RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 PRDX5P30044 214 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 ANKRD45Q5TZF3 282 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 SPTY2D1Q68D10 685 aaPredicted RBP14□□□□□ -0.17
CCDC88C-212ENST00000556767 TBC1D9Q6ZT07 1266 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 ERICH6Q7L0X2 663 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 CDC37L1Q7L3B6 337 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 USP48Q86UV5 1035 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 DZIP1Q86YF9 867 aaKnown RBP14□□□□□ -0.17
CCDC88C-212ENST00000556767 SULF1Q8IWU6 871 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 TEKT1Q969V4 418 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 GCC1Q96CN9 775 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 PGAP2Q9UHJ9 254 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 SERPINA10Q9UK55 444 aa14□□□□□ -0.17
CCDC88C-212ENST00000556767 KRT26Q7Z3Y9 468 aa13.99□□□□□ -0.17
CCDC88C-212ENST00000556767 ZNF512BQ96KM6 892 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-212ENST00000556767 PRMT6Q96LA8 375 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-212ENST00000556767 RAI14Q9P0K7 980 aa13.99□□□□□ -0.17
CCDC88C-212ENST00000556767 LRP2BPQ9P2M1 347 aa13.99□□□□□ -0.17
CCDC88C-212ENST00000556767 SCAF8Q9UPN6 1271 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-212ENST00000556767 CLRN2A0PK11 232 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 SPDYE2BA6NHP3 402 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 ADM5C9JUS6 153 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 TRAF5O00463 557 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 ZBTB22O15209 634 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 ITGBL1O95965 494 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 IGHDP01880 384 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 NEFLP07196 543 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 SPDYE6P0CI01 402 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 ZAP70P43403 619 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 HDLBPQ00341 1268 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 DIXDC1Q155Q3 683 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 B4GALNT3Q6L9W6 998 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 MTMR14Q8NCE2 650 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 DNAJC2Q99543 621 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 ZNF408Q9H9D4 720 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 VEZTQ9HBM0 779 aa13.98□□□□□ -0.17
CCDC88C-212ENST00000556767 HSPA6P17066 643 aa13.97□□□□□ -0.17
CCDC88C-212ENST00000556767 FMR1Q06787 632 aaKnown RBP eCLIP13.97□□□□□ -0.17
CCDC88C-212ENST00000556767 GPATCH3Q96I76 525 aa13.97□□□□□ -0.17
CCDC88C-212ENST00000556767 ZBED3Q96IU2 234 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-212ENST00000556767 TDRD3Q9H7E2 651 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-212ENST00000556767 NDUFB9Q9Y6M9 179 aa13.97□□□□□ -0.17
CCDC88C-212ENST00000556767 POLR2AP24928 1970 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 CYP2E1P05181 493 aaPredicted RBP13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 APLP1P51693 650 aa13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 MECOMQ03112 1051 aa13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 HHIPL2Q6UWX4 724 aa13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 DLK2Q6UY11 383 aa13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 APOBEC3FQ8IUX4 373 aaKnown RBP13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 SLF2Q8IX21 1173 aa13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 ZDHHC15Q96MV8 337 aa13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 MRIQ9BWK5 157 aa13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 BOLA2Q9H3K6 86 aa13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 ECHDC1Q9NTX5 307 aa13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 TMOD2Q9NZR1 351 aa13.96□□□□□ -0.17
CCDC88C-212ENST00000556767 AOX1Q06278 1338 aa13.95□□□□□ -0.18
CCDC88C-212ENST00000556767 PASKQ96RG2 1323 aa13.95□□□□□ -0.18
CCDC88C-212ENST00000556767 PITPNM2Q9BZ72 1349 aa13.95□□□□□ -0.18
CCDC88C-212ENST00000556767 IDH1O75874 414 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-212ENST00000556767 ATP5JP18859 108 aa13.95□□□□□ -0.18
CCDC88C-212ENST00000556767 GSTO1P78417 241 aa13.95□□□□□ -0.18
CCDC88C-212ENST00000556767 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.95□□□□□ -0.18
CCDC88C-212ENST00000556767 PIH1D3Q9NQM4 214 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-212ENST00000556767 ZNF70Q9UC06 446 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-212ENST00000556767 DAGLAQ9Y4D2 1042 aa13.95□□□□□ -0.18
CCDC88C-212ENST00000556767 AKAP11Q9UKA4 1901 aa13.95□□□□□ -0.18
CCDC88C-212ENST00000556767 GOLIM4O00461 696 aa13.94□□□□□ -0.18
CCDC88C-212ENST00000556767 CELF2O95319 508 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-212ENST00000556767 LDHCP07864 332 aa13.94□□□□□ -0.18
CCDC88C-212ENST00000556767 TTF1Q15361 905 aaPredicted RBP13.94□□□□□ -0.18
CCDC88C-212ENST00000556767 SPDYE2Q495Y8 402 aa13.94□□□□□ -0.18
CCDC88C-212ENST00000556767 PRAMEF18Q5VWM3 479 aa13.94□□□□□ -0.18
CCDC88C-212ENST00000556767 TSHZ3Q63HK5 1081 aa13.94□□□□□ -0.18
CCDC88C-212ENST00000556767 SMC5Q8IY18 1101 aa13.94□□□□□ -0.18
CCDC88C-212ENST00000556767 LNPKQ9C0E8 428 aa13.94□□□□□ -0.18
CCDC88C-212ENST00000556767 ANTXR1Q9H6X2 564 aa13.94□□□□□ -0.18
CCDC88C-212ENST00000556767 TMEM88BA6NKF7 163 aa13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 TCP10L2B9ZVM9 353 aa13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 CACNB3P54284 484 aa13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 HTRA3P83110 453 aa13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 TNFAIP1Q13829 316 aa13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 NAA16Q6N069 864 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 APOBEC3HQ6NTF7 200 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 OTUD7AQ8TE49 926 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 NSUN4Q96CB9 384 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 CDCA5Q96FF9 252 aa13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 NOL10Q9BSC4 688 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 USP40Q9NVE5 1235 aa13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 ABT1Q9ULW3 272 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-212ENST00000556767 MROH7-TTC4A0A0A0MT08 1334 aa13.92□□□□□ -0.18
CCDC88C-212ENST00000556767 ECM29Q5VYK3 1845 aa13.92□□□□□ -0.18
CCDC88C-212ENST00000556767 MYH2Q9UKX2 1941 aa13.92□□□□□ -0.18
CCDC88C-212ENST00000556767 MX1P20591 662 aa13.92□□□□□ -0.18
CCDC88C-212ENST00000556767 BTDP43251 543 aa13.92□□□□□ -0.18
CCDC88C-212ENST00000556767 TNNI2P48788 182 aa13.92□□□□□ -0.18
CCDC88C-212ENST00000556767 MAP3K12Q12852 859 aa13.92□□□□□ -0.18
CCDC88C-212ENST00000556767 EDC3Q96F86 508 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-212ENST00000556767 HAUS7Q99871 368 aa13.92□□□□□ -0.18
CCDC88C-212ENST00000556767 DEFB129Q9H1M3 183 aa13.92□□□□□ -0.18
CCDC88C-212ENST00000556767 PAG1Q9NWQ8 432 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms