RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 USP2O75604 605 aaPredicted RBP13.88□□□□□ -0.19
CCDC88C-213ENST00000557455 CRKP46108 304 aa13.88□□□□□ -0.19
CCDC88C-213ENST00000557455 CDCA7LQ96GN5 454 aa13.88□□□□□ -0.19
CCDC88C-213ENST00000557455 CFHR5Q9BXR6 569 aa13.88□□□□□ -0.19
CCDC88C-213ENST00000557455 SMC4Q9NTJ3 1288 aa13.88□□□□□ -0.19
CCDC88C-213ENST00000557455 TCP10L2B9ZVM9 353 aa13.87□□□□□ -0.19
CCDC88C-213ENST00000557455 FKTNO75072 461 aa13.87□□□□□ -0.19
CCDC88C-213ENST00000557455 IFIT1P09914 478 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-213ENST00000557455 TNNI2P48788 182 aa13.87□□□□□ -0.19
CCDC88C-213ENST00000557455 BCAMP50895 628 aa13.87□□□□□ -0.19
CCDC88C-213ENST00000557455 SOX10P56693 466 aa13.87□□□□□ -0.19
CCDC88C-213ENST00000557455 PUM3Q15397 648 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-213ENST00000557455 GRIK5Q16478 980 aa13.87□□□□□ -0.19
CCDC88C-213ENST00000557455 IFNL1Q8IU54 200 aa13.87□□□□□ -0.19
CCDC88C-213ENST00000557455 ANKRD13AQ8IZ07 590 aa13.87□□□□□ -0.19
CCDC88C-213ENST00000557455 HPS5Q9UPZ3 1129 aa13.87□□□□□ -0.19
CCDC88C-213ENST00000557455 TNRC18O15417 2968 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-213ENST00000557455 HDLBPQ00341 1268 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-213ENST00000557455 R3HDMLQ9H3Y0 253 aa13.86□□□□□ -0.19
CCDC88C-213ENST00000557455 KIF16BQ96L93 1317 aa13.86□□□□□ -0.19
CCDC88C-213ENST00000557455 EYA2O00167 538 aa13.85□□□□□ -0.19
CCDC88C-213ENST00000557455 CT47B1P0C2W7 299 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-213ENST00000557455 FGFR2P21802 821 aa13.85□□□□□ -0.19
CCDC88C-213ENST00000557455 RFX5P48382 616 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-213ENST00000557455 OTUD7BQ6GQQ9 843 aa13.85□□□□□ -0.19
CCDC88C-213ENST00000557455 TRMT2AQ8IZ69 625 aaKnown RBP13.85□□□□□ -0.19
CCDC88C-213ENST00000557455 TEKT1Q969V4 418 aa13.85□□□□□ -0.19
CCDC88C-213ENST00000557455 TEPSINQ96N21 525 aa13.85□□□□□ -0.19
CCDC88C-213ENST00000557455 TMEM39BQ9GZU3 492 aa13.85□□□□□ -0.19
CCDC88C-213ENST00000557455 IGF2BP3O00425 579 aaKnown RBP eCLIP13.84□□□□□ -0.19
CCDC88C-213ENST00000557455 UBTFL1P0CB47 393 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-213ENST00000557455 SLC5A1P13866 664 aa13.84□□□□□ -0.19
CCDC88C-213ENST00000557455 FBXO46Q6PJ61 603 aaPredicted RBP13.84□□□□□ -0.19
CCDC88C-213ENST00000557455 CDAN1Q8IWY9 1227 aa13.84□□□□□ -0.19
CCDC88C-213ENST00000557455 LPIN2Q92539 896 aa13.84□□□□□ -0.19
CCDC88C-213ENST00000557455 MRIQ9BWK5 157 aa13.84□□□□□ -0.19
CCDC88C-213ENST00000557455 ELP3Q9H9T3 547 aa13.84□□□□□ -0.19
CCDC88C-213ENST00000557455 TMOD2Q9NZR1 351 aa13.84□□□□□ -0.19
CCDC88C-213ENST00000557455 NOB1Q9ULX3 412 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-213ENST00000557455 MAST3O60307 1309 aa13.84□□□□□ -0.19
CCDC88C-213ENST00000557455 GJA5P36382 358 aa13.83□□□□□ -0.2
CCDC88C-213ENST00000557455 OPTNQ96CV9 577 aa13.83□□□□□ -0.2
CCDC88C-213ENST00000557455 ZDHHC15Q96MV8 337 aa13.83□□□□□ -0.2
CCDC88C-213ENST00000557455 SUGT1Q9Y2Z0 365 aa13.83□□□□□ -0.2
CCDC88C-213ENST00000557455 AK9Q5TCS8 1911 aa13.83□□□□□ -0.2
CCDC88C-213ENST00000557455 CACNB3P54284 484 aa13.82□□□□□ -0.2
CCDC88C-213ENST00000557455 MAP3K9P80192 1104 aa13.82□□□□□ -0.2
CCDC88C-213ENST00000557455 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.82□□□□□ -0.2
CCDC88C-213ENST00000557455 ATG9AQ7Z3C6 839 aa13.82□□□□□ -0.2
CCDC88C-213ENST00000557455 API5Q9BZZ5 524 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-213ENST00000557455 SIL1Q9H173 461 aa13.82□□□□□ -0.2
CCDC88C-213ENST00000557455 FBXO3Q9UK99 471 aa13.82□□□□□ -0.2
CCDC88C-213ENST00000557455 HDAC5Q9UQL6 1122 aa13.82□□□□□ -0.2
CCDC88C-213ENST00000557455 TESPA1A2RU30 521 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 CIAO1O76071 339 aa13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 CRHR2Q13324 411 aa13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 VGLL4Q14135 290 aa13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 APOBEC3HQ6NTF7 200 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 HHIPL2Q6UWX4 724 aa13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 WDR66Q8TBY9 1149 aa13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 PTPN18Q99952 460 aa13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 CEP126Q9P2H0 1117 aa13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 TRIM17Q9Y577 477 aa13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 CSADQ9Y600 493 aa13.81□□□□□ -0.2
CCDC88C-213ENST00000557455 CCER2I3L3R5 266 aa13.8□□□□□ -0.2
CCDC88C-213ENST00000557455 ATP2B3Q16720 1220 aa13.8□□□□□ -0.2
CCDC88C-213ENST00000557455 FKBP1CQ5VVH2 108 aa13.8□□□□□ -0.2
CCDC88C-213ENST00000557455 FAM83AQ86UY5 434 aa13.8□□□□□ -0.2
CCDC88C-213ENST00000557455 CNKSR2Q8WXI2 1034 aa13.8□□□□□ -0.2
CCDC88C-213ENST00000557455 HOOK2Q96ED9 719 aa13.8□□□□□ -0.2
CCDC88C-213ENST00000557455 ERO1AQ96HE7 468 aa13.8□□□□□ -0.2
CCDC88C-213ENST00000557455 GNL3LQ9NVN8 582 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-213ENST00000557455 LRRFIP2Q9Y608 721 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-213ENST00000557455 PDE4DIPQ5VU43 2346 aa13.8□□□□□ -0.2
CCDC88C-213ENST00000557455 IL15P40933 162 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-213ENST00000557455 GTF2A2P52657 109 aa13.79□□□□□ -0.2
CCDC88C-213ENST00000557455 OTOP1Q7RTM1 612 aa13.79□□□□□ -0.2
CCDC88C-213ENST00000557455 OTUD5Q96G74 571 aa13.79□□□□□ -0.2
CCDC88C-213ENST00000557455 MS4A4AQ96JQ5 239 aa13.79□□□□□ -0.2
CCDC88C-213ENST00000557455 MYH2Q9UKX2 1941 aa13.78□□□□□ -0.2
CCDC88C-213ENST00000557455 CCL15-CCL14A0A0B4J2E2 113 aa13.78□□□□□ -0.2
CCDC88C-213ENST00000557455 RARSP54136 660 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-213ENST00000557455 SP3Q02447 781 aa13.78□□□□□ -0.2
CCDC88C-213ENST00000557455 CCL15Q16663 113 aa13.78□□□□□ -0.2
CCDC88C-213ENST00000557455 CD99L2Q8TCZ2 262 aa13.78□□□□□ -0.2
CCDC88C-213ENST00000557455 WRNIP1Q96S55 665 aa13.78□□□□□ -0.2
CCDC88C-213ENST00000557455 PA2G4Q9UQ80 394 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-213ENST00000557455 DCAF15Q66K64 600 aa13.77□□□□□ -0.21
CCDC88C-213ENST00000557455 BRI3BPQ8WY22 251 aa13.77□□□□□ -0.21
CCDC88C-213ENST00000557455 ARHGAP45Q92619 1136 aa13.77□□□□□ -0.21
CCDC88C-213ENST00000557455 MEIS3Q99687 375 aa13.77□□□□□ -0.21
CCDC88C-213ENST00000557455 RPAP1Q9BWH6 1393 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-213ENST00000557455 ZFYVE28Q9HCC9 887 aa13.77□□□□□ -0.21
CCDC88C-213ENST00000557455 COPRSQ9NQ92 184 aa13.77□□□□□ -0.21
CCDC88C-213ENST00000557455 DENND2AQ9ULE3 1009 aa13.77□□□□□ -0.21
CCDC88C-213ENST00000557455 DAGLAQ9Y4D2 1042 aa13.77□□□□□ -0.21
CCDC88C-213ENST00000557455 SPDYE5A6NIY4 337 aa13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 SEMA3EO15041 775 aa13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 LDHBP07195 334 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms