RNA–Protein interactions for RNA: ENST00000557599.5

PRKCH-227, Transcript of protein kinase C eta, human

TSL 3

Gene PRKCH, Length 746 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-227	ENST00000557599	LPIN2	Q92539	896 aa		12.82	□□□□□ -0.36
PRKCH-227	ENST00000557599	EAF2	Q96CJ1	260 aa	Predicted RBP	12.82	□□□□□ -0.36
PRKCH-227	ENST00000557599	GBA2	Q9HCG7	927 aa	Predicted RBP	12.82	□□□□□ -0.36
PRKCH-227	ENST00000557599	AKAP11	Q9UKA4	1901 aa		12.82	□□□□□ -0.36
PRKCH-227	ENST00000557599	USP17L3	A6NCW0	530 aa		12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	USP17L4	A6NCW7	530 aa		12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	TRIM6-TRIM34	B2RNG4	842 aa		12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	SLC10A3	P09131	477 aa		12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	CHRND	Q07001	517 aa		12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	TTC39A	Q5SRH9	613 aa		12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	RGMB	Q6NW40	437 aa		12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	USP17L1	Q7RTZ2	530 aa		12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	TXNRD3	Q86VQ6	643 aa		12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	OTUD7A	Q8TE49	926 aa	Predicted RBP	12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	ZBED3	Q96IU2	234 aa	Predicted RBP	12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	MYOZ2	Q9NPC6	264 aa		12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	SAGE1	Q9NXZ1	904 aa		12.81	□□□□□ -0.36
PRKCH-227	ENST00000557599	CASP8AP2	Q9UKL3	1982 aa		12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	USP17L8	P0C7I0	530 aa		12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	RGS19	P49795	217 aa		12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	STRIP1	Q5VSL9	837 aa		12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	DCPS	Q96C86	337 aa	Known RBP	12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	CDCA5	Q96FF9	252 aa		12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	DBNDD2	Q9BQY9	259 aa		12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	ZNF408	Q9H9D4	720 aa		12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	UPF2	Q9HAU5	1272 aa	Known RBP	12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	GNL3L	Q9NVN8	582 aa	Known RBP	12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	LEMD3	Q9Y2U8	911 aa		12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	MYO3B	Q8WXR4	1341 aa		12.8	□□□□□ -0.36
PRKCH-227	ENST00000557599	COL1A1	P02452	1464 aa	Predicted RBP	12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	CDC45	O75419	566 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	UQCRFS1P1	P0C7P4	283 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	MMP14	P50281	582 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	FKBP1B	P68106	108 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	UBE4A	Q14139	1066 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	SCARF1	Q14162	830 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	LRRFIP1	Q32MZ4	808 aa	Known RBP	12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	CAVIN4	Q5BKX8	364 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	ANGEL2	Q5VTE6	544 aa	Known RBP	12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	C15orf52	Q6ZUT6	534 aa	Known RBP	12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	VPS37D	Q86XT2	251 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	RILPL2	Q969X0	211 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	BEGAIN	Q9BUH8	593 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	COA1	Q9GZY4	146 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	TSKS	Q9UJT2	592 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	DBNL	Q9UJU6	430 aa	Known RBP	12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	SALL3	Q9BXA9	1300 aa		12.79	□□□□□ -0.36
PRKCH-227	ENST00000557599	BRCA2	P51587	3418 aa		12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	ATP5J	P18859	108 aa		12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	KLRK1	P26718	216 aa		12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	TIMM10	P62072	90 aa		12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	GRM1	Q13255	1194 aa		12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	RASAL3	Q86YV0	1011 aa		12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	SULF1	Q8IWU6	871 aa		12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	C2orf69	Q8N8R5	385 aa		12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	HELB	Q8NG08	1087 aa	Predicted RBP	12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	CCDC102A	Q96A19	550 aa		12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	XAGE2	Q96GT9	111 aa		12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	ZNF804B	A4D1E1	1349 aa		12.78	□□□□□ -0.36
PRKCH-227	ENST00000557599	SSC5D	A1L4H1	1573 aa		12.77	□□□□□ -0.36
PRKCH-227	ENST00000557599	HIP1	O00291	1037 aa		12.77	□□□□□ -0.37
PRKCH-227	ENST00000557599	WNT10B	O00744	389 aa		12.77	□□□□□ -0.37
PRKCH-227	ENST00000557599	NBPF9	Q3BBW0	867 aa		12.77	□□□□□ -0.37
PRKCH-227	ENST00000557599	RBM26	Q5T8P6	1007 aa	Known RBP	12.77	□□□□□ -0.37
PRKCH-227	ENST00000557599	TSHZ3	Q63HK5	1081 aa		12.77	□□□□□ -0.37
PRKCH-227	ENST00000557599	VGLL2	Q8N8G2	317 aa		12.77	□□□□□ -0.37
PRKCH-227	ENST00000557599	EVI5L	Q96CN4	794 aa		12.77	□□□□□ -0.37
PRKCH-227	ENST00000557599	AK9	Q5TCS8	1911 aa		12.76	□□□□□ -0.37
PRKCH-227	ENST00000557599	TAF5L	O75529	589 aa		12.76	□□□□□ -0.37
PRKCH-227	ENST00000557599	SDS	P20132	328 aa		12.76	□□□□□ -0.37
PRKCH-227	ENST00000557599	KIF23	Q02241	960 aa	Predicted RBP	12.76	□□□□□ -0.37
PRKCH-227	ENST00000557599	PI4K2B	Q8TCG2	481 aa		12.76	□□□□□ -0.37
PRKCH-227	ENST00000557599	CSRNP1	Q96S65	589 aa		12.76	□□□□□ -0.37
PRKCH-227	ENST00000557599	DNAJC2	Q99543	621 aa	Known RBP	12.76	□□□□□ -0.37
PRKCH-227	ENST00000557599	MXD3	Q9BW11	206 aa		12.76	□□□□□ -0.37
PRKCH-227	ENST00000557599	BOLA2	Q9H3K6	86 aa		12.76	□□□□□ -0.37
PRKCH-227	ENST00000557599	TLR7	Q9NYK1	1049 aa	Known RBP	12.76	□□□□□ -0.37
PRKCH-227	ENST00000557599	OTOF	Q9HC10	1997 aa		12.76	□□□□□ -0.37
PRKCH-227	ENST00000557599	CENPF	P49454	3210 aa		12.75	□□□□□ -0.37
PRKCH-227	ENST00000557599	FRAT2	O75474	233 aa	Predicted RBP	12.75	□□□□□ -0.37
PRKCH-227	ENST00000557599	GSPT1	P15170	499 aa	Known RBP	12.75	□□□□□ -0.37
PRKCH-227	ENST00000557599	FGFR2	P21802	821 aa		12.75	□□□□□ -0.37
PRKCH-227	ENST00000557599	MTMR14	Q8NCE2	650 aa		12.75	□□□□□ -0.37
PRKCH-227	ENST00000557599	RUFY2	Q8WXA3	655 aa		12.75	□□□□□ -0.37
PRKCH-227	ENST00000557599	MCOLN1	Q9GZU1	580 aa		12.75	□□□□□ -0.37
PRKCH-227	ENST00000557599	DIAPH3	Q9NSV4	1193 aa		12.75	□□□□□ -0.37
PRKCH-227	ENST00000557599	IL1R1	P14778	569 aa		12.74	□□□□□ -0.37
PRKCH-227	ENST00000557599	ADORA1	P30542	326 aa		12.74	□□□□□ -0.37
PRKCH-227	ENST00000557599	ZNF157	P51786	506 aa	Predicted RBP	12.74	□□□□□ -0.37
PRKCH-227	ENST00000557599	TTF1	Q15361	905 aa	Predicted RBP	12.74	□□□□□ -0.37
PRKCH-227	ENST00000557599	ZNF804A	Q7Z570	1209 aa		12.74	□□□□□ -0.37
PRKCH-227	ENST00000557599	TICAM2	Q86XR7	235 aa		12.74	□□□□□ -0.37
PRKCH-227	ENST00000557599	REM2	Q8IYK8	340 aa	Predicted RBP	12.74	□□□□□ -0.37
PRKCH-227	ENST00000557599	CERS5	Q8N5B7	392 aa		12.74	□□□□□ -0.37
PRKCH-227	ENST00000557599	ZNF512B	Q96KM6	892 aa	Predicted RBP	12.74	□□□□□ -0.37
PRKCH-227	ENST00000557599	HAUS7	Q99871	368 aa		12.74	□□□□□ -0.37
PRKCH-227	ENST00000557599	FSD1	Q9BTV5	496 aa		12.74	□□□□□ -0.37
PRKCH-227	ENST00000557599	BACH2	Q9BYV9	841 aa		12.74	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms