RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 SLC5A1P13866 664 aa14.02□□□□□ -0.16
CCDC88C-211ENST00000556726 ATG9AQ7Z3C6 839 aa14.02□□□□□ -0.16
CCDC88C-211ENST00000556726 DSCC1Q9BVC3 393 aa14.02□□□□□ -0.16
CCDC88C-211ENST00000556726 WWC3Q9ULE0 1092 aa14.02□□□□□ -0.16
CCDC88C-211ENST00000556726 USP27XA6NNY8 438 aa14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 PRKAB2O43741 272 aa14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 PIP4K2BP78356 416 aa14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 ZBTB1Q9Y2K1 713 aa14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 TCHHQ07283 1943 aa14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 SMTNL1A8MU46 457 aa14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 UBE2Q2LH0YL09 131 aa14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 ZFYP08048 801 aaPredicted RBP14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 FOXO4P98177 505 aa14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 WTAPQ15007 396 aa14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 CCDC102BQ68D86 513 aa14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 UTP14AQ9BVJ6 771 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 ANGEL1Q9UNK9 670 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 NIP7Q9Y221 180 aaKnown RBP eCLIP14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 ANKRD26Q9UPS8 1709 aa14.02□□□□□ -0.17
CCDC88C-211ENST00000556726 PFKFB1P16118 471 aa14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 RFX5P48382 616 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 MAPK8IP2Q13387 824 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 SMIM5Q71RC9 77 aa14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 SDR42E1Q8WUS8 393 aa14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 DHX58Q96C10 678 aa14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 SEC31BQ9NQW1 1179 aa14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 ANKARQ7Z5J8 1434 aa14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 NAA16Q6N069 864 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 CARMIL3Q8ND23 1372 aa14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 PEAK1Q9H792 1746 aa14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 POLR3GO15318 223 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 ATP6V1AP38606 617 aa14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 TEX35Q5T0J7 233 aa14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 GPIHBP1Q8IV16 184 aa14.01□□□□□ -0.17
CCDC88C-211ENST00000556726 H7C1W4 665 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 ATP1A3P13637 1013 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 BCAMP50895 628 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 KARSQ15046 597 aaKnown RBP14□□□□□ -0.17
CCDC88C-211ENST00000556726 PLIN2Q99541 437 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 CCDC94Q9BW85 323 aaPredicted RBP14□□□□□ -0.17
CCDC88C-211ENST00000556726 CABP5Q9NP86 173 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 BTBD18B2RXH4 712 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 ELF2Q15723 593 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 RTN1Q16799 776 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 SAMD1Q6SPF0 538 aaPredicted RBP14□□□□□ -0.17
CCDC88C-211ENST00000556726 GRAMD1CQ8IYS0 662 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 LLPHQ9BRT6 129 aaKnown RBP14□□□□□ -0.17
CCDC88C-211ENST00000556726 ZNF215Q9UL58 517 aaPredicted RBP14□□□□□ -0.17
CCDC88C-211ENST00000556726 MAPK8IP1Q9UQF2 711 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 USP42Q9H9J4 1324 aaKnown RBP14□□□□□ -0.17
CCDC88C-211ENST00000556726 CTDNEP1O95476 244 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 FBXO18Q8NFZ0 1043 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 UBXN4Q92575 508 aa14□□□□□ -0.17
CCDC88C-211ENST00000556726 RNF216Q9NWF9 866 aaPredicted RBP14□□□□□ -0.17
CCDC88C-211ENST00000556726 XBP1P17861 261 aa13.99□□□□□ -0.17
CCDC88C-211ENST00000556726 MCAMP43121 646 aa13.99□□□□□ -0.17
CCDC88C-211ENST00000556726 SENP2Q9HC62 589 aa13.99□□□□□ -0.17
CCDC88C-211ENST00000556726 KIAA1468Q9P260 1216 aa13.99□□□□□ -0.17
CCDC88C-211ENST00000556726 ELP1O95163 1332 aa13.99□□□□□ -0.17
CCDC88C-211ENST00000556726 POLR2DO15514 142 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-211ENST00000556726 PDE6AP16499 860 aa13.99□□□□□ -0.17
CCDC88C-211ENST00000556726 LRRC8AQ8IWT6 810 aa13.99□□□□□ -0.17
CCDC88C-211ENST00000556726 GNG11P61952 73 aa13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 DIS3L2Q8IYB7 885 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 EEF2KMTQ96G04 330 aa13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 PIH1D3Q9NQM4 214 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 NPHP4O75161 1426 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 FANCCQ00597 558 aa13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 PIGBQ92521 554 aa13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 RCOR1Q9UKL0 485 aa13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 MED23Q9ULK4 1368 aa13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 MARCH6O60337 910 aa13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 ZNF274Q96GC6 653 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 HEG1Q9ULI3 1381 aa13.98□□□□□ -0.17
CCDC88C-211ENST00000556726 TTF1Q15361 905 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-211ENST00000556726 TDRD7Q8NHU6 1098 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-211ENST00000556726 CYP2D7A0A087X1C5 515 aa13.97□□□□□ -0.17
CCDC88C-211ENST00000556726 ADALQ6DHV7 355 aa13.97□□□□□ -0.17
CCDC88C-211ENST00000556726 PPFIBP1Q86W92 1011 aa13.97□□□□□ -0.17
CCDC88C-211ENST00000556726 KIF28PB7ZC32 967 aa13.97□□□□□ -0.17
CCDC88C-211ENST00000556726 TPM1P09493 284 aa13.97□□□□□ -0.17
CCDC88C-211ENST00000556726 SMARCE1Q969G3 411 aa13.97□□□□□ -0.17
CCDC88C-211ENST00000556726 BRMS1Q9HCU9 246 aa13.97□□□□□ -0.17
CCDC88C-211ENST00000556726 VPS54Q9P1Q0 977 aa13.97□□□□□ -0.17
CCDC88C-211ENST00000556726 SLAIN2Q9P270 581 aa13.97□□□□□ -0.17
CCDC88C-211ENST00000556726 GYG1P46976 350 aa13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 ATP2B2Q01814 1243 aa13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 NR5A1Q13285 461 aa13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 ZNF174Q15697 407 aa13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 TBC1D10CQ8IV04 446 aa13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 LINC00301Q8NCQ3 95 aa13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 VAT1LQ9HCJ6 419 aa13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 KCNH3Q9ULD8 1083 aa13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 ADGRL3Q9HAR2 1447 aa13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 ZFP91Q96JP5 570 aaPredicted RBP13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 FUCA2Q9BTY2 467 aa13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 LZTFL1Q9NQ48 299 aa13.96□□□□□ -0.17
CCDC88C-211ENST00000556726 ADKP55263 362 aaKnown RBP13.96□□□□□ -0.18
CCDC88C-211ENST00000556726 CTSWP56202 376 aa13.96□□□□□ -0.18
CCDC88C-211ENST00000556726 GSDMDP57764 484 aa13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms