RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 FKBP5Q13451 457 aaPredicted RBP10.43□□□□□ -0.74
CCDC88C-214ENST00000557507 CCL15Q16663 113 aa10.43□□□□□ -0.74
CCDC88C-214ENST00000557507 LINS1Q8NG48 757 aa10.43□□□□□ -0.74
CCDC88C-214ENST00000557507 SH3TC2Q8TF17 1288 aa10.43□□□□□ -0.74
CCDC88C-214ENST00000557507 ZNF594Q96JF6 807 aaPredicted RBP10.43□□□□□ -0.74
CCDC88C-214ENST00000557507 TMEM39BQ9GZU3 492 aa10.43□□□□□ -0.74
CCDC88C-214ENST00000557507 TDRD3Q9H7E2 651 aaKnown RBP10.43□□□□□ -0.74
CCDC88C-214ENST00000557507 PRKRIP1Q9H875 184 aaPredicted RBP10.43□□□□□ -0.74
CCDC88C-214ENST00000557507 CHMP3Q9Y3E7 222 aa10.43□□□□□ -0.74
CCDC88C-214ENST00000557507 TCP10L2B9ZVM9 353 aa10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 H0YGN5 161 aa10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 IFIT5Q13325 482 aaKnown RBP10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 TNFAIP1Q13829 316 aa10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 SLC4A8Q2Y0W8 1093 aa10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 EPHA10Q5JZY3 1008 aa10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 MFSD14BQ5SR56 506 aa10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 OTUD5Q96G74 571 aa10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 ZFYVE28Q9HCC9 887 aa10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 TTF2Q9UNY4 1162 aaKnown RBP10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 MYH2Q9UKX2 1941 aa10.42□□□□□ -0.74
CCDC88C-214ENST00000557507 LAMA3Q16787 3333 aa10.41□□□□□ -0.74
CCDC88C-214ENST00000557507 PLIN1O60240 522 aa10.41□□□□□ -0.74
CCDC88C-214ENST00000557507 GYG1P46976 350 aa10.41□□□□□ -0.74
CCDC88C-214ENST00000557507 GTF2A2P52657 109 aa10.41□□□□□ -0.74
CCDC88C-214ENST00000557507 GRIK5Q16478 980 aa10.41□□□□□ -0.74
CCDC88C-214ENST00000557507 DZIP1LQ8IYY4 767 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-214ENST00000557507 TDRD7Q8NHU6 1098 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-214ENST00000557507 SHISA4Q96DD7 197 aa10.41□□□□□ -0.74
CCDC88C-214ENST00000557507 SERPINA10Q9UK55 444 aa10.41□□□□□ -0.74
CCDC88C-214ENST00000557507 SNCAIPQ9Y6H5 919 aa10.41□□□□□ -0.74
CCDC88C-214ENST00000557507 DOCK1Q14185 1865 aa10.4□□□□□ -0.74
CCDC88C-214ENST00000557507 SPDYE5A6NIY4 337 aa10.4□□□□□ -0.74
CCDC88C-214ENST00000557507 F6X3S4 739 aa10.4□□□□□ -0.74
CCDC88C-214ENST00000557507 CRKP46108 304 aa10.4□□□□□ -0.74
CCDC88C-214ENST00000557507 MAP3K9P80192 1104 aa10.4□□□□□ -0.74
CCDC88C-214ENST00000557507 LACTBP83111 547 aaPredicted RBP10.4□□□□□ -0.74
CCDC88C-214ENST00000557507 LMBR1LQ6UX01 489 aa10.4□□□□□ -0.74
CCDC88C-214ENST00000557507 CHRDL2Q6WN34 429 aa10.4□□□□□ -0.74
CCDC88C-214ENST00000557507 NBPF11Q86T75 865 aa10.4□□□□□ -0.74
CCDC88C-214ENST00000557507 CSADQ9Y600 493 aa10.4□□□□□ -0.74
CCDC88C-214ENST00000557507 ATAD5Q96QE3 1844 aa10.4□□□□□ -0.75
CCDC88C-214ENST00000557507 FANCIQ9NVI1 1328 aa10.39□□□□□ -0.75
CCDC88C-214ENST00000557507 BTBD19C9JJ37 291 aa10.39□□□□□ -0.75
CCDC88C-214ENST00000557507 TLR2O60603 784 aa10.39□□□□□ -0.75
CCDC88C-214ENST00000557507 ECM2O94769 699 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-214ENST00000557507 CTGFP29279 349 aa10.39□□□□□ -0.75
CCDC88C-214ENST00000557507 CACNB3P54284 484 aa10.39□□□□□ -0.75
CCDC88C-214ENST00000557507 MTFR1Q15390 333 aa10.39□□□□□ -0.75
CCDC88C-214ENST00000557507 BEND3Q5T5X7 828 aa10.39□□□□□ -0.75
CCDC88C-214ENST00000557507 LDHAL6AQ6ZMR3 332 aa10.39□□□□□ -0.75
CCDC88C-214ENST00000557507 WWC1Q8IX03 1113 aa10.39□□□□□ -0.75
CCDC88C-214ENST00000557507 CNNM1Q9NRU3 951 aa10.39□□□□□ -0.75
CCDC88C-214ENST00000557507 HIBADHP31937 336 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 ARHGEF6Q15052 776 aa10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 CCDC27Q2M243 656 aa10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 CCDC57Q2TAC2 916 aa10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 TAF7LQ5H9L4 462 aa10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 ZKSCAN4Q969J2 545 aaPredicted RBP10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 FAM84BQ96KN1 310 aaPredicted RBP10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 WRNIP1Q96S55 665 aa10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 PUS3Q9BZE2 481 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 IQSEC3Q9UPP2 1182 aaPredicted RBP10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 COL6A3P12111 3177 aa10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 RPAP1Q9BWH6 1393 aaPredicted RBP10.38□□□□□ -0.75
CCDC88C-214ENST00000557507 IL16Q14005 1332 aa10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 ADGRA2Q96PE1 1338 aa10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 GRM8O00222 908 aa10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 IRF6O14896 467 aa10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 CETPP11597 493 aa10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 TNNI2P48788 182 aa10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 UBE4AQ14139 1066 aa10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 CCDC184Q52MB2 194 aa10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 DIEXFQ68CQ4 756 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 ERO1BQ86YB8 467 aa10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 ZCCHC17Q9NP64 241 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 RBM27Q9P2N5 1060 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-214ENST00000557507 VAMP4O75379 141 aa10.36□□□□□ -0.75
CCDC88C-214ENST00000557507 CHAF1AQ13111 956 aaPredicted RBP10.36□□□□□ -0.75
CCDC88C-214ENST00000557507 PPIL2Q13356 520 aa10.36□□□□□ -0.75
CCDC88C-214ENST00000557507 SNAPC2Q13487 334 aa10.36□□□□□ -0.75
CCDC88C-214ENST00000557507 KIF22Q14807 665 aa10.36□□□□□ -0.75
CCDC88C-214ENST00000557507 UBE2Q1Q7Z7E8 422 aa10.36□□□□□ -0.75
CCDC88C-214ENST00000557507 KAZALD1Q96I82 304 aa10.36□□□□□ -0.75
CCDC88C-214ENST00000557507 TRIM47Q96LD4 638 aa10.36□□□□□ -0.75
CCDC88C-214ENST00000557507 CPA4Q9UI42 421 aa10.36□□□□□ -0.75
CCDC88C-214ENST00000557507 LOC285556D6RIA3 1793 aa10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 GNRH1P01148 92 aa10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 OSBPP22059 807 aa10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 PRMT2P55345 433 aa10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 C17orf99Q6UX52 265 aa10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 TEKT1Q969V4 418 aa10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 SUCLG2Q96I99 432 aa10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 PRO3102Q9H379 93 aa10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 SRRDQ9UH36 339 aa10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 DDX60LQ5H9U9 1706 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 PLXNB2O15031 1838 aa10.35□□□□□ -0.75
CCDC88C-214ENST00000557507 WDHD1O75717 1129 aaPredicted RBP10.34□□□□□ -0.75
CCDC88C-214ENST00000557507 INPP5BP32019 993 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms