RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 PTPRCP08575 1304 aa20.07■□□□□ 0.8
SCFD1-224ENST00000557713 METTL24Q5JXM2 366 aa20.07■□□□□ 0.8
SCFD1-224ENST00000557713 CDAN1Q8IWY9 1227 aa20.07■□□□□ 0.8
SCFD1-224ENST00000557713 PTPN18Q99952 460 aa20.07■□□□□ 0.8
SCFD1-224ENST00000557713 USP44Q9H0E7 712 aa20.07■□□□□ 0.8
SCFD1-224ENST00000557713 IQSEC3Q9UPP2 1182 aaPredicted RBP20.07■□□□□ 0.8
SCFD1-224ENST00000557713 TCP10L2B9ZVM9 353 aa20.06■□□□□ 0.8
SCFD1-224ENST00000557713 HDLBPQ00341 1268 aaKnown RBP20.06■□□□□ 0.8
SCFD1-224ENST00000557713 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.06■□□□□ 0.8
SCFD1-224ENST00000557713 VPS37DQ86XT2 251 aa20.06■□□□□ 0.8
SCFD1-224ENST00000557713 SSH1Q8WYL5 1049 aa20.06■□□□□ 0.8
SCFD1-224ENST00000557713 ARAP2Q8WZ64 1704 aa20.06■□□□□ 0.8
SCFD1-224ENST00000557713 ELP3Q9H9T3 547 aa20.06■□□□□ 0.8
SCFD1-224ENST00000557713 CAVIN4Q5BKX8 364 aa20.05■□□□□ 0.8
SCFD1-224ENST00000557713 OTUD7BQ6GQQ9 843 aa20.05■□□□□ 0.8
SCFD1-224ENST00000557713 OTOP1Q7RTM1 612 aa20.05■□□□□ 0.8
SCFD1-224ENST00000557713 KLHDC4Q8TBB5 520 aa20.05■□□□□ 0.8
SCFD1-224ENST00000557713 TBC1D22AQ8WUA7 517 aa20.05■□□□□ 0.8
SCFD1-224ENST00000557713 MRIQ9BWK5 157 aa20.05■□□□□ 0.8
SCFD1-224ENST00000557713 TMEM39BQ9GZU3 492 aa20.05■□□□□ 0.8
SCFD1-224ENST00000557713 E9PSI1 815 aa20.04■□□□□ 0.8
SCFD1-224ENST00000557713 TNNI2P48788 182 aa20.04■□□□□ 0.8
SCFD1-224ENST00000557713 BCAMP50895 628 aa20.04■□□□□ 0.8
SCFD1-224ENST00000557713 CHAF1AQ13111 956 aaPredicted RBP20.04■□□□□ 0.8
SCFD1-224ENST00000557713 CRHR2Q13324 411 aa20.04■□□□□ 0.8
SCFD1-224ENST00000557713 OPTNQ96CV9 577 aa20.04■□□□□ 0.8
SCFD1-224ENST00000557713 MS4A4AQ96JQ5 239 aa20.04■□□□□ 0.8
SCFD1-224ENST00000557713 TRIM17Q9Y577 477 aa20.04■□□□□ 0.8
SCFD1-224ENST00000557713 FGFR2P21802 821 aa20.03■□□□□ 0.8
SCFD1-224ENST00000557713 MAP3K9P80192 1104 aa20.03■□□□□ 0.8
SCFD1-224ENST00000557713 FRAT2O75474 233 aaPredicted RBP20.02■□□□□ 0.8
SCFD1-224ENST00000557713 SLFN5Q08AF3 891 aa20.02■□□□□ 0.8
SCFD1-224ENST00000557713 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.02■□□□□ 0.8
SCFD1-224ENST00000557713 CNKSR2Q8WXI2 1034 aa20.02■□□□□ 0.8
SCFD1-224ENST00000557713 TEKT1Q969V4 418 aa20.02■□□□□ 0.8
SCFD1-224ENST00000557713 ERO1AQ96HE7 468 aa20.02■□□□□ 0.8
SCFD1-224ENST00000557713 ZDHHC15Q96MV8 337 aa20.02■□□□□ 0.8
SCFD1-224ENST00000557713 OTOFQ9HC10 1997 aa20.02■□□□□ 0.8
SCFD1-224ENST00000557713 KIF16BQ96L93 1317 aa20.02■□□□□ 0.79
SCFD1-224ENST00000557713 RFX5P48382 616 aaPredicted RBP20.01■□□□□ 0.79
SCFD1-224ENST00000557713 VGLL4Q14135 290 aa20.01■□□□□ 0.79
SCFD1-224ENST00000557713 CD99L2Q8TCZ2 262 aa20.01■□□□□ 0.79
SCFD1-224ENST00000557713 PTPN22Q9Y2R2 807 aa20.01■□□□□ 0.79
SCFD1-224ENST00000557713 CACNB3P54284 484 aa20■□□□□ 0.79
SCFD1-224ENST00000557713 SP3Q02447 781 aa20■□□□□ 0.79
SCFD1-224ENST00000557713 PUM3Q15397 648 aaKnown RBP20■□□□□ 0.79
SCFD1-224ENST00000557713 PRPF38BQ5VTL8 546 aaKnown RBP20■□□□□ 0.79
SCFD1-224ENST00000557713 APOBEC3HQ6NTF7 200 aaKnown RBP20■□□□□ 0.79
SCFD1-224ENST00000557713 BRI3BPQ8WY22 251 aa20■□□□□ 0.79
SCFD1-224ENST00000557713 SUGT1Q9Y2Z0 365 aa20■□□□□ 0.79
SCFD1-224ENST00000557713 PDE4DIPQ5VU43 2346 aa20■□□□□ 0.79
SCFD1-224ENST00000557713 EYA2O00167 538 aa19.99■□□□□ 0.79
SCFD1-224ENST00000557713 IFIT1P09914 478 aaKnown RBP19.99■□□□□ 0.79
SCFD1-224ENST00000557713 CAP1Q01518 475 aa19.99■□□□□ 0.79
SCFD1-224ENST00000557713 ALDH1L2Q3SY69 923 aa19.99■□□□□ 0.79
SCFD1-224ENST00000557713 FKBP1CQ5VVH2 108 aa19.99■□□□□ 0.79
SCFD1-224ENST00000557713 INTS3Q68E01 1043 aaKnown RBP19.99■□□□□ 0.79
SCFD1-224ENST00000557713 FAM83AQ86UY5 434 aa19.99■□□□□ 0.79
SCFD1-224ENST00000557713 GTF2A2P52657 109 aa19.98■□□□□ 0.79
SCFD1-224ENST00000557713 HHIPL2Q6UWX4 724 aa19.98■□□□□ 0.79
SCFD1-224ENST00000557713 EFCC1Q9HA90 598 aa19.98■□□□□ 0.79
SCFD1-224ENST00000557713 CSADQ9Y600 493 aa19.98■□□□□ 0.79
SCFD1-224ENST00000557713 CCL15-CCL14A0A0B4J2E2 113 aa19.97■□□□□ 0.79
SCFD1-224ENST00000557713 CCL15Q16663 113 aa19.97■□□□□ 0.79
SCFD1-224ENST00000557713 ATG9AQ7Z3C6 839 aa19.97■□□□□ 0.79
SCFD1-224ENST00000557713 TRMT2AQ8IZ69 625 aaKnown RBP19.97■□□□□ 0.79
SCFD1-224ENST00000557713 LPIN2Q92539 896 aa19.97■□□□□ 0.79
SCFD1-224ENST00000557713 OTUD5Q96G74 571 aa19.97■□□□□ 0.79
SCFD1-224ENST00000557713 CDCA7LQ96GN5 454 aa19.97■□□□□ 0.79
SCFD1-224ENST00000557713 MAST3O60307 1309 aa19.97■□□□□ 0.79
SCFD1-224ENST00000557713 SPDYE5A6NIY4 337 aa19.96■□□□□ 0.79
SCFD1-224ENST00000557713 TMOD2Q9NZR1 351 aa19.96■□□□□ 0.79
SCFD1-224ENST00000557713 SNCAIPQ9Y6H5 919 aa19.96■□□□□ 0.79
SCFD1-224ENST00000557713 HTTP42858 3142 aa19.96■□□□□ 0.79
SCFD1-224ENST00000557713 SLC5A1P13866 664 aa19.95■□□□□ 0.78
SCFD1-224ENST00000557713 TAF1CQ15572 869 aaPredicted RBP19.95■□□□□ 0.78
SCFD1-224ENST00000557713 FAM43AQ8N2R8 423 aa19.95■□□□□ 0.78
SCFD1-224ENST00000557713 WDR66Q8TBY9 1149 aa19.95■□□□□ 0.78
SCFD1-224ENST00000557713 ZKSCAN4Q969J2 545 aaPredicted RBP19.95■□□□□ 0.78
SCFD1-224ENST00000557713 ZFYVE28Q9HCC9 887 aa19.95■□□□□ 0.78
SCFD1-224ENST00000557713 POTEFA5A3E0 1075 aa19.94■□□□□ 0.78
SCFD1-224ENST00000557713 ERO1BQ86YB8 467 aa19.94■□□□□ 0.78
SCFD1-224ENST00000557713 ARMC5Q96C12 935 aa19.94■□□□□ 0.78
SCFD1-224ENST00000557713 HOOK2Q96ED9 719 aa19.94■□□□□ 0.78
SCFD1-224ENST00000557713 WRNIP1Q96S55 665 aa19.94■□□□□ 0.78
SCFD1-224ENST00000557713 SMC4Q9NTJ3 1288 aa19.94■□□□□ 0.78
SCFD1-224ENST00000557713 FBXO3Q9UK99 471 aa19.93■□□□□ 0.78
SCFD1-224ENST00000557713 RPAP1Q9BWH6 1393 aaPredicted RBP19.93■□□□□ 0.78
SCFD1-224ENST00000557713 IRF6O14896 467 aa19.92■□□□□ 0.78
SCFD1-224ENST00000557713 CIAO1O76071 339 aa19.92■□□□□ 0.78
SCFD1-224ENST00000557713 CETPP11597 493 aa19.92■□□□□ 0.78
SCFD1-224ENST00000557713 FAM151AQ8WW52 585 aa19.92■□□□□ 0.78
SCFD1-224ENST00000557713 UBTFL1P0CB47 393 aaPredicted RBP19.91■□□□□ 0.78
SCFD1-224ENST00000557713 PPIL2Q13356 520 aa19.91■□□□□ 0.78
SCFD1-224ENST00000557713 DCAF15Q66K64 600 aa19.91■□□□□ 0.78
SCFD1-224ENST00000557713 MIGA2Q7L4E1 593 aa19.91■□□□□ 0.78
SCFD1-224ENST00000557713 ZNF341Q9BYN7 854 aa19.91■□□□□ 0.78
SCFD1-224ENST00000557713 ZCCHC17Q9NP64 241 aaKnown RBP19.91■□□□□ 0.78
SCFD1-224ENST00000557713 NOB1Q9ULX3 412 aaKnown RBP19.91■□□□□ 0.78
SCFD1-224ENST00000557713 DAGLAQ9Y4D2 1042 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms