SLC5A6Q9Y289 635 aa5.59□□□□□ -1.51
VPS13C-205ENST00000558088 BIN1O00499 593 aa5.58□□□□□ -1.52
VPS13C-205ENST00000558088 AOC2O75106 756 aa5.58□□□□□ -1.52
VPS13C-205ENST00000558088 PLCL1Q15111 1095 aa5.58□□□□□ -1.52
VPS13C-205ENST00000558088 OGFOD2Q6N063 350 aa5.58□□□□□ -1.52
VPS13C-205ENST00000558088 PHLDB3Q6NSJ2 640 aa5.58□□□□□ -1.52
VPS13C-205ENST00000558088 TRIM56Q9BRZ2 755 aaKnown RBP5.58□□□□□ -1.52
VPS13C-205ENST00000558088 PAK6Q9NQU5 681 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-205ENST00000558088 ZC3H7BQ9UGR2 993 aaKnown RBP5.58□□□□□ -1.52
VPS13C-205ENST00000558088 SYNGAP1Q96PV0 1343 aa5.57□□□□□ -1.52
VPS13C-205ENST00000558088 GADD45BO75293 160 aaPredicted RBP5.57□□□□□ -1.52
VPS13C-205ENST00000558088 CTSBP07858 339 aa5.57□□□□□ -1.52
VPS13C-205ENST00000558088 SLFN14P0C7P3 912 aa5.57□□□□□ -1.52
VPS13C-205ENST00000558088 ITGB5P18084 799 aa5.57□□□□□ -1.52
VPS13C-205ENST00000558088 ITPKAP23677 461 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms