RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 COL1A1P02452 1464 aaPredicted RBP13.12□□□□□ -0.31
LINC00239-201ENST00000556973 CELF2O95319 508 aaKnown RBP13.12□□□□□ -0.31
LINC00239-201ENST00000556973 LDHBP07195 334 aaKnown RBP13.12□□□□□ -0.31
LINC00239-201ENST00000556973 RASGRF1Q13972 1273 aa13.12□□□□□ -0.31
LINC00239-201ENST00000556973 TTC39AQ5SRH9 613 aa13.12□□□□□ -0.31
LINC00239-201ENST00000556973 SPTY2D1Q68D10 685 aaPredicted RBP13.12□□□□□ -0.31
LINC00239-201ENST00000556973 HHIPL2Q6UWX4 724 aa13.12□□□□□ -0.31
LINC00239-201ENST00000556973 APOBEC3FQ8IUX4 373 aaKnown RBP13.12□□□□□ -0.31
LINC00239-201ENST00000556973 CLASRPQ8N2M8 674 aaKnown RBP13.12□□□□□ -0.31
LINC00239-201ENST00000556973 SPATA5Q8NB90 893 aa13.12□□□□□ -0.31
LINC00239-201ENST00000556973 ZNF512BQ96KM6 892 aaPredicted RBP13.12□□□□□ -0.31
LINC00239-201ENST00000556973 CCDC8Q9H0W5 538 aaPredicted RBP13.12□□□□□ -0.31
LINC00239-201ENST00000556973 HMG20BQ9P0W2 317 aa13.12□□□□□ -0.31
LINC00239-201ENST00000556973 SUPT16HQ9Y5B9 1047 aaKnown RBP13.12□□□□□ -0.31
LINC00239-201ENST00000556973 PCDHAC2Q9Y5I4 1007 aa13.12□□□□□ -0.31
LINC00239-201ENST00000556973 KLRG1Q96E93 195 aa13.11□□□□□ -0.31
LINC00239-201ENST00000556973 CDCA5Q96FF9 252 aa13.11□□□□□ -0.31
LINC00239-201ENST00000556973 ZDHHC15Q96MV8 337 aa13.11□□□□□ -0.31
LINC00239-201ENST00000556973 ZNF408Q9H9D4 720 aa13.11□□□□□ -0.31
LINC00239-201ENST00000556973 IL1RAPL2Q9NP60 686 aa13.11□□□□□ -0.31
LINC00239-201ENST00000556973 ABCF2Q9UG63 623 aa13.11□□□□□ -0.31
LINC00239-201ENST00000556973 DBNLQ9UJU6 430 aaKnown RBP13.11□□□□□ -0.31
LINC00239-201ENST00000556973 ABT1Q9ULW3 272 aaKnown RBP13.11□□□□□ -0.31
LINC00239-201ENST00000556973 APBB1O00213 710 aa13.1□□□□□ -0.31
LINC00239-201ENST00000556973 PRDX5P30044 214 aa13.1□□□□□ -0.31
LINC00239-201ENST00000556973 MCAMP43121 646 aa13.1□□□□□ -0.31
LINC00239-201ENST00000556973 DEFB115Q30KQ5 88 aa13.1□□□□□ -0.31
LINC00239-201ENST00000556973 DLK2Q6UY11 383 aa13.1□□□□□ -0.31
LINC00239-201ENST00000556973 AACSQ86V21 672 aa13.1□□□□□ -0.31
LINC00239-201ENST00000556973 C2orf69Q8N8R5 385 aa13.1□□□□□ -0.31
LINC00239-201ENST00000556973 DEFB129Q9H1M3 183 aa13.1□□□□□ -0.31
LINC00239-201ENST00000556973 DCTPP1Q9H773 170 aa13.1□□□□□ -0.31
LINC00239-201ENST00000556973 TDRD3Q9H7E2 651 aaKnown RBP13.1□□□□□ -0.31
LINC00239-201ENST00000556973 ZNF70Q9UC06 446 aaPredicted RBP13.1□□□□□ -0.31
LINC00239-201ENST00000556973 SCAF8Q9UPN6 1271 aaKnown RBP13.1□□□□□ -0.31
LINC00239-201ENST00000556973 PCDHB15Q9Y5E8 787 aa13.1□□□□□ -0.31
LINC00239-201ENST00000556973 TLL2Q9Y6L7 1015 aa13.1□□□□□ -0.31
LINC00239-201ENST00000556973 AKAP11Q9UKA4 1901 aa13.09□□□□□ -0.31
LINC00239-201ENST00000556973 CLRN2A0PK11 232 aa13.09□□□□□ -0.31
LINC00239-201ENST00000556973 RASSF10A6NK89 507 aa13.09□□□□□ -0.31
LINC00239-201ENST00000556973 IFIT2P09913 472 aaKnown RBP13.09□□□□□ -0.31
LINC00239-201ENST00000556973 SPDYE2Q495Y8 402 aa13.09□□□□□ -0.31
LINC00239-201ENST00000556973 ERICH6Q7L0X2 663 aa13.09□□□□□ -0.31
LINC00239-201ENST00000556973 SAPCD2Q86UD0 394 aa13.09□□□□□ -0.31
LINC00239-201ENST00000556973 SLF2Q8IX21 1173 aa13.09□□□□□ -0.31
LINC00239-201ENST00000556973 LRRCC1Q9C099 1032 aa13.09□□□□□ -0.31
LINC00239-201ENST00000556973 PPP2R3BQ9Y5P8 575 aa13.09□□□□□ -0.31
LINC00239-201ENST00000556973 MYH2Q9UKX2 1941 aa13.09□□□□□ -0.31
LINC00239-201ENST00000556973 CNTNAP1P78357 1384 aa13.08□□□□□ -0.31
LINC00239-201ENST00000556973 IGSF3O75054 1194 aa13.08□□□□□ -0.32
LINC00239-201ENST00000556973 NF2P35240 595 aa13.08□□□□□ -0.32
LINC00239-201ENST00000556973 TNFAIP1Q13829 316 aa13.08□□□□□ -0.32
LINC00239-201ENST00000556973 APOBEC3HQ6NTF7 200 aaKnown RBP13.08□□□□□ -0.32
LINC00239-201ENST00000556973 FAM163AQ96GL9 167 aaPredicted RBP13.08□□□□□ -0.32
LINC00239-201ENST00000556973 HHIPL1Q96JK4 782 aa13.08□□□□□ -0.32
LINC00239-201ENST00000556973 VEZTQ9HBM0 779 aa13.08□□□□□ -0.32
LINC00239-201ENST00000556973 GBA2Q9HCG7 927 aaPredicted RBP13.08□□□□□ -0.32
LINC00239-201ENST00000556973 TLR7Q9NYK1 1049 aaKnown RBP13.08□□□□□ -0.32
LINC00239-201ENST00000556973 MKRN1Q9UHC7 482 aaKnown RBP13.08□□□□□ -0.32
LINC00239-201ENST00000556973 TNNI2P48788 182 aa13.07□□□□□ -0.32
LINC00239-201ENST00000556973 FKBP1BP68106 108 aa13.07□□□□□ -0.32
LINC00239-201ENST00000556973 SUPT20HL1Q3ZLR7 823 aa13.07□□□□□ -0.32
LINC00239-201ENST00000556973 PRAMEF18Q5VWM3 479 aa13.07□□□□□ -0.32
LINC00239-201ENST00000556973 PI16Q6UXB8 463 aa13.07□□□□□ -0.32
LINC00239-201ENST00000556973 TBC1D9Q6ZT07 1266 aa13.07□□□□□ -0.32
LINC00239-201ENST00000556973 DZIP1Q86YF9 867 aaKnown RBP13.07□□□□□ -0.32
LINC00239-201ENST00000556973 SNRKQ9NRH2 765 aa13.07□□□□□ -0.32
LINC00239-201ENST00000556973 TMOD2Q9NZR1 351 aa13.07□□□□□ -0.32
LINC00239-201ENST00000556973 LRP2BPQ9P2M1 347 aa13.07□□□□□ -0.32
LINC00239-201ENST00000556973 AOX1Q06278 1338 aa13.07□□□□□ -0.32
LINC00239-201ENST00000556973 CYP2E1P05181 493 aaPredicted RBP13.06□□□□□ -0.32
LINC00239-201ENST00000556973 LDHCP07864 332 aa13.06□□□□□ -0.32
LINC00239-201ENST00000556973 ECE1P42892 770 aa13.06□□□□□ -0.32
LINC00239-201ENST00000556973 ZAP70P43403 619 aa13.06□□□□□ -0.32
LINC00239-201ENST00000556973 GSTO1P78417 241 aa13.06□□□□□ -0.32
LINC00239-201ENST00000556973 MECOMQ03112 1051 aa13.06□□□□□ -0.32
LINC00239-201ENST00000556973 RASA3Q14644 834 aa13.06□□□□□ -0.32
LINC00239-201ENST00000556973 DIXDC1Q155Q3 683 aa13.06□□□□□ -0.32
LINC00239-201ENST00000556973 FKBP1CQ5VVH2 108 aa13.06□□□□□ -0.32
LINC00239-201ENST00000556973 JMYQ8N9B5 988 aa13.06□□□□□ -0.32
LINC00239-201ENST00000556973 DAGLAQ9Y4D2 1042 aa13.06□□□□□ -0.32
LINC00239-201ENST00000556973 TCP10L2B9ZVM9 353 aa13.05□□□□□ -0.32
LINC00239-201ENST00000556973 VEGFBP49765 207 aa13.05□□□□□ -0.32
LINC00239-201ENST00000556973 HUNKP57058 714 aa13.05□□□□□ -0.32
LINC00239-201ENST00000556973 HDAC1Q13547 482 aaPredicted RBP13.05□□□□□ -0.32
LINC00239-201ENST00000556973 CDC42EP5Q6NZY7 148 aa13.05□□□□□ -0.32
LINC00239-201ENST00000556973 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.05□□□□□ -0.32
LINC00239-201ENST00000556973 NSUN4Q96CB9 384 aaKnown RBP13.05□□□□□ -0.32
LINC00239-201ENST00000556973 BCL11AQ9H165 835 aa13.05□□□□□ -0.32
LINC00239-201ENST00000556973 USP40Q9NVE5 1235 aa13.05□□□□□ -0.32
LINC00239-201ENST00000556973 RAI14Q9P0K7 980 aa13.05□□□□□ -0.32
LINC00239-201ENST00000556973 GAKO14976 1311 aa13.05□□□□□ -0.32
LINC00239-201ENST00000556973 PAPPA2Q9BXP8 1791 aa13.04□□□□□ -0.32
LINC00239-201ENST00000556973 MYO5AQ9Y4I1 1855 aaKnown RBP13.04□□□□□ -0.32
LINC00239-201ENST00000556973 SMARCA5O60264 1052 aaPredicted RBP13.04□□□□□ -0.32
LINC00239-201ENST00000556973 ARMC9Q7Z3E5 817 aa13.04□□□□□ -0.32
LINC00239-201ENST00000556973 FAM83AQ86UY5 434 aa13.04□□□□□ -0.32
LINC00239-201ENST00000556973 EXOC6Q8TAG9 804 aa13.04□□□□□ -0.32
LINC00239-201ENST00000556973 GCC1Q96CN9 775 aa13.04□□□□□ -0.32
LINC00239-201ENST00000556973 MROH7-TTC4A0A0A0MT08 1334 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms